mRNA_E-siliculosus-1a_F_contig1646.3655.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: Q8QNC3_ESV1K (EsV-1-159 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC3_ESV1K) HSP 1 Score: 142 bits (357), Expect = 1.150e-33 Identity = 89/211 (42.18%), Postives = 132/211 (62.56%), Query Frame = 1
Query: 667 VTSIKSTVLEVTGAVTYEITI----TDSLSATRVVHTGISVGE-VTTTNLTPETSYTLGLYADDGSGYVLVETTSVTTLPNSAENYDPSQYGSNGRFDLSTLDSTSFSLLDQ--NNIFTTGESLKIKL-GTSESNVSFVRLGDAVSTDESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTIQDV 1275
VT I++T+ E+ GA++Y + + +DS + T TGI V NL ET+Y + LYA G GY +V+T+S TL N A NY S YG+ G +DLSTLD ++Q N++F TGE + + + G ++ +SFV+ G+ +TD+S+L PF+SSSGSGQ T+ LSD S+ +V+YD+ +S+TIG G ++DGKK TI +V
Sbjct: 311 VTRIRATIAEIDGALSYRVVVGEEGSDSTTVTHDDITGIVTDRMVEIKNLQAETTYAVTLYASYGGGYEVVQTSSSQTLANVASNYSVSDYGAAGAYDLSTLDQAELDSVNQVMNDLFATGEKIGVSVSGKKKATLSFVKRGEVTTTDDSVLAPFSSSSGSGQMFTLQLSDASTKTVSYDETTDSITIGDHEYMSGDRFVLDGKKCTILEV 521
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: Q6XLW1_9PHYC (FirrV-1-E1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLW1_9PHYC) HSP 1 Score: 112 bits (280), Expect = 1.320e-23 Identity = 115/446 (25.78%), Postives = 212/446 (47.53%), Query Frame = 1
Query: 1 TMSLVLRYKFDESTELLATDSSGNSN--TLVNGGGVVSVADATYGDVAYF--DGVNSPMTLVTPPSSMTGTVHRTFSFWMKRD--NQDLEIFH----GQGLASGDELRVQFQG-GVRLYNNGQLQNIAQSFAT----GTWYNIGFTYDGTTQTVYVDG-VPIGSMSVSMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNTIYTQGPNPPEPQGSNPSPEYLEHVAGVTSIKSTVLEVTGAVTYEITITDSLSATRVVHTGISVGEVTTTNLTPETSYTLGLYADD-------GSGYVLVETTSVTTLPNSAENYDPSQYGSNGRFDLSTLDSTSFSLLDQNNIFTTGESLKIKLGTSESNVSFVRLGDAVSTDES-ILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTI 1266
T + ++RY S + L T++ G+S T N V V+DATYG+VAYF DG + P ++G+ R SFW+ D N + ++ GL + +++ +Q VR+ + N+ T TWY TYDG+ Y DG + + +V T A ++ + F G M+DFR+YD+ L+ E + ++ GP+ G+ P + + S+ TY+IT++++ A V + ++ E + NL + Y LY+D G ++++TS+T++ + N D S + S+ ++ L +SF D+ + + + T+ S +FV+ GD++ + + IL PF + SGQ + +SD+S+ ++ +D+ N+++ I +G ++++DGK T+
Sbjct: 3 TTTPIVRYPMT-SVDTLGTNAEGSSYHATATN---VSIVSDATYGNVAYFSGDGTSRIDMNTIPTDVLSGSATRGVSFWVNFDEINGNYNVYTQGRASDGLGNFVHVKIGYQNTNVRVEYG--VSNVHMWHTTTLLPDTWYMFAMTYDGSVSRTYWDGNLVVEDTTVPDTT----AGLVNLGKNFLYGADFKGKMTDFRIYDFALSLENIQSLQADGPSLQIELGATVYPHFAQLTWADNDSNSSS-------TYDITVSENGGAEVTVASSVTGTEFSAYNLNDGSVYDFRLYSDGTVLGRNLGQATPVIDSTSLTSMSSVLSN-DLSVFTSDVVSEIQPLMDSSFETNDRIKV-----RVSVHNSTTVSTTTFVKSGDSIPLNSNYILTPFVPNGSSGQFFNLEMSDSSTKTLEFDESNSTILIDGAAYSVGDTLVLDGKTCTL 425
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: B5LWA1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA1_9PHYC) HSP 1 Score: 101 bits (251), Expect = 9.800e-20 Identity = 115/447 (25.73%), Postives = 194/447 (43.40%), Query Frame = 1
Query: 13 VLRYKFDESTELLATDSSGNS-NTLVNGGGVVSVADATYGDVAYFDGVNSPMTLVT--PPSSMTGTVHRTFSFWMKRDN-QDLEIFHGQGLA-SGDELRVQFQGGVR------LYNNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNTIYTQGPNPPEPQGSNPSPEYLEHVAGVTSIKSTVL---EVTGAVTYEITITDSLSATRVVHTGISVGEVTTTNLTPETSYTLGLYADDGSGYVLVETTSVTTLPNSAENYDPSQYGSNGRFDLSTLDSTSFSLLDQNNIFTTGESLKIKLGTSES--------------NVSFVRLGDAVS-----TDESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGK 1254
V+RY ST+ L T++ S N V V VAD T+G AYF G + ++ P + G+ R+ SFW+ D D + + QG A +G+ L Q + G R Y + + S A TWY+ TYDG T Y G + + +V++ T +A + +S+ F G M DFR+YD ++ E++++++ GP+P L VA V L +V G Y++ ++ + V + + +L ++Y YA G VLV + T P S+ D+ TL S ++ + + + + + L T+E N FVR G+ S + SIL PF GQ++++ LSD S+ ++ +D++N ++T+ T G ++D +
Sbjct: 7 VVRYPMS-STDTLGTNAESLSFNASVEN--VSVVADETFGTAAYFSGDGTSRIDMSDIPTEVLAGSAPRSLSFWVNFDEISDNQNVYSQGNAETGEGLFAQVKIGYRGTNVRVEYGSHSNRFFETSLAPNTWYSFVMTYDGVTSKTYWGGDLVLTQTVTLNT---EAGFVNLGQTYSNGIDFAGKMVDFRIYDVDMSSEDVSSVFADGPSP------------LLDVAAVMLPYVAQLSWRDVAGVSAYDVMYEENGGESVVAAESVDSTSLAVYDLKEGSTYNFKFYA----GGVLVGSVDGQTTP---------LLDSDNLKDMLTLVSNDLTVFNTDTVSEMQRLMDLSLETNEEVVVRFTFKNKTLPLNARFVRDGETFSMSTLGVEGSILTPFIPDGSPGQSLSLELSDLSTTTLTFDEINGTVTVDGVTYSTGDKFVLDDR 422
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: Q8QNM5_ESV1K (EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM5_ESV1K) HSP 1 Score: 98.2 bits (243), Expect = 2.390e-18 Identity = 68/168 (40.48%), Postives = 102/168 (60.71%), Query Frame = 1
Query: 796 NLTPETSYTLGLY--ADDGSGYVLVETTSVTTLPNSAENYDPSQYGSN-GRFDLSTLDSTSFSLLDQ--NNIFTTGESLKIKL-GTSESNVSFVRLGDAVSTDE--SILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTIQDV 1275
NL +T Y++ Y DD V + + TLPN A N+D S Y G FDL L + S S LD N+IF+TG+S+ + L G E+ FV+ GD + D+ SI +PF++S+G GQ++T+ L+D ++V+VAYDD ++ IG T G S+++DG+K+TI V
Sbjct: 446 NLLSQTLYSVYTYYSMDDTDPSVPMSSGQYLTLPNVASNHDVSSYADERGGFDLRGLSTESLSALDDVLNDIFSTGDSVTLSLRGKGETKTKFVKRGDTAAIDDGVSIAMPFSASAGPGQSVTLALTDATTVAVAYDDTTEAVLIGGTTYAAGDSLVLDGQKVTIFSV 613
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: Q6XM36_9PHYC (FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM36_9PHYC) HSP 1 Score: 98.2 bits (243), Expect = 2.510e-18 Identity = 75/219 (34.25%), Postives = 124/219 (56.62%), Query Frame = 1
Query: 640 PEYLEHVAGVTSIKSTVLEVTGAVTYEITITDSLSATRV-VHTGISVGEVTTTNLTPETSYTLGLYAD-DGSGYVLVETTSVTTLPNSAENYDPSQYGS-NGRFDLSTLDSTSFSLLDQ--NNIFTTGESLKIKLGTSESNVSFVRLGDAVST--DESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTIQDV 1275
PE + V I T V+GA+ Y++T + + + V TG + +L PET YT+ LY+ DG+ Y T S TTL N + NY S + + +G++DLS +S S L Q +F+TG++L + +G+ FV++G+ S +E++ +PFN ++ Q+ + LSDNS+V++++D+ +N++ IG E G S IVD +KLTI +
Sbjct: 427 PEGMTLVPKPLFIDVTFAAVSGAIAYKLTKKTTTATDEIDVATGFTDLAQRVRDLQPETEYTISLYSSTDGTTYTPAGTASATTLANVSSNYSASDFSNESGKYDLSKFGKSSRSQLFQLAGTLFSTGDNLVVPVGSGNKTTKFVKVGENTSIVGEEALFIPFNETA---QSANITLSDNSTVTLSFDESDNTVEIGGEKYASGESTIVDQQKLTIVSI 642
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: B5LWE4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC) HSP 1 Score: 94.7 bits (234), Expect = 3.490e-17 Identity = 96/318 (30.19%), Postives = 143/318 (44.97%), Query Frame = 1
Query: 367 GTWYNIGFTYDGTTQTVYVD---GVPIGSMSVSMITSSNDAFVIGGSPRWSSSFF-FTGSMSDFRVYDYGLTPEEMNTIYTQGPNPPEPQGSNPSPEYLEHVAGVTSIKSTVLEVTGAVTYEIT---ITDSLSATRVVHTGISVGEVTTTNLTPETSYTLGLYA--DDGSGYVLVETTSVTTLPNSAENYDPSQYGSNG--RFDLSTLDSTSFSLLDQ--NNIFTTGESLKIKLGTSESNVSFVRLGDAVSTD--ESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTIQDV 1275
G+ Y+ G YD VY+D G+ + + S+ D P S TG+ S+ YD+ TI E VA + EV GA Y +T D + T V T S E +L E+ Y +Y+ D S Y L +S TTL N + NY Y + G +FDLS+ D + + + N +F TG+++ I +G+ FV+LG +V D ++L+PF + GS QT ++ LSDNSSV++ YD+ ++ IG G S IVD +KLT+ +V
Sbjct: 354 GSTYHAGLPYDHGETMVYIDTEFGLTYTDSLSTALFSTMDTSAFTLDPETSLPVIALTGTDSESVAYDWEFVFGNNTTI--------------------EFVARPLHVDVKFGEVPGATQYRLTKQLSPDGVETT--VDTDFSTFEKRAESLQSESVYVFRVYSRTDPESEYTLAYQSSTTTLANVSSNYSAGDYKAEGEDQFDLSSFDKDTMANFHEVMNEVFDTGDAIVIPIGSETKKTKFVKLGGSVPIDGESAVLIPFLETGGSAQTASLTLSDNSSVTLTYDETAGTIGIGGVDYSPGESTIVDSQKLTLVEV 649
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: A0A7V6LGU9_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7V6LGU9_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 1.790e-11 Identity = 64/214 (29.91%), Postives = 104/214 (48.60%), Query Frame = 1
Query: 22 YKFDESTELLATDSSGNSNTLVNGGGVVSVADA-TYGDVAYFDGVNSPMTLVTPPSSMTGTVHRTFSFWMKRDNQ-DLEIFHGQGLASGDE---LRVQFQGGVRLY---NNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEE----MNTIYTQGPN---PPE 618
Y FD+ L A DSS N LV G G + +DA +G Y +G ++ + P TG+ T + WM+ D + F G G + ++ LR+ G++ Y N+ ++ ++ + G W++I T+DG TQT+YVDGVP+ + S + + + FV+G + +S F G + + + D T M T+ G N PPE
Sbjct: 232 YTFDDPNHLGA-DSSARDNHLVAGTGSPTYSDAGVFGGALYVNGSSTLIRQTFPAGVPTGSTPYTIALWMRDDGSPNTGGFCGWGNNANNQCNNLRLAGAHGLKNYWYANDFEVSGLSTNLKDGEWHHIAVTWDGLTQTMYVDGVPVRTTSRTGLNAQGINFVVG---KTTSDVGFKGYIDNLLIADRAFTAAGIVAIMQTLMHSGSNGLLPPE 441
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: UPI001CC33372 (polysaccharide deacetylase family protein n=1 Tax=Geobacter sp. AOG2 TaxID=1566347 RepID=UPI001CC33372) HSP 1 Score: 75.5 bits (184), Expect = 8.200e-11 Identity = 93/301 (30.90%), Postives = 141/301 (46.84%), Query Frame = 1
Query: 1 TMSLVLRYKFDESTELLATDSSGNS-NTLVNGGGVVSVADATYGDVAYFDGVNSPMTLVTPPSS--MTGTVHRTFSFWMKRDN----------QDLEIFHGQGL-ASGDELRVQFQGGVRLYNNGQLQN--IAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSM-ITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNT-IYTQGPN---PPEPQGSNPSPEYLEHVAGVTSIKSTVLEVT----GAVTYEITITDSLSATRVVHTGISV--GEVTTTNLTPETSYT 822
T LV Y F+E T D+SGN N ++G V+ D G+ F+GVN+ LVT P+S + T T W+ N ++ F+ GL S V F + NG + + TW ++ TYDGTT +VYV+G+ GS ++S I +S+ A IGG+ W++ +F TG + + R++D LT E+ T + T N PP G + +P L V G +S+ + L GAV +T+T S ++ +V + V G +TT TS T
Sbjct: 618 TAGLVAAYAFNEGTGTTVADASGNGLNGTISGASWVAGKD---GNALSFNGVNN---LVTVPASNVLDLTTGMTLEGWVYPTNSSGKWGCVLMKETSNFYAYGLYISPANHPVVF-----MVINGSEHGFEVPTNLTANTWSHLAATYDGTTLSVYVNGILKGSETISATIPASSGALRIGGNSIWATEYF-TGIIDNVRIFDRALTNAEIQTDVNTPVGNVSAPPALSGVSLAPGSL--VGGNSSVATVTLSAPAPSEGAV---VTLTSSNASVAMVPESVMVPAGSTSTTFTISTTSVT 901
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: A0A522VBI9_9GAMM (LamG domain-containing protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A522VBI9_9GAMM) HSP 1 Score: 74.3 bits (181), Expect = 1.660e-10 Identity = 63/219 (28.77%), Postives = 102/219 (46.58%), Query Frame = 1
Query: 64 SGNSNTLVNGGGVVSVADATYGDV--AY-FDGVNSPMTLVTPPSSMTGTVHRTFSFWMKRDNQD------LEIFHGQGLASGDELRVQFQGGVRLYNNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSMITSSNDAFVIGGSPRWSSS-----FFFTGSMSDFRVYDYGLTPEEMNTIYTQGPNPPEPQGSNPSPEYLEHVAGVTSI 678
+GN+ T+ N ++ + +G+ AY FDG S + L P + G R+ W K +Q + G A L + Q G+ Y N N + A G W+ +G T+DG+T +++VDG+ S + T+ N+ F+ G P S +F G++ D R+Y+ LTPEE+ +YT N + G+ P P L + +T I
Sbjct: 45 AGNNGTINN----ATLTEDRFGNSNSAYAFDGSTSYIDLTGKPIAQQGNGSRSIFVWCKTTDQKSFQRVVVTGTTGSNRAFNMLLWINGQPGIMGYANDLYMNTG-TIANGEWHFVGATFDGSTSSIWVDGILKASKQTTYNTTGNNNFI--GRPNDDPSNAGTETYFNGNIDDVRIYNRALTPEEIQQLYTA--NGTDTTGT-PDPATLPKIDSITPI 253
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: A0A4P5YBV2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A4P5YBV2_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 8.470e-10 Identity = 56/200 (28.00%), Postives = 88/200 (44.00%), Query Frame = 1
Query: 7 SLVLRYKFDESTELLATDSSGNSNTLVNGGGVVSVADATYGDVAYFDGVNSPMTLVTPPSSMTGTVHRTFSFWMKRDNQD-----LEIFHGQGLASGDELRVQFQGGVRLYNNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNTI 591
+LVL +K DE++ +A D+SG SN+ GGG VA G FDG + + G T + W+K + + G+ + L GV + ++ A GTW ++ T+DG TQT YVDGV +GS S + + + + W ++F G + D RVY L E++ +
Sbjct: 1296 NLVLNWKLDETSGTVAADASGRSNSGAVGGGATWVA-GKVGGALQFDGNSGAVATANVGGLPGGNQAHTLAAWVKVKTLPPKRAWIALLGDAGVGAHHWLIN--SNGVTQFGAWNGNQVSPVLAVGTWKHLAVTFDGATQTGYVDGVAVGSTSATYQLK-GVSLKVARAVDWENAF--NGVVDDIRVYSRALNASEVSAL 1489 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1646.3655.1 >prot_E-siliculosus-1a_F_contig1646.3655.1 ID=prot_E-siliculosus-1a_F_contig1646.3655.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=425bp MSLVLRYKFDESTELLATDSSGNSNTLVNGGGVVSVADATYGDVAYFDGVback to top mRNA from alignment at E-siliculosus-1a_F_contig1646:3018..4323- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1646.3655.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3655.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1306bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:3018..4323- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1646:3018..4323- >mRNA_E-siliculosus-1a_F_contig1646.3655.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3655.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2550bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:3018..4323- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |