mRNA_E-siliculosus-1a_F_contig1646.3658.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1646.3658.1
Unique NamemRNA_E-siliculosus-1a_F_contig1646.3658.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1646.3658.1 vs. uniprot
Match: Q8QNP7_ESV1K (EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP7_ESV1K)

HSP 1 Score: 431 bits (1107), Expect = 6.400e-151
Identity = 220/268 (82.09%), Postives = 228/268 (85.07%), Query Frame = 1 
Query:    1 MSLLIPVAKNKTGETVTPTCNKEDGPFACLGCAKPLVLRQGEKNQWHFAHHSNNDDECSAGGETYIHLAAKLLLVTYITRFEFASKCGRLCHDHEKQYQGCTAVQEYRYDGVHSADVAVLRDGNMVAIIEVMATHKTEGEPLASRIECVGGDNVWEVEAMDVWRQRKGLSLTTDTIHVPSLLKLEDCAECAQESREAHERREKLMAIEQKNPRHAVNSTPSDR-TPPWSLSTTTPSGATAC**KKFFYKPGDGIDRSYGWMKAPVASP 801
            MSLLIPVAKNKTGETVTPTCNKEDGPFACLGCAKPLVLRQG+KNQWHFAHHSNNDDECSAGGETYIHLAAKLLLVTYITRFEFASKCGRL HDHEKQYQGCTAVQEYRYDGVHSADVAVLRDGN+ AIIEVMATHKTEGEPLASRIE VG DNVW V+AMDVWRQRK LSLTTDTIHV SLLKLEDCAECAQE +EA ERREKLMAIE KN   A +   ++R                    KKFF+KPGD IDRSYGWMKA  ASP
Sbjct:    1 MSLLIPVAKNKTGETVTPTCNKEDGPFACLGCAKPLVLRQGQKNQWHFAHHSNNDDECSAGGETYIHLAAKLLLVTYITRFEFASKCGRLRHDHEKQYQGCTAVQEYRYDGVHSADVAVLRDGNLEAIIEVMATHKTEGEPLASRIERVGADNVWGVDAMDVWRQRKRLSLTTDTIHVASLLKLEDCAECAQEGKEAQERREKLMAIE-KNKSEAYSQQYNERQNTXXXXXXXXXXXXXXXXMKKFFFKPGDSIDRSYGWMKASEASP 267
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BLAST of mRNA_E-siliculosus-1a_F_contig1646.3658.1 vs. uniprot
Match: UPI001C246DA1 (hypothetical protein n=1 Tax=Synechococcus sp. CCY 9618 TaxID=2815602 RepID=UPI001C246DA1)

HSP 1 Score: 58.2 bits (139), Expect = 3.830e-6
Identity = 43/150 (28.67%), Postives = 71/150 (47.33%), Query Frame = 1 
Query:    7 LLIPVAKNKTGETVTPTCNKEDGPFACLGCAKPLVLRQGEKNQWHFAHHSNNDDECSAGGETYIHLAAKLLLVTYITR-------FEFASKCGRLC--HDHEKQYQGCTAVQEYRYDGVHSADVAVL-RDGNMVAIIEVMATHKTEGEPL 426
            +L  +A N++G+ +     +  G + CL C   ++ R+G + + HFAH  N    CS   ET +H   K  L   I++            KCG     HD     +     +EY   G+   D+A++ ++GN+VA+IEV+ +H  E   L
Sbjct:   43 ILYSLANNESGQLIKAEAAQRSGIYFCLSCNGEMISRRGARVRPHFAH-KNISPNCSP--ETALHYGFKKFLHERISKSLGSGEQIAIHWKCGYCSGSHDGNLLKRAVNVEEEYGL-GLCRPDIALIGKEGNVVAVIEVVVSHSPEESTL 188
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BLAST of mRNA_E-siliculosus-1a_F_contig1646.3658.1 vs. uniprot
Match: A0A369CIK5_9GAMM (Competence protein CoiA-like protein n=1 Tax=Thioalbus denitrificans TaxID=547122 RepID=A0A369CIK5_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 8.770e-5
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   85 CLGCAKPLVLRQGEKNQWHFAHHSNNDDECSAGGETYIHLAAKLLLV 225
            C  C +P++ RQGE  QWHFAH S    EC    ET +HLAAK LL+
