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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1641.3635.1 vs. uniprot
Match: A0A7S2C742_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C742_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 5.510e-22 Identity = 64/163 (39.26%), Postives = 92/163 (56.44%), Query Frame = 1
Query: 217 APFVHD-PDPRIYRPTVPSNVPSGCRFGVEVPATPSSQILV--RREAEFDGERSRSGSGAGKTNNRLAMMREEAHRHSHLQMLANVEISRRSELGETICGRGKTIRKPLLYPQTVSHQQALTLEKKTGPSPAYDAPPRPHSVVDHRPWNQHMYLPYSRTRADF 696
AP++HD D R YRP V + +FGV PA+ +S+ +V +R + G R + + +++ SH QM AN S++SE+GET+ G G+TI KP+LYPQ ++HQ AL LEKK P +D P P + W+Q +LPYSRTR+ F
Sbjct: 30 APYIHDHSDSRCYRPEVTVDKR---QFGVTQPASVTSRTMVDVKRGTQEHGWRQKLEANTAESS------------RSHRQMRANFRDSQKSEVGETLHGNGRTIDKPILYPQGLNHQMALALEKKAEPGLPFDKRP-PTANEPFEKWSQEQHLPYSRTRSHF 176
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 717 |
| Model size | 717 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog | Ec-07_007170.1 |
| Ec32 ortholog description | Hypothetical protein |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1641.3635.1 >prot_E-siliculosus-1a_F_contig1641.3635.1 ID=prot_E-siliculosus-1a_F_contig1641.3635.1|Name=mRNA_E-siliculosus-1a_F_contig1641.3635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=239bp
MHLQDRPTSGRRLNQHHKRPAPSYHWEGFGRKNTKPPWFDCRLFDKDRRD
VGWVVKDFGAPSLADKPRREGAAPFVHDPDPRIYRPTVPSNVPSGCRFGV
EVPATPSSQILVRREAEFDGERSRSGSGAGKTNNRLAMMREEAHRHSHLQ
MLANVEISRRSELGETICGRGKTIRKPLLYPQTVSHQQALTLEKKTGPSP
AYDAPPRPHSVVDHRPWNQHMYLPYSRTRADFPDRSKS* back to topmRNA from alignment at E-siliculosus-1a_F_contig1641:6860..9388+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1641.3635.1 ID=mRNA_E-siliculosus-1a_F_contig1641.3635.1|Name=mRNA_E-siliculosus-1a_F_contig1641.3635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2529bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1641:6860..9388+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATCTGCAAGACCGCCCTACAAGTGGCCGCCGCCTCAACCAGCACCA
CAAGAGACCCGCCCCGTCGTATCACTGGGAAGGATTCGGCAGGAAGAACA
CCAAACCACCGTGGTTCGACTGCCGGTTGTTCGACAAGGATAGGCGAGAT
GTAGGATGGGTAGTGAAGGACTTCGGAGCACCTTCCTTGGCGGACAAGGT
AAACCGGGACTGGGTTATTGTTCACGCAGGATTTCCAGTCCAGGCGATAC
ATGGCAAGTGCAGCAGGACGACGACGTGTTAGACATGCGGATCGTTGCAG
ACAAAATGAGAAAAACGATCAGGAACATGGGAGACAATTGTAGATAACAT
AACTGCGAAGATGGTGTTGTCCACGTATGCAAACGAAAATCTCGCGAGGG
ATTCAAGTTTCAATGACTCCGGGGCTCATCCGTCTTCTTTCGTCTGTACA
CACGAATCTACCAACAACGAACCCCGTTGGTCTGTAGGTTATTGTCGTCT
TCTTGTACAACCCCCGAGCCCTTCGCTTCTCTAGGTCAAATAAAGAAAAA
GGGCGGATTCTTCGAACTTTGCGGCTGATGGCAAGCAGATTCTGCATTTA
GATGATCCTGCAGATCATACCCTTGAGTGCAGTACCGCGCATCATCAGAG
GTCCACAGAAATTTCATCACTCGCAACCGCCCTCTCCAGTGTACCGCTCG
ACCATCGGGAGCGAGACAACTCGTGAAATTGAGGCGCTTGTTGAGAAGCA
CGATGACCACTACACGACCACTACACCACTAAGTGGTGTAGTGGTCATCG
TGCTTCTCAACAGCGCTCACTGCCATGTGCTCACCAAAGGTACCATACCG
TTCCTGTCCTTCTGTTGGTTCTGCGTCTTTCGTGTGCCTTGATGCGCCAT
ACCTATCTGTGGAACCACAGCCTAGAAGAGAAGGAGCCGCGCCCTTCGTC
CATGACCCAGACCCACGAATCTACCGGCCCACGGTACCCTCCAACGTTCC
GAGCGGCTGTCGCTTCGGGGTCGAAGTTCCGGCTACCCCATCTAGTCAAA
TTCTGGTCCGCAGGGAGGCGGAGTTCGACGGTGAAAGAAGTAGAAGCGGG
AGCGGCGCCGGCAAGACGAACAACAGACTGGCAATGATGCGCGAGGAGGC
GCACAGGCATTCCCACCTGCAGATGCTCGCCAACGTGGAAATTTCCCGGC
GATCAGGTGCAACGGCGTGTCTGTTGTTTAGTTTGAAACGAGACAGAAAT
AGCAACCACCTTTACCGGAAAATGTTTATGAGTTTGTCGGTTTTTTCAAC
AACGTGGATATGACTCTTTCTCTCCATGCCCCTCCCATGTGTTTTCGGTG
CTGTTGTGCGGCCCAATCGTTCGCATGCCAACACCACACGCGTTCAAAAC
TAGAGTCCTCGAGCCTTTACCGAGGGGCGTCATCTGACTGTGTCACTATA
TATTAGTTCAAGTTATTTAACGATTTCATTAGGAGAGTTGCGTTTGGGTG
GCATGATCAGATGTGGGTGCTAAATGAAACGTATTCAAGTAAGCAATATG
GACTCGGCCGTACTCGGGATATTGGAGGATAGGAACTACCAAAGGGATGG
TGAGTGTTCCCTGCACTCTTCGCCATCCTCCGTGTACAACAGAACCAGCC
CGACTAGACGTACCACAGAAATACCGCAGATACTCCGAGAGGACCCCAAA
CATAGCTCCACCACTTCGAAGGTTATCACGAATATCGCTGGTTGATTGTC
CTCTTTCTCTTCTTGCCGTCGGCGAGGAAAGAGCTTGGCGAGACTATTTG
CGGGCGAGGGAAGACGATCCGGAAGCCGCTCCTCTACCCTCAGGTTAGTA
GGTGTACGACGGGTGTGCGTGAAAGAAGAAAAGCGTGGCGGTTGTCTATA
TTTTCGTATTCCATCTCGTGCAATGAGTGTATTTGAGTTGATTCTCGGAC
ATTTGTCGTTTCTTTGGCCCTGGGGCGGACGCACCCCCTCTCTTCCCCCA
TCTCCTCTCTTCTTCCAATACTCTATCTTCATTGCACAACTTCTTCCCAC
TGTATTCTCGAACTTCTACCGTAACATTTTGCCCACAAGCCAGCCGCAAG
CACCGCTCGTCTGGCACCACGATGTATACGGGTGGTCACAACGATGAATT
CCCTTACAATATGATCCTGCCCACATGGCGTGTGTAGTGTTCCGAGTGCA
CGGCTTCTGATTCCTTGAGAAGACGATAGGCGGCGACCATGCAGGCCTGC
GAGTTTTCCAAAGCAAGGGTACCAAAAGACGTGCCCCCACCAGCGAGTCA
CGGCGGCGTTCAGCTGAGCGACATCCCTCACTCACTCTCTGCTTCATCCG
CGCATCAGACTGTTTCACATCAACAGGCTCTGACGCTAGAGAAAAAGACA
GGGCCAAGTCCGGCTTACGACGCGCCGCCGCGGCCCCATTCGGTGGTCGA
CCACCGCCCATGGAACCAGCACATGTACCTCCCGTACTCGAGAACAAGAG
CTGACTTCCCAGACCGATCGAAGTCGTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1641:6860..9388+ >mRNA_E-siliculosus-1a_F_contig1641.3635.1 ID=mRNA_E-siliculosus-1a_F_contig1641.3635.1|Name=mRNA_E-siliculosus-1a_F_contig1641.3635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1434bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1641:6860..9388+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATCTGCAAGACCGCCCTACAAGTGGCCGCCGCCTCAACCAGCACCA
CAAGAGACCCGCCCCGTCGTATCACTGGGAAGGATTCGGCAGGAAGAACA
CCAAACCACCGTGGTTCGACTGCCGGTTGTTCGACAAGGATAGGCGAGAT
GTAGGATGGGTAGTGAAGGACTTCGGAGCACCTTCCTTGGCGGACAAGAT
GCATCTGCAAGACCGCCCTACAAGTGGCCGCCGCCTCAACCAGCACCACA
AGAGACCCGCCCCGTCGTATCACTGGGAAGGATTCGGCAGGAAGAACACC
AAACCACCGTGGTTCGACTGCCGGTTGTTCGACAAGGATAGGCGAGATGT
AGGATGGGTAGTGAAGGACTTCGGAGCACCTTCCTTGGCGGACAAGCCTA
GAAGAGAAGGAGCCGCGCCCTTCGTCCATGACCCAGACCCACGAATCTAC
CGGCCCACGGTACCCTCCAACGTTCCGAGCGGCTGTCGCTTCGGGGTCGA
AGTTCCGGCTACCCCATCTAGTCAAATTCTGGTCCGCAGGGAGGCGGAGT
TCGACGGTGAAAGAAGTAGAAGCGGGAGCGGCGCCGGCAAGACGAACAAC
AGACTGGCAATGATGCGCGAGGAGGCGCACAGGCATTCCCACCTGCAGAT
GCTCGCCAACGTGGAAATTTCCCGGCGATCAGCCTAGAAGAGAAGGAGCC
GCGCCCTTCGTCCATGACCCAGACCCACGAATCTACCGGCCCACGGTACC
CTCCAACGTTCCGAGCGGCTGTCGCTTCGGGGTCGAAGTTCCGGCTACCC
CATCTAGTCAAATTCTGGTCCGCAGGGAGGCGGAGTTCGACGGTGAAAGA
AGTAGAAGCGGGAGCGGCGCCGGCAAGACGAACAACAGACTGGCAATGAT
GCGCGAGGAGGCGCACAGGCATTCCCACCTGCAGATGCTCGCCAACGTGG
AAATTTCCCGGCGATCAGAGCTTGGCGAGACTATTTGCGGGCGAGGGAAG
ACGATCCGGAAGCCGCTCCTCTACCCTCAGAGCTTGGCGAGACTATTTGC
GGGCGAGGGAAGACGATCCGGAAGCCGCTCCTCTACCCTCAGACTGTTTC
ACATCAACAGGCTCTGACGCTAGAGAAAAAGACAGGGCCAAGTCCGGCTT
ACGACGCGCCGCCGCGGCCCCATTCGGTGGTCGACCACCGCCCATGGAAC
CAGCACATGTACCTCCCGTACTCGAGAACAAGAGCTGACTTCCCAGACCG
ATCGAAGTCGTAGACTGTTTCACATCAACAGGCTCTGACGCTAGAGAAAA
AGACAGGGCCAAGTCCGGCTTACGACGCGCCGCCGCGGCCCCATTCGGTG
GTCGACCACCGCCCATGGAACCAGCACATGTACCTCCCGTACTCGAGAAC
AAGAGCTGACTTCCCAGACCGATCGAAGTCGTAG back to top
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