mRNA_E-siliculosus-1a_F_contig1646.3655.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1646.3655.1
Unique NamemRNA_E-siliculosus-1a_F_contig1646.3655.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: Q8QNC3_ESV1K (EsV-1-159 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC3_ESV1K)

HSP 1 Score: 142 bits (357), Expect = 1.150e-33
Identity = 89/211 (42.18%), Postives = 132/211 (62.56%), Query Frame = 1
Query:  667 VTSIKSTVLEVTGAVTYEITI----TDSLSATRVVHTGISVGE-VTTTNLTPETSYTLGLYADDGSGYVLVETTSVTTLPNSAENYDPSQYGSNGRFDLSTLDSTSFSLLDQ--NNIFTTGESLKIKL-GTSESNVSFVRLGDAVSTDESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTIQDV 1275
            VT I++T+ E+ GA++Y + +    +DS + T    TGI     V   NL  ET+Y + LYA  G GY +V+T+S  TL N A NY  S YG+ G +DLSTLD      ++Q  N++F TGE + + + G  ++ +SFV+ G+  +TD+S+L PF+SSSGSGQ  T+ LSD S+ +V+YD+  +S+TIG      G   ++DGKK TI +V
Sbjct:  311 VTRIRATIAEIDGALSYRVVVGEEGSDSTTVTHDDITGIVTDRMVEIKNLQAETTYAVTLYASYGGGYEVVQTSSSQTLANVASNYSVSDYGAAGAYDLSTLDQAELDSVNQVMNDLFATGEKIGVSVSGKKKATLSFVKRGEVTTTDDSVLAPFSSSSGSGQMFTLQLSDASTKTVSYDETTDSITIGDHEYMSGDRFVLDGKKCTILEV 521          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: Q6XLW1_9PHYC (FirrV-1-E1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLW1_9PHYC)

HSP 1 Score: 112 bits (280), Expect = 1.320e-23
Identity = 115/446 (25.78%), Postives = 212/446 (47.53%), Query Frame = 1
Query:    1 TMSLVLRYKFDESTELLATDSSGNSN--TLVNGGGVVSVADATYGDVAYF--DGVNSPMTLVTPPSSMTGTVHRTFSFWMKRD--NQDLEIFH----GQGLASGDELRVQFQG-GVRLYNNGQLQNIAQSFAT----GTWYNIGFTYDGTTQTVYVDG-VPIGSMSVSMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNTIYTQGPNPPEPQGSNPSPEYLEHVAGVTSIKSTVLEVTGAVTYEITITDSLSATRVVHTGISVGEVTTTNLTPETSYTLGLYADD-------GSGYVLVETTSVTTLPNSAENYDPSQYGSNGRFDLSTLDSTSFSLLDQNNIFTTGESLKIKLGTSESNVSFVRLGDAVSTDES-ILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTI 1266
            T + ++RY    S + L T++ G+S   T  N   V  V+DATYG+VAYF  DG +       P   ++G+  R  SFW+  D  N +  ++       GL +   +++ +Q   VR+     + N+     T     TWY    TYDG+    Y DG + +   +V   T    A ++     +     F G M+DFR+YD+ L+ E + ++   GP+     G+   P + +         S+        TY+IT++++  A   V + ++  E +  NL   + Y   LY+D        G    ++++TS+T++ +   N D S + S+   ++  L  +SF   D+  +      + +   T+ S  +FV+ GD++  + + IL PF  +  SGQ   + +SD+S+ ++ +D+ N+++ I      +G ++++DGK  T+
Sbjct:    3 TTTPIVRYPMT-SVDTLGTNAEGSSYHATATN---VSIVSDATYGNVAYFSGDGTSRIDMNTIPTDVLSGSATRGVSFWVNFDEINGNYNVYTQGRASDGLGNFVHVKIGYQNTNVRVEYG--VSNVHMWHTTTLLPDTWYMFAMTYDGSVSRTYWDGNLVVEDTTVPDTT----AGLVNLGKNFLYGADFKGKMTDFRIYDFALSLENIQSLQADGPSLQIELGATVYPHFAQLTWADNDSNSSS-------TYDITVSENGGAEVTVASSVTGTEFSAYNLNDGSVYDFRLYSDGTVLGRNLGQATPVIDSTSLTSMSSVLSN-DLSVFTSDVVSEIQPLMDSSFETNDRIKV-----RVSVHNSTTVSTTTFVKSGDSIPLNSNYILTPFVPNGSSGQFFNLEMSDSSTKTLEFDESNSTILIDGAAYSVGDTLVLDGKTCTL 425          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: B5LWA1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA1_9PHYC)

HSP 1 Score: 101 bits (251), Expect = 9.800e-20
Identity = 115/447 (25.73%), Postives = 194/447 (43.40%), Query Frame = 1
Query:   13 VLRYKFDESTELLATDSSGNS-NTLVNGGGVVSVADATYGDVAYFDGVNSPMTLVT--PPSSMTGTVHRTFSFWMKRDN-QDLEIFHGQGLA-SGDELRVQFQGGVR------LYNNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNTIYTQGPNPPEPQGSNPSPEYLEHVAGVTSIKSTVL---EVTGAVTYEITITDSLSATRVVHTGISVGEVTTTNLTPETSYTLGLYADDGSGYVLVETTSVTTLPNSAENYDPSQYGSNGRFDLSTLDSTSFSLLDQNNIFTTGESLKIKLGTSES--------------NVSFVRLGDAVS-----TDESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGK 1254
            V+RY    ST+ L T++   S N  V    V  VAD T+G  AYF G  +    ++  P   + G+  R+ SFW+  D   D +  + QG A +G+ L  Q + G R       Y +   +    S A  TWY+   TYDG T   Y  G  + + +V++ T   +A  +     +S+   F G M DFR+YD  ++ E++++++  GP+P            L  VA V       L   +V G   Y++   ++   + V    +    +   +L   ++Y    YA    G VLV +    T P            S+   D+ TL S   ++ + + +      + + L T+E               N  FVR G+  S      + SIL PF      GQ++++ LSD S+ ++ +D++N ++T+   T   G   ++D +
Sbjct:    7 VVRYPMS-STDTLGTNAESLSFNASVEN--VSVVADETFGTAAYFSGDGTSRIDMSDIPTEVLAGSAPRSLSFWVNFDEISDNQNVYSQGNAETGEGLFAQVKIGYRGTNVRVEYGSHSNRFFETSLAPNTWYSFVMTYDGVTSKTYWGGDLVLTQTVTLNT---EAGFVNLGQTYSNGIDFAGKMVDFRIYDVDMSSEDVSSVFADGPSP------------LLDVAAVMLPYVAQLSWRDVAGVSAYDVMYEENGGESVVAAESVDSTSLAVYDLKEGSTYNFKFYA----GGVLVGSVDGQTTP---------LLDSDNLKDMLTLVSNDLTVFNTDTVSEMQRLMDLSLETNEEVVVRFTFKNKTLPLNARFVRDGETFSMSTLGVEGSILTPFIPDGSPGQSLSLELSDLSTTTLTFDEINGTVTVDGVTYSTGDKFVLDDR 422          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: Q8QNM5_ESV1K (EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM5_ESV1K)

HSP 1 Score: 98.2 bits (243), Expect = 2.390e-18
Identity = 68/168 (40.48%), Postives = 102/168 (60.71%), Query Frame = 1
Query:  796 NLTPETSYTLGLY--ADDGSGYVLVETTSVTTLPNSAENYDPSQYGSN-GRFDLSTLDSTSFSLLDQ--NNIFTTGESLKIKL-GTSESNVSFVRLGDAVSTDE--SILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTIQDV 1275
            NL  +T Y++  Y   DD    V + +    TLPN A N+D S Y    G FDL  L + S S LD   N+IF+TG+S+ + L G  E+   FV+ GD  + D+  SI +PF++S+G GQ++T+ L+D ++V+VAYDD   ++ IG  T   G S+++DG+K+TI  V
Sbjct:  446 NLLSQTLYSVYTYYSMDDTDPSVPMSSGQYLTLPNVASNHDVSSYADERGGFDLRGLSTESLSALDDVLNDIFSTGDSVTLSLRGKGETKTKFVKRGDTAAIDDGVSIAMPFSASAGPGQSVTLALTDATTVAVAYDDTTEAVLIGGTTYAAGDSLVLDGQKVTIFSV 613          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: Q6XM36_9PHYC (FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM36_9PHYC)

HSP 1 Score: 98.2 bits (243), Expect = 2.510e-18
Identity = 75/219 (34.25%), Postives = 124/219 (56.62%), Query Frame = 1
Query:  640 PEYLEHVAGVTSIKSTVLEVTGAVTYEITITDSLSATRV-VHTGISVGEVTTTNLTPETSYTLGLYAD-DGSGYVLVETTSVTTLPNSAENYDPSQYGS-NGRFDLSTLDSTSFSLLDQ--NNIFTTGESLKIKLGTSESNVSFVRLGDAVST--DESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTIQDV 1275
            PE +  V     I  T   V+GA+ Y++T   + +   + V TG +       +L PET YT+ LY+  DG+ Y    T S TTL N + NY  S + + +G++DLS    +S S L Q    +F+TG++L + +G+      FV++G+  S   +E++ +PFN ++   Q+  + LSDNS+V++++D+ +N++ IG E    G S IVD +KLTI  +
Sbjct:  427 PEGMTLVPKPLFIDVTFAAVSGAIAYKLTKKTTTATDEIDVATGFTDLAQRVRDLQPETEYTISLYSSTDGTTYTPAGTASATTLANVSSNYSASDFSNESGKYDLSKFGKSSRSQLFQLAGTLFSTGDNLVVPVGSGNKTTKFVKVGENTSIVGEEALFIPFNETA---QSANITLSDNSTVTLSFDESDNTVEIGGEKYASGESTIVDQQKLTIVSI 642          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: B5LWE4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC)

HSP 1 Score: 94.7 bits (234), Expect = 3.490e-17
Identity = 96/318 (30.19%), Postives = 143/318 (44.97%), Query Frame = 1
Query:  367 GTWYNIGFTYDGTTQTVYVD---GVPIGSMSVSMITSSNDAFVIGGSPRWSSSFF-FTGSMSDFRVYDYGLTPEEMNTIYTQGPNPPEPQGSNPSPEYLEHVAGVTSIKSTVLEVTGAVTYEIT---ITDSLSATRVVHTGISVGEVTTTNLTPETSYTLGLYA--DDGSGYVLVETTSVTTLPNSAENYDPSQYGSNG--RFDLSTLDSTSFSLLDQ--NNIFTTGESLKIKLGTSESNVSFVRLGDAVSTD--ESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLTIGTETVQIGSSIIVDGKKLTIQDV 1275
            G+ Y+ G  YD     VY+D   G+       + + S+ D       P  S      TG+ S+   YD+        TI                    E VA    +     EV GA  Y +T     D +  T  V T  S  E    +L  E+ Y   +Y+  D  S Y L   +S TTL N + NY    Y + G  +FDLS+ D  + +   +  N +F TG+++ I +G+      FV+LG +V  D   ++L+PF  + GS QT ++ LSDNSSV++ YD+   ++ IG      G S IVD +KLT+ +V
Sbjct:  354 GSTYHAGLPYDHGETMVYIDTEFGLTYTDSLSTALFSTMDTSAFTLDPETSLPVIALTGTDSESVAYDWEFVFGNNTTI--------------------EFVARPLHVDVKFGEVPGATQYRLTKQLSPDGVETT--VDTDFSTFEKRAESLQSESVYVFRVYSRTDPESEYTLAYQSSTTTLANVSSNYSAGDYKAEGEDQFDLSSFDKDTMANFHEVMNEVFDTGDAIVIPIGSETKKTKFVKLGGSVPIDGESAVLIPFLETGGSAQTASLTLSDNSSVTLTYDETAGTIGIGGVDYSPGESTIVDSQKLTLVEV 649          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: A0A7V6LGU9_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7V6LGU9_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 1.790e-11
Identity = 64/214 (29.91%), Postives = 104/214 (48.60%), Query Frame = 1
Query:   22 YKFDESTELLATDSSGNSNTLVNGGGVVSVADA-TYGDVAYFDGVNSPMTLVTPPSSMTGTVHRTFSFWMKRDNQ-DLEIFHGQGLASGDE---LRVQFQGGVRLY---NNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEE----MNTIYTQGPN---PPE 618
            Y FD+   L A DSS   N LV G G  + +DA  +G   Y +G ++ +    P    TG+   T + WM+ D   +   F G G  + ++   LR+    G++ Y   N+ ++  ++ +   G W++I  T+DG TQT+YVDGVP+ + S + + +    FV+G   + +S   F G + +  + D   T       M T+   G N   PPE
Sbjct:  232 YTFDDPNHLGA-DSSARDNHLVAGTGSPTYSDAGVFGGALYVNGSSTLIRQTFPAGVPTGSTPYTIALWMRDDGSPNTGGFCGWGNNANNQCNNLRLAGAHGLKNYWYANDFEVSGLSTNLKDGEWHHIAVTWDGLTQTMYVDGVPVRTTSRTGLNAQGINFVVG---KTTSDVGFKGYIDNLLIADRAFTAAGIVAIMQTLMHSGSNGLLPPE 441          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: UPI001CC33372 (polysaccharide deacetylase family protein n=1 Tax=Geobacter sp. AOG2 TaxID=1566347 RepID=UPI001CC33372)

HSP 1 Score: 75.5 bits (184), Expect = 8.200e-11
Identity = 93/301 (30.90%), Postives = 141/301 (46.84%), Query Frame = 1
Query:    1 TMSLVLRYKFDESTELLATDSSGNS-NTLVNGGGVVSVADATYGDVAYFDGVNSPMTLVTPPSS--MTGTVHRTFSFWMKRDN----------QDLEIFHGQGL-ASGDELRVQFQGGVRLYNNGQLQN--IAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSM-ITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNT-IYTQGPN---PPEPQGSNPSPEYLEHVAGVTSIKSTVLEVT----GAVTYEITITDSLSATRVVHTGISV--GEVTTTNLTPETSYT 822
            T  LV  Y F+E T     D+SGN  N  ++G   V+  D   G+   F+GVN+   LVT P+S  +  T   T   W+   N          ++   F+  GL  S     V F     +  NG      +  +    TW ++  TYDGTT +VYV+G+  GS ++S  I +S+ A  IGG+  W++ +F TG + + R++D  LT  E+ T + T   N   PP   G + +P  L  V G +S+ +  L       GAV   +T+T S ++  +V   + V  G  +TT     TS T
Sbjct:  618 TAGLVAAYAFNEGTGTTVADASGNGLNGTISGASWVAGKD---GNALSFNGVNN---LVTVPASNVLDLTTGMTLEGWVYPTNSSGKWGCVLMKETSNFYAYGLYISPANHPVVF-----MVINGSEHGFEVPTNLTANTWSHLAATYDGTTLSVYVNGILKGSETISATIPASSGALRIGGNSIWATEYF-TGIIDNVRIFDRALTNAEIQTDVNTPVGNVSAPPALSGVSLAPGSL--VGGNSSVATVTLSAPAPSEGAV---VTLTSSNASVAMVPESVMVPAGSTSTTFTISTTSVT 901          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: A0A522VBI9_9GAMM (LamG domain-containing protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A522VBI9_9GAMM)

HSP 1 Score: 74.3 bits (181), Expect = 1.660e-10
Identity = 63/219 (28.77%), Postives = 102/219 (46.58%), Query Frame = 1
Query:   64 SGNSNTLVNGGGVVSVADATYGDV--AY-FDGVNSPMTLVTPPSSMTGTVHRTFSFWMKRDNQD------LEIFHGQGLASGDELRVQFQGGVRLYNNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSMITSSNDAFVIGGSPRWSSS-----FFFTGSMSDFRVYDYGLTPEEMNTIYTQGPNPPEPQGSNPSPEYLEHVAGVTSI 678
            +GN+ T+ N     ++ +  +G+   AY FDG  S + L   P +  G   R+   W K  +Q       +    G   A    L +  Q G+  Y N    N   + A G W+ +G T+DG+T +++VDG+   S   +  T+ N+ F+  G P    S      +F G++ D R+Y+  LTPEE+  +YT   N  +  G+ P P  L  +  +T I
Sbjct:   45 AGNNGTINN----ATLTEDRFGNSNSAYAFDGSTSYIDLTGKPIAQQGNGSRSIFVWCKTTDQKSFQRVVVTGTTGSNRAFNMLLWINGQPGIMGYANDLYMNTG-TIANGEWHFVGATFDGSTSSIWVDGILKASKQTTYNTTGNNNFI--GRPNDDPSNAGTETYFNGNIDDVRIYNRALTPEEIQQLYTA--NGTDTTGT-PDPATLPKIDSITPI 253          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Match: A0A4P5YBV2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A4P5YBV2_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 8.470e-10
Identity = 56/200 (28.00%), Postives = 88/200 (44.00%), Query Frame = 1
Query:    7 SLVLRYKFDESTELLATDSSGNSNTLVNGGGVVSVADATYGDVAYFDGVNSPMTLVTPPSSMTGTVHRTFSFWMKRDNQD-----LEIFHGQGLASGDELRVQFQGGVRLYNNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSVSMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNTI 591
            +LVL +K DE++  +A D+SG SN+   GGG   VA    G    FDG +  +          G    T + W+K          + +    G+ +   L      GV  +       ++   A GTW ++  T+DG TQT YVDGV +GS S +       +  +  +  W ++F   G + D RVY   L   E++ +
Sbjct: 1296 NLVLNWKLDETSGTVAADASGRSNSGAVGGGATWVA-GKVGGALQFDGNSGAVATANVGGLPGGNQAHTLAAWVKVKTLPPKRAWIALLGDAGVGAHHWLIN--SNGVTQFGAWNGNQVSPVLAVGTWKHLAVTFDGATQTGYVDGVAVGSTSATYQLK-GVSLKVARAVDWENAF--NGVVDDIRVYSRALNASEVSAL 1489          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QNC3_ESV1K1.150e-3342.18EsV-1-159 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
Q6XLW1_9PHYC1.320e-2325.78FirrV-1-E1 n=1 Tax=Feldmannia irregularis virus a ... [more]
B5LWA1_9PHYC9.800e-2025.73Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QNM5_ESV1K2.390e-1840.48EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
Q6XM36_9PHYC2.510e-1834.25FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWE4_9PHYC3.490e-1730.19Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A7V6LGU9_9BACT1.790e-1129.91Uncharacterized protein n=1 Tax=Lentisphaerae bact... [more]
UPI001CC333728.200e-1130.90polysaccharide deacetylase family protein n=1 Tax=... [more]
A0A522VBI9_9GAMM1.660e-1028.77LamG domain-containing protein n=1 Tax=Methylococc... [more]
A0A4P5YBV2_9BACT8.470e-1028.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1646contigE-siliculosus-1a_F_contig1646:3018..4323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1275
Model size1278
Exons2
Ec32 orthologEc-00_006130.1
Ec32 ortholog descriptionEsV-1-159 galactose-binding domain-like protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001
Best eggNOG OGNA|NA|NA
Best tax levelPaenibacillaceae
COG Functional cat.N
EggNOG OGs1VA5K@1239,277KK@186822,4IUF6@91061,COG0613@1,COG0613@2,COG1409@1,COG1409@2,COG2247@1,COG2247@2,COG3507@1,COG3507@2,COG3940@1,COG3940@2,COG5184@1,COG5184@2,COG5492@1,COG5492@2
EggNOG free text desc.S-layer homology domain
KEGG Pathwayko02024,map02024
KEGG koko:K20276
Seed eggNOG ortholog1034769.KB910518_gene667
Seed ortholog evalue7.5e-10
Seed ortholog score72.0
Taxonomic scopeBacteria
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1646.3655.1prot_E-siliculosus-1a_F_contig1646.3655.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1646 3018..4320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928153.0468986-CDS-E-siliculosus-1a_F_contig1646:3017..33081622928153.0468986-CDS-E-siliculosus-1a_F_contig1646:3017..3308Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 3018..3308 -
1696318825.7436597-CDS-E-siliculosus-1a_F_contig1646:3017..33081696318825.7436597-CDS-E-siliculosus-1a_F_contig1646:3017..3308Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 3018..3308 -
1622928153.0662243-CDS-E-siliculosus-1a_F_contig1646:3336..43201622928153.0662243-CDS-E-siliculosus-1a_F_contig1646:3336..4320Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 3337..4320 -
1696318825.7619886-CDS-E-siliculosus-1a_F_contig1646:3336..43201696318825.7619886-CDS-E-siliculosus-1a_F_contig1646:3336..4320Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 3337..4320 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928153.0780432-UTR-E-siliculosus-1a_F_contig1646:4320..43231622928153.0780432-UTR-E-siliculosus-1a_F_contig1646:4320..4323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1646 4321..4323 -
1696318825.7716928-UTR-E-siliculosus-1a_F_contig1646:4320..43231696318825.7716928-UTR-E-siliculosus-1a_F_contig1646:4320..4323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1646 4321..4323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1646.3655.1

>prot_E-siliculosus-1a_F_contig1646.3655.1 ID=prot_E-siliculosus-1a_F_contig1646.3655.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=425bp
MSLVLRYKFDESTELLATDSSGNSNTLVNGGGVVSVADATYGDVAYFDGV
NSPMTLVTPPSSMTGTVHRTFSFWMKRDNQDLEIFHGQGLASGDELRVQF
QGGVRLYNNGQLQNIAQSFATGTWYNIGFTYDGTTQTVYVDGVPIGSMSV
SMITSSNDAFVIGGSPRWSSSFFFTGSMSDFRVYDYGLTPEEMNTIYTQG
PNPPEPQGSNPSPEYLEHVAGVTSIKSTVLEVTGAVTYEITITDSLSATR
VVHTGISVGEVTTTNLTPETSYTLGLYADDGSGYVLVETTSVTTLPNSAE
NYDPSQYGSNGRFDLSTLDSTSFSLLDQNNIFTTGESLKIKLGTSESNVS
FVRLGDAVSTDESILVPFNSSSGSGQTITMNLSDNSSVSVAYDDVNNSLT
IGTETVQIGSSIIVDGKKLTIQDV*
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mRNA from alignment at E-siliculosus-1a_F_contig1646:3018..4323-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1646.3655.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3655.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1306bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:3018..4323- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGATGTCTCTTGTACTCAGATATAAGTTTGACGAATCCACTGAACTCTT GGCGACAGACTCCTCGGGTAATTCAAACACATTGGTCAATGGGGGTGGAG TGGTGTCAGTTGCCGATGCCACGTACGGAGATGTAGCATACTTTGATGGT GTTAATTCTCCCATGACTCTTGTGACACCCCCATCTTCTATGACCGGTAC TGTACACAGGACTTTCTCTTTTTGGATGAAAAGGGATAACCAAGATCTTG AAATTTTCCATGGCCAGGGGTTGGCGTCAGGGGACGAACTACGAGTACAA TTTCAAGGTGGGGTTCGTTTATACAACAATGGCCAATTACAGAACATAGC ACAATCCTTTGCAACAGGTACGTGGTACAATATTGGATTCACATATGATG GCACAACACAAACCGTCTACGTAGATGGTGTTCCAATTGGATCTATGTCT GTGAGTATGATAACAAGCTCCAATGATGCTTTCGTAATAGGCGGTTCTCC TAGGTGGTCTAGCAGTTTTTTTTTCACCGGAAGCATGTCAGACTTTAGAG TTTATGATTATGGGTTAACTCCCGAAGAAATGAATACTATTTACACACAG GGACCCAACCCCCCTGAGCCACAGGGATCCAACCCCTCCCCCGAATACTT GGAACATGTAGCAGGGGTAACGTCAATTAAGTCGACTGTATTGGAGGTAA CCGGGGCAGTTACATACGAGATAACAATTACTGATTCTCTATCCGCAACT AGAGTAGTCCACACTGGCATATCTGTTGGTGAAGTTACTACAACCAATTT AACTCCTGAAACGTCTTATACTTTAGGATTGTACGCGGATGATGGAAGTG GCTACGTATTAGTGGAAACAACAAGCGTCACAACTTTACCCAATTCTGCT GAAAATTATGATCCTAGTCAATATGGGAGTAATGGTAGATTCGACCTAAG TACACTTGATTCTACCAGTTTTTCTCTTCTAGACCAAGTGATAAACAATA TTTTTACAACTGGAGAACAATATTTTTACAACTGGAGAATCTCTTAAAAT AAAATTGGGTACATCTGAATCTAACGTATCATTCGTTAGACTGGGGGATG CTGTTTCAACGGATGAATCGATTCTCGTCCCATTCAATAGTTCTTCCGGA AGTGGTCAAACAATTACCATGAATCTCTCCGATAATTCTTCTGTATCCGT AGCTTATGATGATGTAAACAATTCACTCACAATTGGGACTGAAACTGTTC AGATTGGGTCGAGTATTATAGTAGATGGTAAAAAACTAACCATTCAGGAT GTTTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1646:3018..4323-

>mRNA_E-siliculosus-1a_F_contig1646.3655.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3655.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2550bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:3018..4323- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTCTTGTACTCAGATATAAGTTTGACGAATCCACTGAACTCTTGGC
GACAGACTCCTCGGGTAATTCAAACACATTGGTCAATGGGGGTGGAGTGG
TGTCAGTTGCCGATGCCACGTACGGAGATGTAGCATACTTTGATGGTGTT
