mRNA_E-siliculosus-1a_F_contig1647.3663.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1647.3663.1
Unique NamemRNA_E-siliculosus-1a_F_contig1647.3663.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1647.3663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1647contigE-siliculosus-1a_F_contig1647:17274..19341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size213
Model size215
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928153.5163124-CDS-E-siliculosus-1a_F_contig1647:17273..173891622928153.5163124-CDS-E-siliculosus-1a_F_contig1647:17273..17389Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1647 17274..17389 -
1696318825.902757-CDS-E-siliculosus-1a_F_contig1647:17273..173891696318825.902757-CDS-E-siliculosus-1a_F_contig1647:17273..17389Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1647 17274..17389 -
1622928153.5284896-CDS-E-siliculosus-1a_F_contig1647:19244..193411622928153.5284896-CDS-E-siliculosus-1a_F_contig1647:19244..19341Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1647 19245..19341 -
1696318825.9195242-CDS-E-siliculosus-1a_F_contig1647:19244..193411696318825.9195242-CDS-E-siliculosus-1a_F_contig1647:19244..19341Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1647 19245..19341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1647.3663.1prot_E-siliculosus-1a_F_contig1647.3663.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1647 17274..19341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1647.3663.1

>prot_E-siliculosus-1a_F_contig1647.3663.1 ID=prot_E-siliculosus-1a_F_contig1647.3663.1|Name=mRNA_E-siliculosus-1a_F_contig1647.3663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=71bp
HLQLSAPSEPNRALPRPSGLRGGGHHQQHPFDYCRVAQGCADVCFQMDRA
PWIGITFAGIPFPREFRSIR*
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mRNA from alignment at E-siliculosus-1a_F_contig1647:17274..19341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1647.3663.1 ID=mRNA_E-siliculosus-1a_F_contig1647.3663.1|Name=mRNA_E-siliculosus-1a_F_contig1647.3663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2068bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1647:17274..19341- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTCCAACTCTCTGCGCCTTCAGAACCGAATCGAGCACTGCCGAGACC
CAGCGGACTGCGAGGCGGCGGGCATCATCAGCAACATCCATTTGATTGTA
CGATATGTAACGAAAGAAACTGCCACTTCGCACGGTGACATAGCTGCGAA
TTTCCGGTAGCACAGACCAGCACTCACAGCTCCGTAGGAGGCTGCCGCTT
TGTGTGCGGTCAACCCCGACAATTGTTGGCAAAAGGTACTGATGATGCGC
TCGATCCCAGAATTGTCACTGTAAGTACGAAGTAAAGCTAGAGGTGGGCC
AATGGGACACACTGTACAATGTATGTAAATGTAAGCGTAGACTACTGTAG
TTAGCGTGTTTCCTGCTGTGCACGTTGACTGCTGTTATATATATATTTTT
TTACGTTGTGCGAGGTAATCCTCCCTACAGTACATTTTATCCCAACGGTA
CAACGCACCTACAGTACATCGCGCAACCTTACCGGCACAAGGAATGTACT
TCGTGCAAACTTGAAAGCACAAGGTGCTGACTCTGTGCCACCTTGGAGGC
ACAACAAGGTGGTGACTCCAGTACATATTATTTTTGGCAGTGTTGTTGTG
TGCAACCGTTTCGGTATGGCGTCGCCAGAAGTGTTTTTCGGAAATTGTCT
CTTTTATTTTCGTATCATTATCGCGACTCTTGTTCATGTACACGCCACGC
GGACGCGTTCAAACTGTTCTCAACCAAGAACAAACGCGTTCGAACACTGA
CGACGCATCCGAACGATGTTCCCCTGATAGATCGGGGCTACAGTTACATA
TATATCCAGTCAGAGCTGACTGACTGAAGGTGGTAGTTGTAGACCGAATT
GTGGTATATTTACCGTAGTCTTTCTCGATCAACTCTCCGCTCCGAGTCAG
CCACAGTGCATGATGAGCGAGCACGACGAAGGAGGTGTTCCGGTACGTAC
TCTGTGCGAGTGCAGGAAAAGCACCCACTGACGACATGTTTGTTGGTGAT
ACGTACTGATGTGTTGCAGTGCTATGTCGTCCTCTTTTTTTGTTGTAGGA
AGCTCTGCAGATTGGGGCCCTCCATCCATGTGGAAACCGTGGAACCCCCC
CCCCCTCGGGCCAAGACTGCAGCGCAATATAGGGGGTTTGGGCGGCGCGC
TTGCAGCAATCTGTTGTATAGGATTTAGTGTGTCGTCAATAGTTAAACCG
ATATATTCTTCATTGAATAGACTTTCGTGCCGCATTCTAAAACCAATAAT
TTTTTCTTCATATATTTGTAGGCTTCTGTGGAAAAAGGGAATCGTCCTCG
ACAGACGTTGTGGAGATTGTACCTGTATGAAGGTGGTCTCCACATTACTC
CCCCCTTTTTTCGAGACTTCTTCTTGTTTGCTAGGCAAGAGAAGTCTTCT
TGGGGTAACCGGAACCCGACCGGCTGGCGGCGGGGCGATTCACTTTTTTC
ACAATCCTCTGTGCGTGATTACACGGGTTCGCTACGTCCACCACGTCATC
AGAAGTTCCGAGTTCGATAGCCAGTGCGTCCTTCTTTGGCCCACCCACCG
TTTTTCTTTTTCCGTTGTCCGGAAGAAAATTTGGTGAGCGGCGGATTTTG
AACCCGTGACTTTTGCAACCAAAAGCAGGCACTATGACATCTCTTCGTCG
ACGCCATTGTGGAAAAAAGGGAATCGTCCTCGACAGACGTTGGGGAGATT
ATACCTTAATTAATGGTCTCCACACTTCTTCGTGTCGTCATACTATTTCC
AACACCATACACTAGACCTCGCGACCAAGATTGACGCGTATTCTTGGGGT
GTTTCCATAATTTCCACTAGCTCTGTGTGGGATCCCGCGCGCGAACGCTG
AAAACAGCGCCCGAAAATGTCGAAACCCCGGGGATTTTGTCAATATGTCC
CCGCCCGGAGACATGTAAGGCCCATCCCCCCCCCCCCCCCCCCGCGACCA
AGATTGCAGGGTAGCCCAGGGGTGTGCCGACGTTTGTTTCCAGATGGACA
GGGCCCCATGGATTGGAATAACGTTCGCTGGTATCCCCTTTCCCCGGGAG
TTCCGCAGTATCAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1647:17274..19341-

>mRNA_E-siliculosus-1a_F_contig1647.3663.1 ID=mRNA_E-siliculosus-1a_F_contig1647.3663.1|Name=mRNA_E-siliculosus-1a_F_contig1647.3663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1647:17274..19341- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTCCAACTCTCTGCGCCTTCAGAACCGAATCGAGCACTGCCGAGACC
CAGCGGACTGCGAGGCGGCGGGCATCATCAGCAACATCCATTTGATTCAC
CTCCAACTCTCTGCGCCTTCAGAACCGAATCGAGCACTGCCGAGACCCAG
CGGACTGCGAGGCGGCGGGCATCATCAGCAACATCCATTTGATTATTGCA
GGGTAGCCCAGGGGTGTGCCGACGTTTGTTTCCAGATGGACAGGGCCCCA
TGGATTGGAATAACGTTCGCTGGTATCCCCTTTCCCCGGGAGTTCCGCAG
TATCAGGTAAATTGCAGGGTAGCCCAGGGGTGTGCCGACGTTTGTTTCCA
GATGGACAGGGCCCCATGGATTGGAATAACGTTCGCTGGTATCCCCTTTC
CCCGGGAGTTCCGCAGTATCAGGTAA
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