mRNA_E-siliculosus-1a_F_contig1634.3608.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1634.3608.1 vs. uniprot
Match: D8LKF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF9_ECTSI) HSP 1 Score: 1019 bits (2635), Expect = 0.000e+0 Identity = 572/653 (87.60%), Postives = 580/653 (88.82%), Query Frame = 1
Query: 1 MAGTLFPSPEPETPPIDRWARGWVASRGTTARDWDRFPRGSSSDDGSEGGRSLRSVRSTATGMTSAHRHGXXXXXXXXXXXXXXXHARHRPYSSSCKGDPSGVPFPLSPEVREDQSLPPTIPGHSGRISRKGGDSGGKRGHGDXXXXXXXXXXXXXXXHQGSGGENESGCVWAGGTDGSDRQEDDLDSRLKDLGGREWTIDGAGELLIVDRVQGDAMPKTVVSALYNFRDVQDKLAGGENXXXXXXXXXXXXLDGXKRHRGGSGVAKTGGGISGSASFSKERKRSSLSLRRASRXXXXXXXXGSRRRGSGVFFELEPTLQPNLTNSLDRPGPGVSVSDGGSLKEGPSWPQDPEHMSRSEYRERQRRQDLSGSSMLDGGEDASSLGFSLGSVQSAPALRGLGLGLNGNAAGGXXRDXXXXXAVSXXXXXXXSGVGRGTSITAFEDVNPFVGGIRVDTLPPAGGDGKEAAGVGATGGDLSPLTASVGGQSGRFFPGAGPESSSVGGTSDDPHLALVKDPDWGRNVRGSPKEAGYLPKVKQVSRERPLTHERPYTRNPRDPRNVPARPNAHVSPKNSTSSRVGCNADPQYTGDDGGSTKSSFPCLPMSLTGWGEGGGCGSLGKGERVPGRPTRGKKGRGMITMTKPKEIIVQGLLR 1959
MAGTLFPSPEPETPPIDRWARGWVASR TT RDWDRFPRGSSSDDGSEGGRSLRSVRSTATGMTSAHRHGXXXXX HARHRP+SSSCK D SGVPFPL+PEVREDQSLPPTIPGHS R+SRKGGDS KRG G QGSGGE+ESGC+W GGTDGSDRQEDDLDSRLKDLGGREWTIDGAGELLIVDRVQGDAMPKTVVSALYNFRDV+DKLAGGEN XXXXXXXLDG KRHR GSGV KT G ISGSASFSKERKRSSLSLRRASRXXXXXXXX RRRGSG FFELEPTLQPNL NSLDRPGPGVSVSDGGSLKEGPSWPQDPEHMSRSEYRERQRRQDL+GSSMLDGGEDASSLGFSLGSVQSAPALRGLGLGLNGNAA G RD XXX XXXXXXX GVGRGTSITAFEDVNPF GGIRVDT PPAGGDG+ AAG T GDLSPLTASVGGQSG FFPGAGPESSSVG TSDDPHLALVKDPDWGRNVRGSPKEAGYLPKVKQVSRERPLTHERPYTRNPRDPRNVPARPNAHVSPKNSTSSRVGCNADPQYTGDDGGSTKSSFP LPMSLTGWGEGGG GSLGKG VPGRP RGKKGRGMITMTKPKEIIVQGLLR
Sbjct: 1 MAGTLFPSPEPETPPIDRWARGWVASRRTTVRDWDRFPRGSSSDDGSEGGRSLRSVRSTATGMTSAHRHGXXXXX----------HARHRPHSSSCKEDSSGVPFPLAPEVREDQSLPPTIPGHSVRMSRKGGDSRAKRGRGGHCAKRTGANRGEGGRRQGSGGESESGCLWDGGTDGSDRQEDDLDSRLKDLGGREWTIDGAGELLIVDRVQGDAMPKTVVSALYNFRDVRDKLAGGENGGGGVXXXXXXXLDGGKRHRDGSGVGKTRGSISGSASFSKERKRSSLSLRRASRXXXXXXXXXXRRRGSGAFFELEPTLQPNLANSLDRPGPGVSVSDGGSLKEGPSWPQDPEHMSRSEYRERQRRQDLTGSSMLDGGEDASSLGFSLGSVQSAPALRGLGLGLNGNAAAGGGRDGGXXXXXXXXXXXXXXGVGRGTSITAFEDVNPFAGGIRVDTSPPAGGDGRGAAGASGTRGDLSPLTASVGGQSGSFFPGAGPESSSVGETSDDPHLALVKDPDWGRNVRGSPKEAGYLPKVKQVSRERPLTHERPYTRNPRDPRNVPARPNAHVSPKNSTSSRVGCNADPQYTGDDGGSTKSSFPSLPMSLTGWGEGGGGGSLGKGGGVPGRPMRGKKGRGMITMTKPKEIIVQGLLR 643 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1634.3608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1634.3608.1 >prot_E-siliculosus-1a_F_contig1634.3608.1 ID=prot_E-siliculosus-1a_F_contig1634.3608.1|Name=mRNA_E-siliculosus-1a_F_contig1634.3608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=654bp MAGTLFPSPEPETPPIDRWARGWVASRGTTARDWDRFPRGSSSDDGSEGGback to top mRNA from alignment at E-siliculosus-1a_F_contig1634:5150..10433- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1634.3608.1 ID=mRNA_E-siliculosus-1a_F_contig1634.3608.1|Name=mRNA_E-siliculosus-1a_F_contig1634.3608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5284bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1634:5150..10433- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1634:5150..10433- >mRNA_E-siliculosus-1a_F_contig1634.3608.1 ID=mRNA_E-siliculosus-1a_F_contig1634.3608.1|Name=mRNA_E-siliculosus-1a_F_contig1634.3608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3924bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1634:5150..10433- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |