mRNA_E-siliculosus-1a_F_contig164.3629.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig164.3629.1
Unique NamemRNA_E-siliculosus-1a_F_contig164.3629.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: D8LRI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI6_ECTSI)

HSP 1 Score: 651 bits (1680), Expect = 1.370e-234
Identity = 350/376 (93.09%), Postives = 353/376 (93.88%), Query Frame = 1
Query:    1 MTATGNREVHNLLSIMVVLLPATWSLLMPPACFPSRFWVPRHGQVAPKMRCQGECGTTPAATAAANASRQASWGVGVSSWVAGATSFSRSALHAST-EGVGARWNGSSSAGGXXXXXXXXXGTDXXXXXXXXMGEGDDGEGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGR--PFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTEG 1119
            MTATGNREVHNLLSIMVVLLPATWSLLMPP CFPSRFWVPRH QVAPKMRCQGECGTT AATAAANASRQASWGVGVSSWVAGATSFSRSA+HAST EGVGA WNGS     XXXXXXXXXGTD XXXXX  MGEGDD +GASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLV KAVTSGVLGLSGDMAAQFFEFQQKAESGR  PFLKN RRLTAVAIDSILITGPALHALYGLLECLIPT  GGFVPAALHV IDTFVFDPMFVASFFCVTGMLESR LR+SILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVP EG
Sbjct:    1 MTATGNREVHNLLSIMVVLLPATWSLLMPPTCFPSRFWVPRHAQVAPKMRCQGECGTTRAATAAANASRQASWGVGVSSWVAGATSFSRSAIHASTPEGVGAWWNGSXXXXXXXXXXXXXXGTDGXXXXXGAMGEGDDAKGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNNRRLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPAEG 376          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A6H5JK43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK43_9PHAE)

HSP 1 Score: 618 bits (1594), Expect = 2.310e-221
Identity = 335/376 (89.10%), Postives = 343/376 (91.22%), Query Frame = 1
Query:    1 MTATGNREVHNLLSIMVVLLPATWSLLMPPACFPSRFWVPRHGQVAPKMRCQGECGTTPAATAAANASRQASWGVGVSSWVAGATSFSRSALHAST-EGVGARWNGSSSAGGXXXXXXXXXGTDXXXXXXXXMGEGDDGEGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGR--PFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTEG 1119
            MTA GNREVHN+LSI+VVLLPA WSLLMP A FPSRFWVPRH QVAPKMRC G+CGTTPA    ANASR+ASWGVGVSSWVA AT FSRSALHAST EG+GA WNG      XXXXXXXX GTD XXXXXX MGEGDDG+ ASDMNACSTQHRDRGE AS TV+MSGG  KKSA FGPWVWLSAMWGMYAAWLRRSPLV KAVTSGVLGLSGDMAAQFFEFQQKAESGR  PFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHV IDTFVFDPMFVASFFCVTGMLESRSLR+SILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTEG
Sbjct:    1 MTARGNREVHNILSIIVVLLPAAWSLLMPRASFPSRFWVPRHPQVAPKMRCHGQCGTTPATAPVANASREASWGVGVSSWVAEATYFSRSALHASTPEGIGAWWNGXXXXXXXXXXXXXXNGTDGXXXXXXAMGEGDDGKRASDMNACSTQHRDRGEGASPTVEMSGGASKKSARFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRSLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTEG 376          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A7S3XMM5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMM5_HETAK)

HSP 1 Score: 181 bits (459), Expect = 5.630e-52
Identity = 90/185 (48.65%), Postives = 126/185 (68.11%), Query Frame = 1
Query:  559 MYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFE-FQQKAESG---RPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 1101
            +Y++ L+ +P++ KA+++  +  SGD A Q +E +++ +  G     F+ + RR  AV +D I ITGP LH  Y LLE L+PT  GG +PA LHVA DTF+ DP+FV +FF  TG+ E R L    LP LRREF  A++GSW VS +  P+QFA+FRY+P+ +RVL VN  D+AWT+ MS+FSHK
Sbjct:   23 LYSSMLKNAPMLTKALSAAGIAASGDFATQIWEHWRETSNQGILVDKFILDRRRQLAVMMDGIFITGPILHLAYELLEHLVPTEGGGALPAVLHVAADTFLLDPLFVCTFFLTTGLFERRPLWADTLPRLRREFPAALRGSWSVSAVCLPVQFASFRYVPVRYRVLLVNCIDLAWTATMSFFSHK 207          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: W7TTT3_9STRA (Mpv17/PMP22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT3_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.380e-51
Identity = 89/191 (46.60%), Postives = 125/191 (65.45%), Query Frame = 1
Query:  547 AMWGMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQ------QKAESGRPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 1101
            ++WG YA  L   P++ KA+T+G++ L GD+ AQ FE++       K E   PF  N  R  AV I+ ++ITGP LH LY  LE  +P A  GF+ A  HVA+D F+FDP+FV  FF + G++E + L   I P ++RE+W A++G W VS++F PL+FATFR LPL  RVL VN  D+ WT+V+S+F H+
Sbjct:  154 SLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMP-AQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHR 343          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A836CPL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL7_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.710e-50
Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:  742 TGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 1101
            TGP LH LYGLLE  IPT AGG +PAALHV +DTF+FDP+FV +FF  T + E +S++  ++P L RE+WPAV GSW VS+LF PLQ+A FRYLPL+ RVLS+N CD+AWT+V+S+FSHK
Sbjct:    1 TGPGLHYLYGLLESHIPTTAGGLIPAALHVLLDTFLFDPVFVGTFFLTTALFEGKSMKREVVPQLEREYWPAVVGSWGVSVLFWPLQWACFRYLPLQLRVLSINVCDVAWTAVLSFFSHK 120          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A836CK90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK90_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.210e-49
Identity = 78/126 (61.90%), Postives = 97/126 (76.98%), Query Frame = 1
Query:  724 IDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 1101
            ID + ITGP LH LYGLLE  IPT AGG +PAA HV +DTF+FDP+FV SFF  T + E RSLR  + P L RE+WPA++GSW VS+LF P+Q+A FRYLPL+ RV S+N CD+AWT+ +SY SH+
Sbjct:    2 IDGVCITGPGLHFLYGLLESHIPTTAGGALPAAAHVLLDTFLFDPVFVCSFFFTTALFEGRSLRRDVAPRLAREYWPALRGSWGVSVLFWPVQWAAFRYLPLQLRVASINLCDVAWTAALSYASHR 127          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A6U1B1H0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1B1H0_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.640e-35
Identity = 73/181 (40.33%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  556 GMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGRPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSH 1098
            G Y A L  +P+  KAV++G +   GDM AQ  E ++   +G PF  +  R  A  +D +L+TGP+LH  Y LLE +IP+  G      + + +D  +FDP+ +A+FFC T ++E    R+ ++  LR ++W    G + VS    P+QF +FRY+P++ RVL VN CD+AWTSV+S  SH
Sbjct:   69 GWYLALLSSAPIRTKAVSTGCIECLGDMIAQTAEARR---TGLPF--DRVRSFACFVDGLLVTGPSLHYGYALLERVIPSVGGPVWATLIQITVDELIFDPIDIATFFCTTSLIE----RKDLVQRLRNDYWSTFWGGFGVSFACTPIQFISFRYMPVKTRVLVVNLCDLAWTSVVSVLSH 240          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A7S2M641_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M641_9STRA)

HSP 1 Score: 133 bits (334), Expect = 9.240e-33
Identity = 75/205 (36.59%), Postives = 108/205 (52.68%), Query Frame = 1
Query:  544 SAMWGMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGRPF---------------LKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGF-----VPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSH 1098
            SA +  Y + L  +PL+ K VT G++   GD  AQFFE++ K      +                 N RR  A  ++ +LI+ P +H  Y L E ++PT  GG      + A  HV  D  + D +FV +    TG+LE    R+ ++P LRR + P ++ S +   L  PLQF +FR+LPL  RVLSVNA D+ WT V+S+ SH
Sbjct:   72 SAFFAWYLSALDATPLLTKCVTGGLIAFVGDYGAQFFEWKSKQAPKESYNGSTTKQRSTISIHGTYNIRRGIARFLECLLISSPLMHYGYDLFETVVPTVGGGSALYRSIAALTHVLADCVLLDAIFVMTGIVFTGLLEGHRFRQQVIPNLRRVYLPTLKASVMTCGLLAPLQFLSFRFLPLSLRVLSVNAVDLIWTGVISFVSH 276          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: B8C2N5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2N5_THAPS)

HSP 1 Score: 117 bits (292), Expect = 1.130e-25
Identity = 70/223 (31.39%), Postives = 110/223 (49.33%), Query Frame = 1
Query:  562 YAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQ----QKAESGRPFLKNT----------------------------------RRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAAL----HVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKA 1104
            Y   L  +PL+ K VT G++   GD  AQ+FE++    +K +SG      +                                  RR  A  ++ +LI+ P +H  Y L E ++P   G  + +++    HV  D+   D +FV +    TG+LE  SLR+ ++P L+  + P ++ S + S    PLQF +FR+LP++ RVLSVNA D+ WT V+S+ SH A
Sbjct:  185 YLTQLEAAPLLTKCVTGGLIAYCGDYGAQWFEYKSSRSKKQKSGGGIASESTAASELVTNSPRAGGPTGKRAEPSSLSIHGTYDFRRGVARFLECLLISSPLMHYGYDLFERIVPVVGGTGISSSIAALSHVLADSVFLDGIFVGTGIVATGILEGNSLRKHVIPNLKNVYVPTLKASVMTSSALMPLQFLSFRFLPVQLRVLSVNAVDLIWTGVISFVSHSA 407          
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: D8LMD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD9_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 8.490e-25
Identity = 66/181 (36.46%), Postives = 98/181 (54.14%), Query Frame = 1
Query:  565 AAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGRPFLKNTR---RLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSH 1098
            A+ L   P++ K+++SG +GL GD+ AQ+ E+   A    P  K T    R  AV ID +LI GP LH  Y +LE  +P A    + A   V +D  V DP+F   F   TG++E RS+R  ILP +   +   V    ++ + + P+Q   F   P+++RVL+ +  D+ WT V S FSH
Sbjct:    7 ASALDAYPVLTKSISSGFIGLLGDVLAQWVEYLFGAAF--PPWKTTAMVWRSCAVMIDGLLINGPLLHYAYEMLESRMP-AGDSILAAMTQVCVDVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWAPIQIYLFNRYPVQYRVLTADLIDLVWTCVSSLFSH 184          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI6_ECTSI1.370e-23493.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK43_9PHAE2.310e-22189.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XMM5_HETAK5.630e-5248.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TTT3_9STRA1.380e-5146.60Mpv17/PMP22 n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A836CPL7_9STRA2.710e-5064.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK90_9STRA2.210e-4961.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1B1H0_9STRA2.640e-3540.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2M641_9STRA9.240e-3336.59Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8C2N5_THAPS1.130e-2531.39Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
D8LMD9_ECTSI8.490e-2536.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig164contigE-siliculosus-1a_F_contig164:2007..5159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1119
Model size1119
Exons4
Ec32 orthologEc-18_004680.1
Ec32 ortholog descriptionMpv17/PMP22
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsKOG1944@1,KOG1944@2759
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
KEGG Pathwayko04146,map04146
KEGG koko:K13348
Seed eggNOG ortholog2880.D8LRI6
Seed ortholog evalue9e-185
Seed ortholog score652.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig164.3629.1prot_E-siliculosus-1a_F_contig164.3629.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig164 2007..5159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928146.2788107-CDS-E-siliculosus-1a_F_contig164:2006..21841622928146.2788107-CDS-E-siliculosus-1a_F_contig164:2006..2184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig164 2007..2184 -
1696318823.082078-CDS-E-siliculosus-1a_F_contig164:2006..21841696318823.082078-CDS-E-siliculosus-1a_F_contig164:2006..2184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig164 2007..2184 -
1622928146.290713-CDS-E-siliculosus-1a_F_contig164:2628..28731622928146.290713-CDS-E-siliculosus-1a_F_contig164:2628..2873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig164 2629..2873 -
1696318823.0936599-CDS-E-siliculosus-1a_F_contig164:2628..28731696318823.0936599-CDS-E-siliculosus-1a_F_contig164:2628..2873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig164 2629..2873 -
1622928146.3061244-CDS-E-siliculosus-1a_F_contig164:3906..44801622928146.3061244-CDS-E-siliculosus-1a_F_contig164:3906..4480Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig164 3907..4480 -
1696318823.1106424-CDS-E-siliculosus-1a_F_contig164:3906..44801696318823.1106424-CDS-E-siliculosus-1a_F_contig164:3906..4480Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig164 3907..4480 -
1622928146.3246088-CDS-E-siliculosus-1a_F_contig164:5037..51591622928146.3246088-CDS-E-siliculosus-1a_F_contig164:5037..5159Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig164 5038..5159 -
1696318823.1245186-CDS-E-siliculosus-1a_F_contig164:5037..51591696318823.1245186-CDS-E-siliculosus-1a_F_contig164:5037..5159Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig164 5038..5159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig164.3629.1

>prot_E-siliculosus-1a_F_contig164.3629.1 ID=prot_E-siliculosus-1a_F_contig164.3629.1|Name=mRNA_E-siliculosus-1a_F_contig164.3629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=373bp
MTATGNREVHNLLSIMVVLLPATWSLLMPPACFPSRFWVPRHGQVAPKMR
CQGECGTTPAATAAANASRQASWGVGVSSWVAGATSFSRSALHASTEGVG
ARWNGSSSAGGGADGGGGNNGTDGGASAGGAMGEGDDGEGASDMNACSTQ
HRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVVK
AVTSGVLGLSGDMAAQFFEFQQKAESGRPFLKNTRRLTAVAIDSILITGP
ALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLE
SRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSV
NACDIAWTSVMSYFSHKAVPTEG
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mRNA from alignment at E-siliculosus-1a_F_contig164:2007..5159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig164.3629.1 ID=mRNA_E-siliculosus-1a_F_contig164.3629.1|Name=mRNA_E-siliculosus-1a_F_contig164.3629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3153bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig164:2007..5159- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGGCGACAGGAAACAGGGAGGTCCACAACCTCTTGTCTATCATGGT GGTGCTCTTGCCTGCGACGTGGAGCCTCCTCATGCCACCGGCATGTTTTC CGAGCCGGTTTTGGGTTCCGAGGTGAGGAAGTCGGGTTGGTTATCAGTCA TCAACAATCAAAATCTTCGCGAGCTGACTTGACTTTTGCTGCCTATCGAC TTTTTTCGTCTTTTCGTATCCTGGCACGAAGCAACGGCCACTGCACCACA GCAGAGTAGTAGCGCGTGGGGTCTACTGCATGTCGGGCAGTTTCTCCAAA ACCGAACACGAATCAAAGCACGCTGATGCTTTCCACGAAGGGCAAACTCG GTGTCAATCAACTCCTCAGAGACCGTACACTTCGAAGTGCTACTTGCAGG CGTTGTCACTGCTGCGTGGTAGCATTCTCACCCGAACTTCTGCTCCATGC TTTGTTGGTATCACTTTCCGCTCTCTGTAATCCCTGAATTATGTTTCGAT TTTCATGGCGTCATCAGGGCGTGCATCCTTCGGGGCAACCCAGGCACTGG CCTGTGTCCCTGCGGCTGGGCAGATGGAACTCGTTAGATTTGGTGATACA GCAGTACCACTAAAAAGAGTTACAGTGCCAACAACACTCGACCCTGCCGT TTGATTTGACCTTCCCTTCGTGCGTAAAGACATGGGCAAGTAGCCCCCAA GATGCGATGCCAGGGGGAGTGCGGCACCACTCCTGCTGCTACTGCTGCTG CCAATGCTAGTCGCCAAGCCTCGTGGGGGGTAGGTGTGTCATCGTGGGTT GCCGGAGCAACTTCTTTTTCCCGATCGGCGTTACATGCATCCACGGAAGG GGTAGGGGCTCGGTGGAATGGCAGCAGCTCAGCAGGCGGGGGCGCCGACG GGGGCGGCGGCAACAACGGCACCGACGGGGGCGCTTCTGCAGGGGGGGCA ATGGGGGAAGGAGACGACGGCGAGGGGGCCTCGGATATGAACGCGTGCAG CACTCAGCATCGAGATAGGGGTGAACGGGCGTCCTCAACGGTTGACATGA GTGGTGGGGAGCCGAAGAAGAGCGCAAGTTTCGGGCCATGGGTGTGGCTG TCGGCGATGTGGGGCATGTACGCGGCGTGGCTGAGGCGATCGCCGTTGGT GGTGAAGGCGGTGACGTCGGGGGTGTTAGGTCTCAGCGGGGATATGGCGG CACAGTTCTTCGAGTTCCAGCAGAAGGCTGAAAGTGGACGCCCGTTCTTG AAGGTGAATGAGTGGCGCTCAGTTGTAATTTCGACGTGACCGTTGACCTG TTGCCTAGCGCGTTTCAGGTCACTAGACGGATACAGTTTTCTTGCCGCGA GCATGGCAGATAGTCTTTGCAAGTTGAAGCCAGTCCTCGCGTAATGGCTA GGAATGAAATTCACGGTGCACATTGCTCCACGCACTCGAACCTGTCCCCA CGACCGGAGGGAAAAGGGCATACTCATCGCATCGCTCAAACACTGCTGTT AAGCCTCAAGAGTACCCCGCTACCGACCAAAAAAGAAGAGCATGCATAGC AACCCCACCCAAAAAGACATACTTTTTTCATGACTCGGTGGCCGAATATA TTATGAATTAAAACGAGGGAACGAAACTCTGGCTCCAGGTGGAGAGTTGA ATATAGACCATATGTTGGGCTACCTAACACAGACACACAGTTTTGACCCG AAAAATATGTAATCTCGAGAGGCCTATGGTGTGTGTTGTTGTAGGCTGTA ACAGCACCACGATGCACAGCTTTTGGTCACCAACCAACATTGACGTTGGA CCGCGCCTGATTCCGCAACGCAACACTGACCCCCCGTTGCAAAACGTCAC GTGTACTGTACGCGAGGCCAGCCTGCCGTCTATATGTCTGCCGTCCACAT TGGCCTCTCCTGGATGCTACTGCACGCTCAGATCCATGCCATCATGGCAG CAGGATACTCGCCGCCTACATCGGCACCTCTGCTTTGGGTATTGACGCAG GAATCCCATGTTGTTGGGTACTTGTAGAGGGCAGTTCTCTGAAGCTGACC GTGGTTGTGCGTTGGGTCTCTTGATGCGCATGAAGCGCACCCTAGCAACG TCATATGCATTTTCCACACCGCTCGTAAGACCTCCCTGCACTTCACATTC CGTGCGACTAGGGGGGAGTTGAGCAGAAGCTTCGTCTGGCACAACTCGTC CCAACATACAGACCCACCTCCCAGTACCCACGAAGGCAAGGCGCCAATTC CTGCCTCCCCTTGCTGCTTCGCTCGCCATTCCTCAGAACACCCGCCGGTT AACCGCCGTGGCGATCGATAGCATACTCATCACTGGCCCGGCGCTTCACG CGCTTTACGGGTTGTTGGAATGCCTCATTCCGACGGCGGCCGGAGGCTTC GTCCCCGCCGCGTTGCATGTAGCAATCGACACCTTCGTCTTCGACCCGAT GTTTGTGGCGTCGTTTTTCTGCGTTACGGGAATGCTTGAGAGCCGATCTC TCAGGGAAAGTATCCTGCCGGCCTTGCGGAGGTGAGACAACGGAGTGTGT GCTTGCCGACGTGTACGGGCGAAGGCGCCTTTTCTTTCGTGGGTTTCGCT TTCGTCGTCTACAAGTAGCGCTATGTCGCGTGTTTTTTCGGTGCTCGAGT CTGGTCGCTTTGAACACCTTCCATGCCGTTATGCTGTTCCAGGTAGAAGG CAGCAGGCTTATTTCACCACTACGTTTGGCGCTTCAACGTTAGCGTATGA CAGACCTGGATCCGTAGCGTATGGGCTTTGGGTGTCCAGTGAGAGGATTT GAGTGTGAACCGTGCTCTGTACGTGGCACTCTTGTGTGGAACGCGCGGCG TATTCTTCAGCAACGCTTGAAACCCCTGAATCGAAAATACCTCGATGAGT GTCGTCTCGACACTCATTGCAGATCCCCCGACCGCCACCGATGCACCAAC GCGTCCGTTCGATCGCATAACACAGAGAGTTCTGGCCAGCGGTGCAAGGA TCATGGCTGGTGTCCTTGTTGTTCTGCCCTCTCCAGTTCGCCACTTTCCG GTACCTTCCCCTAGAATTCCGGGTACTGTCAGTGAACGCGTGCGACATCG CTTGGACGTCCGTCATGAGCTACTTCAGCCACAAGGCGGTCCCTACGGAG GGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig164:2007..5159-

>mRNA_E-siliculosus-1a_F_contig164.3629.1 ID=mRNA_E-siliculosus-1a_F_contig164.3629.1|Name=mRNA_E-siliculosus-1a_F_contig164.3629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2238bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig164:2007..5159- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGGCGACAGGAAACAGGGAGGTCCACAACCTCTTGTCTATCATGGT
GGTGCTCTTGCCTGCGACGTGGAGCCTCCTCATGCCACCGGCATGTTTTC
CGAGCCGGTTTTGGGTTCCGAGATGACGGCGACAGGAAACAGGGAGGTCC
ACAACCTCTTGTCTATCATGGTGGTGCTCTTGCCTGCGACGTGGAGCCTC
CTCATGCCACCGGCATGTTTTCCGAGCCGGTTTTGGGTTCCGAGACATGG
GCAAGTAGCCCCCAAGATGCGATGCCAGGGGGAGTGCGGCACCACTCCTG
CTGCTACTGCTGCTGCCAATGCTAGTCGCCAAGCCTCGTGGGGGGTAGGT
GTGTCATCGTGGGTTGCCGGAGCAACTTCTTTTTCCCGATCGGCGTTACA
TGCATCCACGGAAGGGGTAGGGGCTCGGTGGAATGGCAGCAGCTCAGCAG
GCGGGGGCGCCGACGGGGGCGGCGGCAACAACGGCACCGACGGGGGCGCT
TCTGCAGGGGGGGCAATGGGGGAAGGAGACGACGGCGAGGGGGCCTCGGA
TATGAACGCGTGCAGCACTCAGCATCGAGATAGGGGTGAACGGGCGTCCT
CAACGGTTGACATGAGTGGTGGGGAGCCGAAGAAGAGCGCAAGTTTCGGG
CCATGGGTGTGGCTGTCGGCGATGTGGGGCATGTACGCGGCGTGGCTGAG
GCGATCGCCGTTGGTGGTGAAGGCGGTGACGTCGGGGGTGTTAGGTCTCA
GCGGGGATATGGCGGCACAGTTCTTCGAGTTCCAGCAGAAGGCTGAAAGT
GGACGCCCGTTCTTGAAGACATGGGCAAGTAGCCCCCAAGATGCGATGCC
AGGGGGAGTGCGGCACCACTCCTGCTGCTACTGCTGCTGCCAATGCTAGT
CGCCAAGCCTCGTGGGGGGTAGGTGTGTCATCGTGGGTTGCCGGAGCAAC
TTCTTTTTCCCGATCGGCGTTACATGCATCCACGGAAGGGGTAGGGGCTC
GGTGGAATGGCAGCAGCTCAGCAGGCGGGGGCGCCGACGGGGGCGGCGGC
AACAACGGCACCGACGGGGGCGCTTCTGCAGGGGGGGCAATGGGGGAAGG
AGACGACGGCGAGGGGGCCTCGGATATGAACGCGTGCAGCACTCAGCATC
GAGATAGGGGTGAACGGGCGTCCTCAACGGTTGACATGAGTGGTGGGGAG
CCGAAGAAGAGCGCAAGTTTCGGGCCATGGGTGTGGCTGTCGGCGATGTG
GGGCATGTACGCGGCGTGGCTGAGGCGATCGCCGTTGGTGGTGAAGGCGG
TGACGTCGGGGGTGTTAGGTCTCAGCGGGGATATGGCGGCACAGTTCTTC
GAGTTCCAGCAGAAGGCTGAAAGTGGACGCCCGTTCTTGAAGAACACCCG
CCGGTTAACCGCCGTGGCGATCGATAGCATACTCATCACTGGCCCGGCGC
TTCACGCGCTTTACGGGTTGTTGGAATGCCTCATTCCGACGGCGGCCGGA
GGCTTCGTCCCCGCCGCGTTGCATGTAGCAATCGACACCTTCGTCTTCGA
CCCGATGTTTGTGGCGTCGTTTTTCTGCGTTACGGGAATGCTTGAGAGCC
GATCTCTCAGGGAAAGTATCCTGCCGGCCTTGCGGAGAACACCCGCCGGT
TAACCGCCGTGGCGATCGATAGCATACTCATCACTGGCCCGGCGCTTCAC
GCGCTTTACGGGTTGTTGGAATGCCTCATTCCGACGGCGGCCGGAGGCTT
CGTCCCCGCCGCGTTGCATGTAGCAATCGACACCTTCGTCTTCGACCCGA
TGTTTGTGGCGTCGTTTTTCTGCGTTACGGGAATGCTTGAGAGCCGATCT
CTCAGGGAAAGTATCCTGCCGGCCTTGCGGAGAGAGTTCTGGCCAGCGGT
GCAAGGATCATGGCTGGTGTCCTTGTTGTTCTGCCCTCTCCAGTTCGCCA
CTTTCCGGTACCTTCCCCTAGAATTCCGGGTACTGTCAGTGAACGCGTGC
GACATCGCTTGGACGTCCGTCATGAGCTACTTCAGCCACAAGGCGGTCCC
TACGGAGGGAAGAGTTCTGGCCAGCGGTGCAAGGATCATGGCTGGTGTCC
TTGTTGTTCTGCCCTCTCCAGTTCGCCACTTTCCGGTACCTTCCCCTAGA
ATTCCGGGTACTGTCAGTGAACGCGTGCGACATCGCTTGGACGTCCGTCA
TGAGCTACTTCAGCCACAAGGCGGTCCCTACGGAGGGA
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