Sbjct:   34 CPSCGEPVLARQGEVRQWHFAHVSGT--ECERAAETALHLAAKHLLL 78
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNP7_ESV1K6.400e-15182.09EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
UPI001C246DA13.830e-628.67hypothetical protein n=1 Tax=Synechococcus sp. CCY... [more]
A0A369CIK5_9GAMM8.770e-553.19Competence protein CoiA-like protein n=1 Tax=Thioa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1646contigE-siliculosus-1a_F_contig1646:16340..17140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size723
Model size801
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928153.2993052-UTR-E-siliculosus-1a_F_contig1646:16339..164171622928153.2993052-UTR-E-siliculosus-1a_F_contig1646:16339..16417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1646 16340..16417 -
1696318825.8031342-UTR-E-siliculosus-1a_F_contig1646:16339..164171696318825.8031342-UTR-E-siliculosus-1a_F_contig1646:16339..16417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1646 16340..16417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928153.312626-CDS-E-siliculosus-1a_F_contig1646:16417..171401622928153.312626-CDS-E-siliculosus-1a_F_contig1646:16417..17140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 16418..17140 -
1696318825.813954-CDS-E-siliculosus-1a_F_contig1646:16417..171401696318825.813954-CDS-E-siliculosus-1a_F_contig1646:16417..17140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 16418..17140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1646.3658.1prot_E-siliculosus-1a_F_contig1646.3658.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1646 16418..17140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1646.3658.1

>prot_E-siliculosus-1a_F_contig1646.3658.1 ID=prot_E-siliculosus-1a_F_contig1646.3658.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3658.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=241bp
MSLLIPVAKNKTGETVTPTCNKEDGPFACLGCAKPLVLRQGEKNQWHFAH
HSNNDDECSAGGETYIHLAAKLLLVTYITRFEFASKCGRLCHDHEKQYQG
CTAVQEYRYDGVHSADVAVLRDGNMVAIIEVMATHKTEGEPLASRIECVG
GDNVWEVEAMDVWRQRKGLSLTTDTIHVPSLLKLEDCAECAQESREAHER
REKLMAIEQKNPRHAVNSTPSDRTPPWSLSTTTPSGATAC*
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mRNA from alignment at E-siliculosus-1a_F_contig1646:16340..17140-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1646.3658.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3658.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3658.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=801bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:16340..17140- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCCCTTCTCATCCCTGTCGCGAAAAACAAGACCGGCGAGACGGTGAC
ACCGACCTGTAACAAAGAGGACGGCCCGTTCGCGTGTCTCGGTTGTGCCA
AGCCGCTGGTTCTGCGGCAGGGCGAAAAGAACCAGTGGCATTTCGCGCAC
CATTCCAACAACGATGACGAGTGTTCTGCCGGTGGGGAGACCTACATCCA
CTTGGCGGCCAAGCTGTTGTTGGTCACGTACATCACGAGGTTCGAGTTTG
CCTCAAAGTGTGGTCGCCTGTGTCACGATCACGAAAAGCAATACCAAGGA
TGCACGGCGGTGCAGGAGTACCGCTACGACGGCGTACACTCCGCGGATGT
GGCCGTGTTGCGTGACGGAAATATGGTAGCTATCATTGAGGTCATGGCGA
CGCACAAGACAGAGGGAGAACCGTTGGCATCCAGAATAGAGTGTGTTGGA
GGAGACAACGTGTGGGAGGTGGAAGCAATGGACGTTTGGAGACAGCGGAA
GGGTCTGTCATTGACGACCGATACCATTCATGTACCCAGTTTGCTCAAGT
TAGAGGACTGTGCCGAATGTGCGCAGGAGAGTAGGGAGGCGCACGAACGA
CGGGAAAAACTGATGGCGATTGAGCAAAAAAATCCGAGGCATGCAGTCAA
CAGTACACCGAGCGACAGAACACCACCATGGTCATTATCGACGACAACAC
CCTCCGGCGCAACGGCGTGCTGATGAAAAAAGTTTTTTTATAAGCCTGGC
GACGGCATTGACCGTAGTTACGGGTGGATGAAGGCCCCCGTGGCATCCCC
C
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1646:16340..17140-

>mRNA_E-siliculosus-1a_F_contig1646.3658.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3658.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3658.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:16340..17140- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCCCTTCTCATCCCTGTCGCGAAAAACAAGACCGGCGAGACGGTGAC
ACCGACCTGTAACAAAGAGGACGGCCCGTTCGCGTGTCTCGGTTGTGCCA
AGCCGCTGGTTCTGCGGCAGGGCGAAAAGAACCAGTGGCATTTCGCGCAC
CATTCCAACAACGATGACGAGTGTTCTGCCGGTGGGGAGACCTACATCCA
CTTGGCGGCCAAGCTGTTGTTGGTCACGTACATCACGAGGTTCGAGTTTG
CCTCAAAGTGTGGTCGCCTGTGTCACGATCACGAAAAGCAATACCAAGGA
TGCACGGCGGTGCAGGAGTACCGCTACGACGGCGTACACTCCGCGGATGT
GGCCGTGTTGCGTGACGGAAATATGGTAGCTATCATTGAGGTCATGGCGA
CGCACAAGACAGAGGGAGAACCGTTGGCATCCAGAATAGAGTGTGTTGGA
GGAGACAACGTGTGGGAGGTGGAAGCAATGGACGTTTGGAGACAGCGGAA
GGGTCTGTCATTGACGACCGATACCATTCATGTACCCAGTTTGCTCAAGT
TAGAGGACTGTGCCGAATGTGCGCAGGAGAGTAGGGAGGCGCACGAACGA
CGGGAAAAACTGATGGCGATTGAGCAAAAAAATCCGAGGCATGCAGTCAA
CAGTACACCGAGCGACAGAACACCACCATGGTCATTATCGACGACAACAC
CCTCCGGCGCAACGGCGTGCTGAATGTCCCTTCTCATCCCTGTCGCGAAA
AACAAGACCGGCGAGACGGTGACACCGACCTGTAACAAAGAGGACGGCCC
GTTCGCGTGTCTCGGTTGTGCCAAGCCGCTGGTTCTGCGGCAGGGCGAAA
AGAACCAGTGGCATTTCGCGCACCATTCCAACAACGATGACGAGTGTTCT
GCCGGTGGGGAGACCTACATCCACTTGGCGGCCAAGCTGTTGTTGGTCAC
GTACATCACGAGGTTCGAGTTTGCCTCAAAGTGTGGTCGCCTGTGTCACG
ATCACGAAAAGCAATACCAAGGATGCACGGCGGTGCAGGAGTACCGCTAC
GACGGCGTACACTCCGCGGATGTGGCCGTGTTGCGTGACGGAAATATGGT
AGCTATCATTGAGGTCATGGCGACGCACAAGACAGAGGGAGAACCGTTGG
CATCCAGAATAGAGTGTGTTGGAGGAGACAACGTGTGGGAGGTGGAAGCA
ATGGACGTTTGGAGACAGCGGAAGGGTCTGTCATTGACGACCGATACCAT
TCATGTACCCAGTTTGCTCAAGTTAGAGGACTGTGCCGAATGTGCGCAGG
AGAGTAGGGAGGCGCACGAACGACGGGAAAAACTGATGGCGATTGAGCAA
AAAAATCCGAGGCATGCAGTCAACAGTACACCGAGCGACAGAACACCACC
ATGGTCATTATCGACGACAACACCCTCCGGCGCAACGGCGTGCTGA
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