mRNA_E-siliculosus-1a_F_contig164.3629.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: D8LRI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI6_ECTSI) HSP 1 Score: 651 bits (1680), Expect = 1.370e-234 Identity = 350/376 (93.09%), Postives = 353/376 (93.88%), Query Frame = 1
Query: 1 MTATGNREVHNLLSIMVVLLPATWSLLMPPACFPSRFWVPRHGQVAPKMRCQGECGTTPAATAAANASRQASWGVGVSSWVAGATSFSRSALHAST-EGVGARWNGSSSAGGXXXXXXXXXGTDXXXXXXXXMGEGDDGEGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGR--PFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTEG 1119
MTATGNREVHNLLSIMVVLLPATWSLLMPP CFPSRFWVPRH QVAPKMRCQGECGTT AATAAANASRQASWGVGVSSWVAGATSFSRSA+HAST EGVGA WNGS XXXXXXXXXGTD XXXXX MGEGDD +GASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLV KAVTSGVLGLSGDMAAQFFEFQQKAESGR PFLKN RRLTAVAIDSILITGPALHALYGLLECLIPT GGFVPAALHV IDTFVFDPMFVASFFCVTGMLESR LR+SILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVP EG
Sbjct: 1 MTATGNREVHNLLSIMVVLLPATWSLLMPPTCFPSRFWVPRHAQVAPKMRCQGECGTTRAATAAANASRQASWGVGVSSWVAGATSFSRSAIHASTPEGVGAWWNGSXXXXXXXXXXXXXXGTDGXXXXXGAMGEGDDAKGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNNRRLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPAEG 376
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A6H5JK43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK43_9PHAE) HSP 1 Score: 618 bits (1594), Expect = 2.310e-221 Identity = 335/376 (89.10%), Postives = 343/376 (91.22%), Query Frame = 1
Query: 1 MTATGNREVHNLLSIMVVLLPATWSLLMPPACFPSRFWVPRHGQVAPKMRCQGECGTTPAATAAANASRQASWGVGVSSWVAGATSFSRSALHAST-EGVGARWNGSSSAGGXXXXXXXXXGTDXXXXXXXXMGEGDDGEGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGR--PFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTEG 1119
MTA GNREVHN+LSI+VVLLPA WSLLMP A FPSRFWVPRH QVAPKMRC G+CGTTPA ANASR+ASWGVGVSSWVA AT FSRSALHAST EG+GA WNG XXXXXXXX GTD XXXXXX MGEGDDG+ ASDMNACSTQHRDRGE AS TV+MSGG KKSA FGPWVWLSAMWGMYAAWLRRSPLV KAVTSGVLGLSGDMAAQFFEFQQKAESGR PFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHV IDTFVFDPMFVASFFCVTGMLESRSLR+SILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTEG
Sbjct: 1 MTARGNREVHNILSIIVVLLPAAWSLLMPRASFPSRFWVPRHPQVAPKMRCHGQCGTTPATAPVANASREASWGVGVSSWVAEATYFSRSALHASTPEGIGAWWNGXXXXXXXXXXXXXXNGTDGXXXXXXAMGEGDDGKRASDMNACSTQHRDRGEGASPTVEMSGGASKKSARFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRSLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTEG 376
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A7S3XMM5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMM5_HETAK) HSP 1 Score: 181 bits (459), Expect = 5.630e-52 Identity = 90/185 (48.65%), Postives = 126/185 (68.11%), Query Frame = 1
Query: 559 MYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFE-FQQKAESG---RPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 1101
+Y++ L+ +P++ KA+++ + SGD A Q +E +++ + G F+ + RR AV +D I ITGP LH Y LLE L+PT GG +PA LHVA DTF+ DP+FV +FF TG+ E R L LP LRREF A++GSW VS + P+QFA+FRY+P+ +RVL VN D+AWT+ MS+FSHK
Sbjct: 23 LYSSMLKNAPMLTKALSAAGIAASGDFATQIWEHWRETSNQGILVDKFILDRRRQLAVMMDGIFITGPILHLAYELLEHLVPTEGGGALPAVLHVAADTFLLDPLFVCTFFLTTGLFERRPLWADTLPRLRREFPAALRGSWSVSAVCLPVQFASFRYVPVRYRVLLVNCIDLAWTATMSFFSHK 207
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: W7TTT3_9STRA (Mpv17/PMP22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT3_9STRA) HSP 1 Score: 184 bits (468), Expect = 1.380e-51 Identity = 89/191 (46.60%), Postives = 125/191 (65.45%), Query Frame = 1
Query: 547 AMWGMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQ------QKAESGRPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 1101
++WG YA L P++ KA+T+G++ L GD+ AQ FE++ K E PF N R AV I+ ++ITGP LH LY LE +P A GF+ A HVA+D F+FDP+FV FF + G++E + L I P ++RE+W A++G W VS++F PL+FATFR LPL RVL VN D+ WT+V+S+F H+
Sbjct: 154 SLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMP-AQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHR 343
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A836CPL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL7_9STRA) HSP 1 Score: 175 bits (443), Expect = 2.710e-50 Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query: 742 TGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 1101
TGP LH LYGLLE IPT AGG +PAALHV +DTF+FDP+FV +FF T + E +S++ ++P L RE+WPAV GSW VS+LF PLQ+A FRYLPL+ RVLS+N CD+AWT+V+S+FSHK
Sbjct: 1 TGPGLHYLYGLLESHIPTTAGGLIPAALHVLLDTFLFDPVFVGTFFLTTALFEGKSMKREVVPQLEREYWPAVVGSWGVSVLFWPLQWACFRYLPLQLRVLSINVCDVAWTAVLSFFSHK 120
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A836CK90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK90_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.210e-49 Identity = 78/126 (61.90%), Postives = 97/126 (76.98%), Query Frame = 1
Query: 724 IDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 1101
ID + ITGP LH LYGLLE IPT AGG +PAA HV +DTF+FDP+FV SFF T + E RSLR + P L RE+WPA++GSW VS+LF P+Q+A FRYLPL+ RV S+N CD+AWT+ +SY SH+
Sbjct: 2 IDGVCITGPGLHFLYGLLESHIPTTAGGALPAAAHVLLDTFLFDPVFVCSFFFTTALFEGRSLRRDVAPRLAREYWPALRGSWGVSVLFWPVQWAAFRYLPLQLRVASINLCDVAWTAALSYASHR 127
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A6U1B1H0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1B1H0_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.640e-35 Identity = 73/181 (40.33%), Postives = 110/181 (60.77%), Query Frame = 1
Query: 556 GMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGRPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSH 1098
G Y A L +P+ KAV++G + GDM AQ E ++ +G PF + R A +D +L+TGP+LH Y LLE +IP+ G + + +D +FDP+ +A+FFC T ++E R+ ++ LR ++W G + VS P+QF +FRY+P++ RVL VN CD+AWTSV+S SH
Sbjct: 69 GWYLALLSSAPIRTKAVSTGCIECLGDMIAQTAEARR---TGLPF--DRVRSFACFVDGLLVTGPSLHYGYALLERVIPSVGGPVWATLIQITVDELIFDPIDIATFFCTTSLIE----RKDLVQRLRNDYWSTFWGGFGVSFACTPIQFISFRYMPVKTRVLVVNLCDLAWTSVVSVLSH 240
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: A0A7S2M641_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M641_9STRA) HSP 1 Score: 133 bits (334), Expect = 9.240e-33 Identity = 75/205 (36.59%), Postives = 108/205 (52.68%), Query Frame = 1
Query: 544 SAMWGMYAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGRPF---------------LKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGF-----VPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSH 1098
SA + Y + L +PL+ K VT G++ GD AQFFE++ K + N RR A ++ +LI+ P +H Y L E ++PT GG + A HV D + D +FV + TG+LE R+ ++P LRR + P ++ S + L PLQF +FR+LPL RVLSVNA D+ WT V+S+ SH
Sbjct: 72 SAFFAWYLSALDATPLLTKCVTGGLIAFVGDYGAQFFEWKSKQAPKESYNGSTTKQRSTISIHGTYNIRRGIARFLECLLISSPLMHYGYDLFETVVPTVGGGSALYRSIAALTHVLADCVLLDAIFVMTGIVFTGLLEGHRFRQQVIPNLRRVYLPTLKASVMTCGLLAPLQFLSFRFLPLSLRVLSVNAVDLIWTGVISFVSH 276
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: B8C2N5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2N5_THAPS) HSP 1 Score: 117 bits (292), Expect = 1.130e-25 Identity = 70/223 (31.39%), Postives = 110/223 (49.33%), Query Frame = 1
Query: 562 YAAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQ----QKAESGRPFLKNT----------------------------------RRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAAL----HVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKA 1104
Y L +PL+ K VT G++ GD AQ+FE++ +K +SG + RR A ++ +LI+ P +H Y L E ++P G + +++ HV D+ D +FV + TG+LE SLR+ ++P L+ + P ++ S + S PLQF +FR+LP++ RVLSVNA D+ WT V+S+ SH A
Sbjct: 185 YLTQLEAAPLLTKCVTGGLIAYCGDYGAQWFEYKSSRSKKQKSGGGIASESTAASELVTNSPRAGGPTGKRAEPSSLSIHGTYDFRRGVARFLECLLISSPLMHYGYDLFERIVPVVGGTGISSSIAALSHVLADSVFLDGIFVGTGIVATGILEGNSLRKHVIPNLKNVYVPTLKASVMTSSALMPLQFLSFRFLPVQLRVLSVNAVDLIWTGVISFVSHSA 407
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Match: D8LMD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD9_ECTSI) HSP 1 Score: 109 bits (272), Expect = 8.490e-25 Identity = 66/181 (36.46%), Postives = 98/181 (54.14%), Query Frame = 1
Query: 565 AAWLRRSPLVVKAVTSGVLGLSGDMAAQFFEFQQKAESGRPFLKNTR---RLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVAIDTFVFDPMFVASFFCVTGMLESRSLRESILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSH 1098
A+ L P++ K+++SG +GL GD+ AQ+ E+ A P K T R AV ID +LI GP LH Y +LE +P A + A V +D V DP+F F TG++E RS+R ILP + + V ++ + + P+Q F P+++RVL+ + D+ WT V S FSH
Sbjct: 7 ASALDAYPVLTKSISSGFIGLLGDVLAQWVEYLFGAAF--PPWKTTAMVWRSCAVMIDGLLINGPLLHYAYEMLESRMP-AGDSILAAMTQVCVDVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWAPIQIYLFNRYPVQYRVLTADLIDLVWTCVSSLFSH 184 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig164.3629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig164.3629.1 >prot_E-siliculosus-1a_F_contig164.3629.1 ID=prot_E-siliculosus-1a_F_contig164.3629.1|Name=mRNA_E-siliculosus-1a_F_contig164.3629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=373bp MTATGNREVHNLLSIMVVLLPATWSLLMPPACFPSRFWVPRHGQVAPKMRback to top mRNA from alignment at E-siliculosus-1a_F_contig164:2007..5159- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig164.3629.1 ID=mRNA_E-siliculosus-1a_F_contig164.3629.1|Name=mRNA_E-siliculosus-1a_F_contig164.3629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3153bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig164:2007..5159- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig164:2007..5159- >mRNA_E-siliculosus-1a_F_contig164.3629.1 ID=mRNA_E-siliculosus-1a_F_contig164.3629.1|Name=mRNA_E-siliculosus-1a_F_contig164.3629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2238bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig164:2007..5159- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |