mRNA_E-siliculosus-1a_F_contig1642.3638.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1642.3638.1
Unique NamemRNA_E-siliculosus-1a_F_contig1642.3638.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: A0A6H5KQE7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE7_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 4.720e-104
Identity = 165/191 (86.39%), Postives = 171/191 (89.53%), Query Frame = 3 
Query:    6 SSCCSRSSGRGGCHEGTHARPPLAPSTTTSRTTADARRSGSCGRNGSDGPPSPSSLSRS-----GYHCPWREAFFGAHRARPLDLLRELSSSLPSNVSAQQPPSSQPAPEQQCIVVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWDGEAVMGRKGTLWRFAHQGVST 563
            SSCC  SSGRGG HE T +  PLA STTTSRTT DARRSGSCGRNGS+GPPSPSSLSRS     GYHCPWREAFF AHRARP DLLRELSSSLPSNV+ QQPPS QPAPEQQCI+VLHG VY+LAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWDGEAVMGRKGTLWRFA QG+ST
Sbjct:  168 SSCCPISSGRGGYHEATDSGLPLACSTTTSRTTGDARRSGSCGRNGSNGPPSPSSLSRSCCDRAGYHCPWREAFFRAHRARPRDLLRELSSSLPSNVNIQQPPS-QPAPEQQCIIVLHGNVYELAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWDGEAVMGRKGTLWRFARQGIST 357
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: A0A384BEW7_BALAS (cytochrome b5 type B isoform X3 n=1 Tax=Balaenoptera acutorostrata scammoni TaxID=310752 RepID=A0A384BEW7_BALAS)

HSP 1 Score: 64.3 bits (155), Expect = 2.640e-9
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 3 
Query:  333 VVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWD 500
            +V+HG+VYD+ GFL+ HPGG  +L E A  DATE+FE   HS +AR M +++ + D
Sbjct:   39 LVIHGRVYDVTGFLNEHPGGEEVLLEQAGGDATESFEDVGHSSDAREMLKQYYIGD 94
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: A0A384BEY6_BALAS (cytochrome b5 type B isoform X2 n=5 Tax=Cetacea TaxID=9721 RepID=A0A384BEY6_BALAS)

HSP 1 Score: 64.3 bits (155), Expect = 2.890e-9
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 3 
Query:  333 VVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWD 500
            +V+HG+VYD+ GFL+ HPGG  +L E A  DATE+FE   HS +AR M +++ + D
Sbjct:   39 LVIHGRVYDVTGFLNEHPGGEEVLLEQAGGDATESFEDVGHSSDAREMLKQYYIGD 94
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: UPI00186B2CF0 (cytochrome b5-like n=1 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186B2CF0)

HSP 1 Score: 63.2 bits (152), Expect = 4.680e-9
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 3 
Query:  318 EQQCIVVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVV 494
            E+   +V+HG+VYD+ GFL  HPGG  +L E A  DAT+ FE   HS +AR M  +F +
Sbjct:   33 EKDAWLVIHGRVYDITGFLDEHPGGRKVLMEKAGQDATDGFEAAGHSADAREMLAQFCL 91
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: UPI0020188A5A (cytochrome b5 type B isoform X2 n=1 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI0020188A5A)

HSP 1 Score: 63.9 bits (154), Expect = 5.170e-9
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 3 
Query:  333 VVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWD 500
            +V+HG+VYD+ GFL  HP G  +L E A TDATE+FE   HS +AR M +++ + D
Sbjct:   41 LVIHGRVYDVTGFLDEHPAGEELLLEQAGTDATESFEDIGHSPDAREMLKQYYIGD 96
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: UPI002018E1A1 (cytochrome b5 type B isoform X1 n=1 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI002018E1A1)

