mRNA_E-siliculosus-1a_F_contig1642.3641.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1642.3641.1
Unique NamemRNA_E-siliculosus-1a_F_contig1642.3641.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1642.3641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1642contigE-siliculosus-1a_F_contig1642:19386..19998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size471
Model size613
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1642.3641.1prot_E-siliculosus-1a_F_contig1642.3641.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1642 19468..19938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928150.4576159-UTR-E-siliculosus-1a_F_contig1642:19385..194671622928150.4576159-UTR-E-siliculosus-1a_F_contig1642:19385..19467Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1642 19386..19467 +
1696318824.7429125-UTR-E-siliculosus-1a_F_contig1642:19385..194671696318824.7429125-UTR-E-siliculosus-1a_F_contig1642:19385..19467Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1642 19386..19467 +
1622928150.4891465-UTR-E-siliculosus-1a_F_contig1642:19938..199981622928150.4891465-UTR-E-siliculosus-1a_F_contig1642:19938..19998Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1642 19939..19998 +
1696318824.761039-UTR-E-siliculosus-1a_F_contig1642:19938..199981696318824.761039-UTR-E-siliculosus-1a_F_contig1642:19938..19998Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1642 19939..19998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928150.4752674-CDS-E-siliculosus-1a_F_contig1642:19467..199381622928150.4752674-CDS-E-siliculosus-1a_F_contig1642:19467..19938Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1642 19468..19938 +
1696318824.7518013-CDS-E-siliculosus-1a_F_contig1642:19467..199381696318824.7518013-CDS-E-siliculosus-1a_F_contig1642:19467..19938Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1642 19468..19938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1642.3641.1

>prot_E-siliculosus-1a_F_contig1642.3641.1 ID=prot_E-siliculosus-1a_F_contig1642.3641.1|Name=mRNA_E-siliculosus-1a_F_contig1642.3641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=157bp
MTCVCIVFFVLFPLHFLRDASQGRQKQAAGGNMRGCRTTLIVSGRFARDL
PGVPVFRSAFYFVVFDCCCPCCVARLRLIVPVSLQTAIGSSSFEDAFLFF
LWSIGVEEAVGFWIYRPYRVGGCWESIIMPQIIRIVYCTPLMGHYLLRGG
GIARRL*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1642:19386..19998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1642.3641.1 ID=mRNA_E-siliculosus-1a_F_contig1642.3641.1|Name=mRNA_E-siliculosus-1a_F_contig1642.3641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=613bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1642:19386..19998+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTCCTCTCTCTGCTGGTTGAGCATCCATCCTCCTCGTCGTGCGAACGTA
GTCTTTTTTTTTGTTCCTTTTGCAAGCACCTCATGACGTGTGTTTGTATT
GTTTTTTTTGTGTTGTTTCCTTTGCATTTCCTCCGCGATGCCAGTCAAGG
CAGGCAGAAGCAGGCAGCAGGCGGTAATATGCGCGGTTGTAGAACTACTT
TGATCGTAAGTGGTCGCTTTGCCCGGGACCTACCTGGGGTTCCCGTTTTT
CGCAGTGCCTTTTATTTCGTCGTTTTTGATTGTTGTTGTCCTTGTTGCGT
TGCTCGCCTGCGATTGATTGTCCCTGTTTCGCTACAAACAGCGATCGGCA
GCAGCAGTTTTGAAGATGCATTTTTGTTTTTTTTGTGGTCGATTGGTGTA
GAGGAGGCTGTAGGCTTTTGGATATATCGGCCATATCGTGTGGGTGGGTG
TTGGGAAAGCATTATCATGCCCCAAATCATCAGAATCGTTTACTGCACAC
CTCTCATGGGGCACTATTTACTTAGGGGTGGGGGGATAGCAAGACGCCTT
TAGAAAAAAAAAATAAGGAGTGATCAGGTTGATCAGGTTGTGGAAGAGAA
AATATAGAACGGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1642:19386..19998+

>mRNA_E-siliculosus-1a_F_contig1642.3641.1 ID=mRNA_E-siliculosus-1a_F_contig1642.3641.1|Name=mRNA_E-siliculosus-1a_F_contig1642.3641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1642:19386..19998+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGTGTGTTTGTATTGTTTTTTTTGTGTTGTTTCCTTTGCATTTCCT
CCGCGATGCCAGTCAAGGCAGGCAGAAGCAGGCAGCAGGCGGTAATATGC
GCGGTTGTAGAACTACTTTGATCGTAAGTGGTCGCTTTGCCCGGGACCTA
CCTGGGGTTCCCGTTTTTCGCAGTGCCTTTTATTTCGTCGTTTTTGATTG
TTGTTGTCCTTGTTGCGTTGCTCGCCTGCGATTGATTGTCCCTGTTTCGC
TACAAACAGCGATCGGCAGCAGCAGTTTTGAAGATGCATTTTTGTTTTTT
TTGTGGTCGATTGGTGTAGAGGAGGCTGTAGGCTTTTGGATATATCGGCC
ATATCGTGTGGGTGGGTGTTGGGAAAGCATTATCATGCCCCAAATCATCA
GAATCGTTTACTGCACACCTCTCATGGGGCACTATTTACTTAGGGGTGGG
GGGATAGCAAGACGCCTTTAGATGACGTGTGTTTGTATTGTTTTTTTTGT
GTTGTTTCCTTTGCATTTCCTCCGCGATGCCAGTCAAGGCAGGCAGAAGC
AGGCAGCAGGCGGTAATATGCGCGGTTGTAGAACTACTTTGATCGTAAGT
GGTCGCTTTGCCCGGGACCTACCTGGGGTTCCCGTTTTTCGCAGTGCCTT
TTATTTCGTCGTTTTTGATTGTTGTTGTCCTTGTTGCGTTGCTCGCCTGC
GATTGATTGTCCCTGTTTCGCTACAAACAGCGATCGGCAGCAGCAGTTTT
GAAGATGCATTTTTGTTTTTTTTGTGGTCGATTGGTGTAGAGGAGGCTGT
AGGCTTTTGGATATATCGGCCATATCGTGTGGGTGGGTGTTGGGAAAGCA
TTATCATGCCCCAAATCATCAGAATCGTTTACTGCACACCTCTCATGGGG
CACTATTTACTTAGGGGTGGGGGGATAGCAAGACGCCTTTAG
back to top