mRNA_E-siliculosus-1a_F_contig1643.3643.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1643.3643.1
Unique NamemRNA_E-siliculosus-1a_F_contig1643.3643.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.790e-37
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    1 VVFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLRSTSMAKV 213
            VVFFGPLGDNS+NLISY QSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLR+TSMAK+
Sbjct:  984 VVFFGPLGDNSSNLISYLQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLRNTSMAKL 1054
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.470e-33
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 VVFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLRSTSMAKV 213
            VVFFGPLG+NSTNLI Y QSIP+TVPIRDHVNPATWMLEVIGAGTTGK+NPQMYAD YK+SKLR  SMAK+
Sbjct: 1072 VVFFGPLGENSTNLICYLQSIPNTVPIRDHVNPATWMLEVIGAGTTGKSNPQMYADSYKRSKLRKNSMAKL 1142
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.460e-29
Identity = 60/90 (66.67%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 VVFFGPLGDNSTNLISYFQ-------------------SIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLRSTSMAKV 213
            VVFFGPLG+NSTNLI Y Q                   SIP+TVPIRDHVNPATWMLEVIGAGTTGK+NPQMYAD YK+SKLR  SMA++
Sbjct:  288 VVFFGPLGENSTNLICYLQVKNTNTHIPRSCNFICYLQSIPNTVPIRDHVNPATWMLEVIGAGTTGKSNPQMYADSYKRSKLRKNSMAEL 377
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: D7FQN0_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN0_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.260e-22
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    4 VFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLRSTSMAKV 213
            VFFG LG  S+ LISY  S+P+T  IRD+VNPATWMLE IGAGTTGK +PQ+YAD YKKSKL+S ++ ++
Sbjct:  222 VFFGELGAESSKLISYLLSVPNTPSIRDNVNPATWMLECIGAGTTGKVDPQVYADVYKKSKLKSGTLREL 291
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: A0A835ZIR5_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.770e-17
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 VVFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLRSTSMAKV 213
            VV+FG LG +S+ LI++  ++P T PI    NPATWMLE IGAGT+   NPQMYAD+YK  +L+ + +A+V
Sbjct:  929 VVYFGELGVHSSALIAHISAVPGTAPIAPRANPATWMLEQIGAGTSSHANPQMYADWYKNGQLKRSVVAEV 999
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: A0A835Z0F1_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.460e-16
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    4 VFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLR 192
            V+FG LG +S+ LIS+  SIP T PI ++ NPATWMLE IGAGT+   NPQ YAD+Y  S+L+
Sbjct: 1004 VYFGELGTHSSALISHLSSIPGTRPIANNANPATWMLEQIGAGTSTSANPQAYADWYSNSQLK 1066
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: A0A7S2WC45_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC45_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.560e-15
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 VVFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADF---YKKSKL 189
            VV+FG LG+++ NLISYFQ IP T P  D  NPATWMLEVIGAGTT  T     AD+   Y++SKL
Sbjct: 1158 VVYFGELGNDAENLISYFQGIPGTPPCPDGYNPATWMLEVIGAGTTQNTVDTEQADYGAIYRRSKL 1223
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: A0A7S3GZP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZP0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.900e-15
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    4 VFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLRSTSMAKV 213
            VFFG LG++S NL+ YFQSI    P    VNPATWMLEVIGAGT+  T+   +   YK+S L   +  KV
Sbjct:   19 VFFGDLGEHSINLVEYFQSIEGVTPKAKGVNPATWMLEVIGAGTSAATSTTDFHAHYKQSALCEANTIKV 88
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: A0A1V9YVQ3_9STRA (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVQ3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.170e-14
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    4 VFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKT-NPQMYADFYKKSKLRSTSMA 207
            V+FGPLG  S++LI Y ++IP T PI+   NPATWMLEVIGAGTT    NPQ +A  + +S  +S  +A
Sbjct: 2297 VYFGPLGTGSSHLIEYLEAIPGTEPIQRGHNPATWMLEVIGAGTTSSNDNPQDFAKIFDQSSAKSNLVA 2365
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BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Match: A0A7S0P5N2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P5N2_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-14
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    4 VFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQM-YADFYKKSKL 189
            VFFGPLGD + NL +YF ++P  VP RD  NPATWML+VIGAGT G     + +   YK S L
Sbjct:    1 VFFGPLGDKAHNLCAYFAALPGVVPCRDGYNPATWMLDVIGAGTGGAQAEAVDFVSAYKSSAL 63
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1643.3643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFP2_ECTSI1.790e-3794.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFN4_ECTSI1.470e-3385.92Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
A0A6H5K7U8_9PHAE5.460e-2966.67ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FQN0_ECTSI2.260e-2265.71ABC transporter domain-containing protein n=1 Tax=... [more]
A0A835ZIR5_9STRA1.770e-1753.52ABC-2 type transporter-domain-containing protein n... [more]
A0A835Z0F1_9STRA5.460e-1658.73ABC-2 type transporter-domain-containing protein n... [more]
A0A7S2WC45_9STRA3.560e-1560.61Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S3GZP0_9STRA7.900e-1552.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1V9YVQ3_9STRA3.170e-1453.62ATP-binding Cassette (ABC) Superfamily n=1 Tax=Thr... [more]
A0A7S0P5N2_9EUKA3.900e-1455.56Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1643contigE-siliculosus-1a_F_contig1643:9230..10876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size222
Model size222
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.V
Ec32 orthologEc-04_001470.2
Ec32 ortholog descriptionpleiotropic drug resistance transporter
EggNOG OGsCOG1131@1,KOG0065@2759
EggNOG free text desc.ATPase activity
Seed eggNOG ortholog2880.D8LFP2
Seed ortholog evalue6e-32
Seed ortholog score142.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1643.3643.1prot_E-siliculosus-1a_F_contig1643.3643.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1643 9230..10876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928151.0155234-CDS-E-siliculosus-1a_F_contig1643:9229..93071622928151.0155234-CDS-E-siliculosus-1a_F_contig1643:9229..9307Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1643 9230..9307 -
1696318824.9590242-CDS-E-siliculosus-1a_F_contig1643:9229..93071696318824.9590242-CDS-E-siliculosus-1a_F_contig1643:9229..9307Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1643 9230..9307 -
1622928151.0298257-CDS-E-siliculosus-1a_F_contig1643:9921..100081622928151.0298257-CDS-E-siliculosus-1a_F_contig1643:9921..10008Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1643 9922..10008 -
1696318824.9712963-CDS-E-siliculosus-1a_F_contig1643:9921..100081696318824.9712963-CDS-E-siliculosus-1a_F_contig1643:9921..10008Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1643 9922..10008 -
1622928151.0431592-CDS-E-siliculosus-1a_F_contig1643:10819..108761622928151.0431592-CDS-E-siliculosus-1a_F_contig1643:10819..10876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1643 10820..10876 -
1696318824.9789698-CDS-E-siliculosus-1a_F_contig1643:10819..108761696318824.9789698-CDS-E-siliculosus-1a_F_contig1643:10819..10876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1643 10820..10876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1643.3643.1

>prot_E-siliculosus-1a_F_contig1643.3643.1 ID=prot_E-siliculosus-1a_F_contig1643.3643.1|Name=mRNA_E-siliculosus-1a_F_contig1643.3643.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=74bp
VVFFGPLGDNSTNLISYFQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTN
PQMYADFYKKSKLRSTSMAKVWQ*
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mRNA from alignment at E-siliculosus-1a_F_contig1643:9230..10876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1643.3643.1 ID=mRNA_E-siliculosus-1a_F_contig1643.3643.1|Name=mRNA_E-siliculosus-1a_F_contig1643.3643.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1647bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1643:9230..10876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGTATTCTTCGGGCCTCTGGGAGACAACAGCACCAACCTCATCAGCTA
CTTCCAGGTAGGAAGACGAACAGTAATAGGTTCCTCGCTGATGCTTATAA
ATAAAGTTATTGTTCTTGGGGAGAACGGCTGCACGATCTTATCTGCTACC
TCCAGGTTGAAGAGGAACGACAAGAATGGCTGCTATCCTCATCGTTCTAA
AAGCTAGTTGTGGGTAGCGTGATCTTTTCCTTGCTGTTCTGCGAACAATC
CCTCCTATTGCACCCCGAAGCATTACTGTACACGAAAGATCGCTGCTTCC
CCCTGGGTCTCCAAGGCTTGAGCGATGGATAGTCAGGCCTTTGGTGCACC
CGCACACTCTCACGCGGTACTTTGTGAAATGGTGTGTGGGACGAGCACCG
GGGGAACTGAGACGTATTCAGCAAGGAACCGGAACATACGATAACCGTGG
TGTCCGTCGTGGTTCTACCCGGGTCTTACGCCGGGGGAAAGGTTTCTTGA
GCGAAGGCTGTTTTAGAGACAGACGTTGGAGTCGAGTTGCGTTGAAAGAG
ACGTTTAGTTGCCGACAGCTCCAGCACCTCGCAAGCAACCTCAGCCCACA
GAGCTGCAAAACGCTCTTCACGTGGTGTACGAGAGTGTCAGATGCAGCAC
CACGATAACTGGTCTACATTCTCCCAAACCCCGGTGATTATTTGCCCCTC
TGCAACCACGTGCCATCGTGTGCTTTTGCGAGCAGCTCGAAACGATTTGT
GTCGAACGTCGAGATCTACTTTGTTTCACGTTTGTCACAGTATCACAGTT
ATGTCATTGCGTGCCTTCTCATTGCCCCCCCCCGCTGCTGCCACTCCCGA
CAAATATTTGTTGTGCAGTCCATCCCCAGCACCGTTCCGATCCGTGATCA
CGTCAATCCGGCAACGTGGATGCTAGAGGTCATCGGTGCTGGTACCACCG
GCAAGGTAGGCGCGCCTTGTCCAAATGTTGCGGTTGTTGTTGTTGTTGTT
GTTGCCGTTGTCGTCGTTGTTCTCTGTTGCTGCTCTTGTTATTACGTATT
GTTGTTGTTGCCATCATTTGTTGGTGTCGTTGGAGTTGTTCCTATCGATA
TCGATCATTGCGGTTGGCGGTGAGCTTTGCTCCTGCGATGCTACACCGAA
ACCGTGAAAACGTTAACGACCAGCAGCGTGAACAGCCAATCTTGGCCCGA
GGTTCTGTTCTTGGTTTCGTCGCTGCCGTTGAGCACCTCCGGTAGCCACG
GGTTCGAGTCTCTCTTGTGAAAAATATCTCAACCTAGAGGAAGGAACCTC
ATTGTCGCGAGAAAATACTGAACGAGGAGAGGGAAGTGCTGAGGCCTTTC
TCTACTTAGCAGTTGAAGAGAAAGAGATGTCGCCATCTTGAAGAGCTGCA
TCAAGACCTGAATCCGGCAGATTTGAACCAGAGGCGTTGTCTTCTTTGAC
AGTTGCGTCGAAGACCCCAATGAGCCTCGGTACCTGGCCTGATGAACTAA
CATAACTGATTTGCCTTGCCCTGCACGCGTCGCTATTTTTGTTGTTGCTG
TTTTTTCTCGTGTCGACAGACCAACCCGCAGATGTACGCGGACTTCTACA
AGAAGAGCAAGCTCAGGAGCACTTCCATGGCAAAGGTGTGGCAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1643:9230..10876-

>mRNA_E-siliculosus-1a_F_contig1643.3643.1 ID=mRNA_E-siliculosus-1a_F_contig1643.3643.1|Name=mRNA_E-siliculosus-1a_F_contig1643.3643.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1643:9230..10876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGTATTCTTCGGGCCTCTGGGAGACAACAGCACCAACCTCATCAGCTA
CTTCCAGGTCGTATTCTTCGGGCCTCTGGGAGACAACAGCACCAACCTCA
TCAGCTACTTCCAGTCCATCCCCAGCACCGTTCCGATCCGTGATCACGTC
AATCCGGCAACGTGGATGCTAGAGGTCATCGGTGCTGGTACCACCGGCAA
GTCCATCCCCAGCACCGTTCCGATCCGTGATCACGTCAATCCGGCAACGT
GGATGCTAGAGGTCATCGGTGCTGGTACCACCGGCAAGACCAACCCGCAG
ATGTACGCGGACTTCTACAAGAAGAGCAAGCTCAGGAGCACTTCCATGGC
AAAGGTGTGGCAGTGAACCAACCCGCAGATGTACGCGGACTTCTACAAGA
AGAGCAAGCTCAGGAGCACTTCCATGGCAAAGGTGTGGCAGTGA
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