AATTCTCCCATGACTCTTGTGACACCCCCATCTTCTATGACCGGTACTGT
ACACAGGACTTTCTCTTTTTGGATGAAAAGGGATAACCAAGATCTTGAAA
TTTTCCATGGCCAGGGGTTGGCGTCAGGGGACGAACTACGAGTACAATTT
CAAGGTGGGGTTCGTTTATACAACAATGGCCAATTACAGAACATAGCACA
ATCCTTTGCAACAGGTACGTGGTACAATATTGGATTCACATATGATGGCA
CAACACAAACCGTCTACGTAGATGGTGTTCCAATTGGATCTATGTCTGTG
AGTATGATAACAAGCTCCAATGATGCTTTCGTAATAGGCGGTTCTCCTAG
GTGGTCTAGCAGTTTTTTTTTCACCGGAAGCATGTCAGACTTTAGAGTTT
ATGATTATGGGTTAACTCCCGAAGAAATGAATACTATTTACACACAGGGA
CCCAACCCCCCTGAGCCACAGGGATCCAACCCCTCCCCCGAATACTTGGA
ACATGTAGCAGGGGTAACGTCAATTAAGTCGACTGTATTGGAGGTAACCG
GGGCAGTTACATACGAGATAACAATTACTGATTCTCTATCCGCAACTAGA
GTAGTCCACACTGGCATATCTGTTGGTGAAGTTACTACAACCAATTTAAC
TCCTGAAACGTCTTATACTTTAGGATTGTACGCGGATGATGGAAGTGGCT
ACGTATTAGTGGAAACAACAAGCGTCACAACTTTACCCAATTCTGCTGAA
AATTATGATCCTAGTCAATATGGGAGTAATGGTAGATTCGACCTAAGTAC
ACTTGATTCTACCAGTTTTTCTCTTCTAGACCAAATGTCTCTTGTACTCA
GATATAAGTTTGACGAATCCACTGAACTCTTGGCGACAGACTCCTCGGGT
AATTCAAACACATTGGTCAATGGGGGTGGAGTGGTGTCAGTTGCCGATGC
CACGTACGGAGATGTAGCATACTTTGATGGTGTTAATTCTCCCATGACTC
TTGTGACACCCCCATCTTCTATGACCGGTACTGTACACAGGACTTTCTCT
TTTTGGATGAAAAGGGATAACCAAGATCTTGAAATTTTCCATGGCCAGGG
GTTGGCGTCAGGGGACGAACTACGAGTACAATTTCAAGGTGGGGTTCGTT
TATACAACAATGGCCAATTACAGAACATAGCACAATCCTTTGCAACAGGT
ACGTGGTACAATATTGGATTCACATATGATGGCACAACACAAACCGTCTA
CGTAGATGGTGTTCCAATTGGATCTATGTCTGTGAGTATGATAACAAGCT
CCAATGATGCTTTCGTAATAGGCGGTTCTCCTAGGTGGTCTAGCAGTTTT
TTTTTCACCGGAAGCATGTCAGACTTTAGAGTTTATGATTATGGGTTAAC
TCCCGAAGAAATGAATACTATTTACACACAGGGACCCAACCCCCCTGAGC
CACAGGGATCCAACCCCTCCCCCGAATACTTGGAACATGTAGCAGGGGTA
ACGTCAATTAAGTCGACTGTATTGGAGGTAACCGGGGCAGTTACATACGA
GATAACAATTACTGATTCTCTATCCGCAACTAGAGTAGTCCACACTGGCA
TATCTGTTGGTGAAGTTACTACAACCAATTTAACTCCTGAAACGTCTTAT
ACTTTAGGATTGTACGCGGATGATGGAAGTGGCTACGTATTAGTGGAAAC
AACAAGCGTCACAACTTTACCCAATTCTGCTGAAAATTATGATCCTAGTC
AATATGGGAGTAATGGTAGATTCGACCTAAGTACACTTGATTCTACCAGT
TTTTCTCTTCTAGACCAAAACAATATTTTTACAACTGGAGAATCTCTTAA
AATAAAATTGGGTACATCTGAATCTAACGTATCATTCGTTAGACTGGGGG
ATGCTGTTTCAACGGATGAATCGATTCTCGTCCCATTCAATAGTTCTTCC
GGAAGTGGTCAAACAATTACCATGAATCTCTCCGATAATTCTTCTGTATC
CGTAGCTTATGATGATGTAAACAATTCACTCACAATTGGGACTGAAACTG
TTCAGATTGGGTCGAGTATTATAGTAGATGGTAAAAAACTAACCATTCAG
GATGTTTAGAACAATATTTTTACAACTGGAGAATCTCTTAAAATAAAATT
GGGTACATCTGAATCTAACGTATCATTCGTTAGACTGGGGGATGCTGTTT
CAACGGATGAATCGATTCTCGTCCCATTCAATAGTTCTTCCGGAAGTGGT
CAAACAATTACCATGAATCTCTCCGATAATTCTTCTGTATCCGTAGCTTA
TGATGATGTAAACAATTCACTCACAATTGGGACTGAAACTGTTCAGATTG
GGTCGAGTATTATAGTAGATGGTAAAAAACTAACCATTCAGGATGTTTAG
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