HSP 1 Score: 63.9 bits (154), Expect = 8.810e-9
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 3 
Query:  333 VVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWD 500
            +V+HG+VYD+ GFL  HP G  +L E A TDATE+FE   HS +AR M +++ + D
Sbjct:   41 LVIHGRVYDVTGFLDEHPAGEELLLEQAGTDATESFEDIGHSPDAREMLKQYYIGD 96
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: A0A662Y664_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y664_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.260e-8
Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = 3 
Query:  198 WREAFFGAHRARPLDLLRELSSSLPSNVSAQQPPSSQPAPEQQCIVVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWD 500
            WR+ +F  H +RP++L R L  +                 ++QC+ +  G+VYD+ GFL  HPGG  ++ +   TDAT+ +++F HS EA+    +F+V D
Sbjct:  379 WRQFYFQHHLSRPVELARLLGLTA----------------DRQCVAIA-GQVYDITGFLDLHPGGPHVIGDAVGTDATDIWDQFRHSLEAKASMEQFLVAD 462
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: A0A8D2J9T2_VARKO (Cytochrome b5 type B n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2J9T2_VARKO)

HSP 1 Score: 62.8 bits (151), Expect = 1.320e-8
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:  333 VVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVV 494
            +V+HG+VYD+ GFLS HPGG  +L E A  DATE FE   HS++A+ M +++++
Sbjct:   39 LVIHGRVYDVTGFLSEHPGGEEVLLEQAGRDATENFEDVGHSKDAQDMLKQYLI 92
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: UPI001CC5CB7D (cytochrome b5 type B-like n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC5CB7D)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-8
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 3 
Query:  333 VVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWDGEAVMGRKG 527
            +V+HG+VY++ GFL  HPGG  +L E A  DAT++FE   HS +AR M  +F +  GE +   +G
Sbjct:   40 LVIHGRVYNITGFLGEHPGGEQVLLEQAGRDATDSFEAAGHSADAREMLAQFCL--GELLPSERG 102
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BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Match: U5H987_USTV1 (Cytochrome b5 heme-binding domain-containing protein n=4 Tax=Microbotryum TaxID=34416 RepID=U5H987_USTV1)

HSP 1 Score: 61.2 bits (147), Expect = 3.300e-8
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 3 
Query:  333 VVLHGKVYDLAGFLSSHPGGALILQEHASTDATEAFERFFHSREARRMARRFVVWDGEAVMGRK 524
            +++HGKVY +AGFL  HPGG  +L   A  DATEAFE   HS EAR +  ++ V +G A   ++
Sbjct:   23 MLIHGKVYAIAGFLDEHPGGDEVLLGEAGKDATEAFEDVGHSDEARAILDKYFVGNGPASSSKE 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1642.3638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQE7_9PHAE4.720e-10486.39Cytochrome b5 heme-binding domain-containing prote... [more]
A0A384BEW7_BALAS2.640e-950.00cytochrome b5 type B isoform X3 n=1 Tax=Balaenopte... [more]
A0A384BEY6_BALAS2.890e-950.00cytochrome b5 type B isoform X2 n=5 Tax=Cetacea Ta... [more]
UPI00186B2CF04.680e-947.46cytochrome b5-like n=1 Tax=Trichosurus vulpecula T... [more]
UPI0020188A5A5.170e-950.00cytochrome b5 type B isoform X2 n=1 Tax=Perognathu... [more]
UPI002018E1A18.810e-950.00cytochrome b5 type B isoform X1 n=1 Tax=Perognathu... [more]
A0A662Y664_9STRA1.260e-833.66Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A8D2J9T2_VARKO1.320e-850.00Cytochrome b5 type B n=1 Tax=Varanus komodoensis T... [more]
UPI001CC5CB7D1.400e-844.62cytochrome b5 type B-like n=1 Tax=Dromiciops gliro... [more]
U5H987_USTV13.300e-846.88Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1642contigE-siliculosus-1a_F_contig1642:7094..8819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size240
Model size847
Exons2
Ec32 orthologEc-04_003830.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1642.3638.1prot_E-siliculosus-1a_F_contig1642.3638.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1642 7278..8396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928150.6333046-UTR-E-siliculosus-1a_F_contig1642:7093..72771622928150.6333046-UTR-E-siliculosus-1a_F_contig1642:7093..7277Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1642 7094..7277 -
1696318824.8019373-UTR-E-siliculosus-1a_F_contig1642:7093..72771696318824.8019373-UTR-E-siliculosus-1a_F_contig1642:7093..7277Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1642 7094..7277 -
1622928150.7145603-UTR-E-siliculosus-1a_F_contig1642:8396..88191622928150.7145603-UTR-E-siliculosus-1a_F_contig1642:8396..8819Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1642 8397..8819 -
1696318824.8285332-UTR-E-siliculosus-1a_F_contig1642:8396..88191696318824.8285332-UTR-E-siliculosus-1a_F_contig1642:8396..8819Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1642 8397..8819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928150.676409-CDS-E-siliculosus-1a_F_contig1642:7277..74951622928150.676409-CDS-E-siliculosus-1a_F_contig1642:7277..7495Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1642 7278..7495 -
1696318824.8109481-CDS-E-siliculosus-1a_F_contig1642:7277..74951696318824.8109481-CDS-E-siliculosus-1a_F_contig1642:7277..7495Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1642 7278..7495 -
1622928150.6986852-CDS-E-siliculosus-1a_F_contig1642:8374..83961622928150.6986852-CDS-E-siliculosus-1a_F_contig1642:8374..8396Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1642 8375..8396 -
1696318824.8195984-CDS-E-siliculosus-1a_F_contig1642:8374..83961696318824.8195984-CDS-E-siliculosus-1a_F_contig1642:8374..8396Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1642 8375..8396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1642.3638.1

>prot_E-siliculosus-1a_F_contig1642.3638.1 ID=prot_E-siliculosus-1a_F_contig1642.3638.1|Name=mRNA_E-siliculosus-1a_F_contig1642.3638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=80bp
MQRRRLRGFSTPERHEGWQGGSWCGMGRRLWGERAPSGDLHTKAFLHNFL
LPLLFARREIVQQRQEQGEHRCFWSVSVG*
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mRNA from alignment at E-siliculosus-1a_F_contig1642:7094..8819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1642.3638.1 ID=mRNA_E-siliculosus-1a_F_contig1642.3638.1|Name=mRNA_E-siliculosus-1a_F_contig1642.3638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1642:7094..8819- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTACAGCAGTTGTTGCTCACGCAGCAGCGGGAGGGGAGGGTGTCATGAA
GGGACACACGCAAGGCCTCCACTAGCGCCATCAACTACTACTTCTCGAAC
AACTGCAGACGCGAGAAGAAGCGGCAGCTGCGGCAGAAACGGTAGCGACG
GGCCCCCGTCGCCTTCCTCTCTCTCCCGGTCTGGCTACCACTGCCCATGG
CGAGAAGCATTCTTCGGCGCCCATCGCGCCAGACCTCTTGACCTGCTGCG
AGAGCTCTCCTCCTCCCTGCCGTCCAATGTTAGTGCTCAGCAACCACCAT
CATCACAACCGGCACCGGAACAGCAGTGCATCGTTGTCCTGCACGGAAAG
GTCTACGACCTCGCCGGCTTTCTCTCATCCCACCCAGGCGGCGCGCTAAT
CCTTCAGGAACACGCCTCCACGGATGCAACGGAGGCGTTTGAGAGGTGAA
GAGGAGGAGGTGTCATACGTCTCTCTTCATGCTAGATAGTGTATTTGTAC
TAGCATTATATATAAGTATCAGTTACAGCAAGTAATAGATACTGTTGATA
CCAGCGGCACGGCGTGCGTGAAGATGTTACCCACGCATCTTCGTGAACAT
GGCACCCGCTCCTTTAGTGTGCTGTGTTCGGCTTGTAGGCATCCCTGTGT
TTTGAGCTTTTACCTCATGACCATCTCACCACCGCATGGCGGCGTAGGCC
GGCACGCCATGAATCTCATGTGCATGGGGAACTTACACTTCTTGTCGAAA
CGACACCCACCGTCTTTTTTCTATTAATGCTGTACAGTAGTAGCCTGCAA
CAGCTGCCGATCGAGCTGCTCTTCGTGCTTCCGAGGCTAGAGGGGGTGTT
GCCATGTGCGGCACCGAACGACCCCAAAAGCGCTCCCCCGTTTCCCCCGT
TTGAAAAGGCGGGATATCGTCAGGATAGATAGACTATTTAGGGACGACAT
TTTTGAGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGCCATCGGTGAT
CGGTCTTGTGGGAACAGTGCTCCGTCCTCTCGAGGACGCGTGGTCAATGG
TCTAACCGCTAAGGCATGCAACAAAAGAGTACCCCCCCCCCCCCCCCCCC
CCCCCCCCCCGCCCCCCCCCCCCGCCCCTTCCCCCCCCCCCCGCGCCCCC
ACAAGACCCGAGGGGTGTGTGGGGGGGGGGGGGNNNNNNNNNNCGGTGAT
CGGTCTTGGGGGAAAAGGGCTCCGGCCCCCCGAGGACGCGTGGTCAATGG
TCTAACCGCTAAGGCATGCAACAAAAGGGTCCCCCCCCCCCCCCCCCGTT
TCCCCCGTTGGTCGCACGACTCAGGTTTTTCCACTCCCGAGAGGCACGAA
GGATGGCAAGGCGGTTCGTGGTGTGGGATGGGGAGGCGGTTATGGGGAGA
AAGGGCACCCTCTGGAGATTTGCACACCAAGGCGTTTCTACATAATTTCC
TCCTGCCTTTGCTATTCGCGAGAAGGGAAATAGTGCAGCAGCGGCAGGAG
CAGGGGGAACACCGGTGTTTTTGGTCGGTTTCGGTTGGGTAGGTGAATCG
CTCTTGTTTTTGGAGGGGCGGCTGCGCCGGGTAACCCTCTTTTCTCCATG
GACGATGAAGGCGGTCTCACTGCTGTGTGTGATACATTTTCTCGAAAGGG
AAGTCTCTGGTTGTGTGTATATTTCTAACAAGTAGATGCAGCATAGCGGC
GGTGGAGGCGATTAAGGAAATCTACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1642:7094..8819-

>mRNA_E-siliculosus-1a_F_contig1642.3638.1 ID=mRNA_E-siliculosus-1a_F_contig1642.3638.1|Name=mRNA_E-siliculosus-1a_F_contig1642.3638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1642:7094..8819- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAACGGAGGCGTTTGAGAGATGCAACGGAGGCGTTTGAGAGGTTTTT
CCACTCCCGAGAGGCACGAAGGATGGCAAGGCGGTTCGTGGTGTGGGATG
GGGAGGCGGTTATGGGGAGAAAGGGCACCCTCTGGAGATTTGCACACCAA
GGCGTTTCTACATAATTTCCTCCTGCCTTTGCTATTCGCGAGAAGGGAAA
TAGTGCAGCAGCGGCAGGAGCAGGGGGAACACCGGTGTTTTTGGTCGGTT
TCGGTTGGGTAGGTTTTTCCACTCCCGAGAGGCACGAAGGATGGCAAGGC
GGTTCGTGGTGTGGGATGGGGAGGCGGTTATGGGGAGAAAGGGCACCCTC
TGGAGATTTGCACACCAAGGCGTTTCTACATAATTTCCTCCTGCCTTTGC
TATTCGCGAGAAGGGAAATAGTGCAGCAGCGGCAGGAGCAGGGGGAACAC
CGGTGTTTTTGGTCGGTTTCGGTTGGGTAG
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