mRNA_E-siliculosus-1a_F_contig1633.3606.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1633.3606.1
Unique NamemRNA_E-siliculosus-1a_F_contig1633.3606.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: D7FRQ6_ECTSI (Putative methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ6_ECTSI)

HSP 1 Score: 469 bits (1207), Expect = 2.030e-163
Identity = 261/390 (66.92%), Postives = 270/390 (69.23%), Query Frame = 1
Query:  103 TRYTIDVDVHPDVAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKGGGDAGKR--------------------------------------------RGNRDNRLREPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGVITLRSNWRTYLDEVCRAVLAINGAAQTTEGEGDSAADEGGV-------------------------------------------------------------------VPATVAAAAASYAASARAGPLTFVPAVPAATNFEAKYVVVGETVYELRLEPKLS 939
            TRYTIDVDVHPD A VAVKHALQLPRFLHHYPISSHTQAAYR+AVDFVL FHRS QEQQQ+SP PV+LDSGCGTGRSS+LLARSYPHLPVIGIDRSAVRLSKGGGDAGKR                                            +GNRDNRLREPLP NLLLLRADLVDLWILASR+NAWEI EHYILYPNPYPKRSQLRSRWHGHS+FPVLLSLGGVITLRSNWRTYLDEVC+AVLAINGAAQTTEGEGDSAADEGG+                                                                   VPATVAAAA SYAASARAGPLTFVPAVPAATNFEAKYV VGETVYELRLEPKLS
Sbjct:    2 TRYTIDVDVHPDAASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLAFHRSPQEQQQRSPLPVVLDSGCGTGRSSVLLARSYPHLPVIGIDRSAVRLSKGGGDAGKRVEEHMHQHNSSTRQAGAEQGRNDRVDARRAHGSSGEKNRPPLQKKGNRDNRLREPLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTEGEGDSAADEGGLGDLESKRTSSGGKDGAGEVSGTDAAVASAAVSTKLSATESDDSAETTGGDVSFGIGRALIGDESRAEVPATVAAAAVSYAASARAGPLTFVPAVPAATNFEAKYVAVGETVYELRLEPKLS 391          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: B7GB80_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GB80_PHATC)

HSP 1 Score: 184 bits (466), Expect = 2.360e-52
Identity = 133/323 (41.18%), Postives = 168/323 (52.01%), Query Frame = 1
Query:    1 HRFFWSPRRRRTRCVSPEGISFRSMHASPSTAVTTRYTIDVDVHPD---VAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKG-------GGDAGKRRGNRDNRLREPLPTNLLLLRADLVDLWILASRDNAWE--IIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGV-ITLRSNWRTYLDEVCRAVLAINGAAQTTEGEGDSAADEGGVVPATVAAAAASYAASARAGPLTFVPAVPAATNFEAKYVVVGETVYELRLEP 930
            H  F SP RRRT  + P G+   S   S S+ V+TRYTI      D   +  +  KH   L RFL   P+++HT  A+R   D V               +P+ILDSGCGTGRSS+ L R YP   V+GIDRS  RLSK          D G    + D  L      N+ L+RA+LVD W     D  WE  I +H++LYPNPYPK+S+++SR + H  FP+LL LGG  +T+RSNWRTYLDE   AV        TT  +GD+  +  G         A  Y AS +       P +   TNFE KY  VGE  YEL L+P
Sbjct:   18 HGLFLSPWRRRTLSIGPCGLRNVS---SRSSEVSTRYTITSCPPTDTETLRTIVEKHVRSLDRFLQAKPVAAHTLRAFRQVHDAV------------PVDTPIILDSGCGTGRSSLHLGRLYPDAVVLGIDRSVARLSKNPNFQSSVASDDGP---SDDALLVRQAADNVWLVRAELVDFWRCCI-DAGWESSIAQHFVLYPNPYPKKSRIKSRLYAHPGFPLLLRLGGDRLTVRSNWRTYLDEFSAAVHTAAACLSTTPDDGDTRDEVDGKTGVYGKNYAQRYLASTQEEAKLLDPTLIPWTNFEEKYHNVGERTYELVLKP 321          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: A0A8J5XCC6_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCC6_DIALT)

HSP 1 Score: 162 bits (409), Expect = 3.160e-44
Identity = 109/273 (39.93%), Postives = 147/273 (53.85%), Query Frame = 1
Query:  130 HPDVAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSK-----GGGDAGKRRGNRDNRLREPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGVITLRSNWRTYLDEVCRAVLAINGAAQTTEGEGD---SAADEGGVVPATVAAAAASYAASARAGPLTFVPAVPAATNFEAKYVVVGETVYELRL 924
            H   A VA KH L+L  FLH+ P   HT+A +     ++ E H +R     +    ++LDSGCGTGRS++LLA+ +P   VIG+DRS  RL K       G A   RG  D    +P   N LL+RADL   W LA  ++ W +  H +L+PNPYPK + L  RWH H  +P++L+LGG + LRSNWRTYL+E   A  AI   A +    GD    + D   + P  V AAA + AA  R     +  + P  + FEAKY      ++ L L
Sbjct:   30 HARTAAVACKHVLELDSFLHNAPTPEHTRATFGATAAWLAERHGAR-----RGAGGLLLDSGCGTGRSTLLLAQQHPDCLVIGVDRSLARLRKDKRDISPGAACAPRG--DEGPVQPAFDNALLVRADLPAFWRLAV-ESGWRLRAHRLLFPNPYPKPAHLPRRWHAHPSWPLVLALGGELELRSNWRTYLEETVIATSAIAHLASSDGEAGDLPPPSCDAAALRP-DVRAAARALAAGLRVE--QYAASAPFVSEFEAKYEAARLPLFRLAL 291          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: A0A0B4XNW9_9GAMM (Methyltransferase n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A0B4XNW9_9GAMM)

HSP 1 Score: 159 bits (402), Expect = 5.610e-44
Identity = 90/199 (45.23%), Postives = 117/199 (58.79%), Query Frame = 1
Query:  130 HPDVAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKGGGDAGKRRGNRDNRLR-EPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGVITLRSNWRTYLDEVCRAVLAING 723
            H  +A V V+H     R     P+++HT+AA+  A D+            Q +  P++LDSGCGTGRSS+ LA  YP   VIG+D+S  RL +G              LR +PLP NLLLLRA+  D W LA  +  W + EH + YPNP+PK + LR RWHGH +FPVLL LGG + LRSNW  YL+E+ R  LA+ G
Sbjct:   16 HEQLAAVVVRHLAHPWRA----PVAAHTRAAFAEAADW---------RAAQGADRPLVLDSGCGTGRSSVWLAGHYPEALVIGLDQSGERLRRG-------------HLRFDPLPANLLLLRAEAADFWRLAV-EAGWRVREHCLFYPNPWPKSAHLRRRWHGHPVFPVLLQLGGQLRLRSNWPVYLEEM-RLALALAG 186          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: UPI000362CCDA (methyltransferase domain-containing protein n=1 Tax=Kushneria aurantia TaxID=504092 RepID=UPI000362CCDA)

HSP 1 Score: 159 bits (403), Expect = 5.780e-44
Identity = 93/210 (44.29%), Postives = 123/210 (58.57%), Query Frame = 1
Query:  112 TIDVDVHPDVAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKGGGDAGKRRGNRDNRLREPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGVITLRSNWRTYLDEVCRAVLAINGAAQTTE 741
            T   DVHPD+AG  V+ AL+ P      P+++H + A+  A+DF            ++    +ILD+GCGTG S+  LA+ YP   VIGIDRSA RLS+    AG             LP N LLLRADLVD W LA   +      H++LYPNPYPK SQL+ RWH H +FPVL++LGG + LRSNWR Y++E  +A+  +   A + E
Sbjct:   10 TAQRDVHPDLAG-RVRRALESPW---QRPLAAHNREAFAQALDFY-----------RRCGGELILDAGCGTGLSTRQLAQRYPEACVIGIDRSAERLSRQADAAGA------------LPGNALLLRADLVDFWRLALAHDLCPA-RHFLLYPNPYPKASQLKRRWHAHPVFPVLMALGGELELRSNWRLYVEEFAQALNQVTALAVSVE 191          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: UPI001679E76A (class I SAM-dependent methyltransferase n=1 Tax=Kushneria pakistanensis TaxID=1508770 RepID=UPI001679E76A)

HSP 1 Score: 157 bits (396), Expect = 6.020e-43
Identity = 95/208 (45.67%), Postives = 118/208 (56.73%), Query Frame = 1
Query:  100 TTRYTIDVDVHPDVAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKGGGDAGKRRGNRDNRLREPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGVITLRSNWRTYLDEVCRAVLAING 723
            T  Y+    +HPD+A   V+ AL  P      PI+ HT+AA+  A  F            Q    P+ILD+GCGTGRS+  LAR YP   V+GIDRSA RLS+   D  +  G          P N  LLRADL+D W LA     W+ I H I YPNPYPK SQL+ RWH H +FPVLL+LGG + LRSNW+ Y++E   AV  + G
Sbjct:    6 TPVYSTQAGLHPDLAH-HVQRALDHPW---QRPIADHTRAAFETAQQFY-----------QAHGGPLILDAGCGTGRSTRQLARYYPKACVLGIDRSADRLSR---DYTRELG--------AFPDNARLLRADLIDFWRLAHAAG-WQPIRHCIFYPNPYPKASQLKKRWHAHPVFPVLLALGGELELRSNWQIYVEEFACAVDLVTG 186          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: A0A3D9DW02_9GAMM (tRNA G46 methylase TrmB n=1 Tax=Kushneria indalinina DSM 14324 TaxID=1122140 RepID=A0A3D9DW02_9GAMM)

HSP 1 Score: 156 bits (395), Expect = 6.950e-43
Identity = 94/210 (44.76%), Postives = 122/210 (58.10%), Query Frame = 1
Query:  100 TTRYTIDVDVHPDVAGVAVKHAL--QLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKGGGDAGKRRGNRDNRLREPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGVITLRSNWRTYLDEVCRAVLAING 723
            T  ++    +HPD+A   V+ AL  Q  R     PI+ HT AA+  A  F            Q    P+ILD+GCGTGRS+  LAR +P   V+GIDRSA RLS+   D  +  G          P N LL+RADLVD W LA     W+ + H++LYPNPYPK SQL+ RWH H +FPV+++LGGV+TLRSNW+ Y+DE   A+    G
Sbjct:    6 TPVHSTQAGLHPDLAH-HVQRALDSQWQR-----PIADHTCAAFETAQQFY-----------QAHGGPLILDAGCGTGRSTRQLARYHPEACVLGIDRSADRLSR---DYTRELG--------AFPDNALLVRADLVDFWRLAY-SAGWQPVRHFLLYPNPYPKASQLKRRWHAHPVFPVVMALGGVLTLRSNWQVYVDEFACAINLATG 186          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: A0A7S2EKG6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKG6_TRICV)

HSP 1 Score: 157 bits (398), Expect = 2.240e-42
Identity = 108/284 (38.03%), Postives = 156/284 (54.93%), Query Frame = 1
Query:  103 TRYTIDVDV-----HPDVAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKGGGDAGKRRGNRDNRLR--EPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGG-VITLRSNWRTYLDEVCRAVLAINGAAQTTEGEGDSAADEGGVVPATVAAAAASYAASARAGPLTFVPAVPAATNFEAKYVVVGETVYELRLEP 930
            T+YTID  V       ++  V  KH   L  FL + PI+ HT+AA+    D  L+       QQ++     ILDSGCGTGRS++LL   YP   +IG+DRS VRL +   +  +   + D+ LR    L +N+LL+RA+L D W     +  WEI  HYILYPNPYPK+++L+ R++ H  FP++L+LGG  I +RSNW  YL E  ++V+  +   + ++   ++A                +Y  +A+ GP   +  + A T FE KY  VGE  YEL L P
Sbjct:   53 TQYTIDDGVCAPTDEAELRKVVQKHCHTLEVFLENRPIAKHTKAAFLSVKD-ALQNKNDVSVQQRK----FILDSGCGTGRSTLLLGEQYPDHTIIGVDRSFVRLKRNSVE-NEVNESTDDSLRPFHALSSNVLLVRAELTDFW-RCCLEEGWEIDYHYILYPNPYPKKNRLKKRFYAHPSFPLILALGGGKIVIRSNWEGYLKEFAQSVVYASDYYEQSKDRENTAK---------------AYVKNAKDGPHERLDKLVAWTLFEKKYDDVGEKTYELILRP 314          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: A0A7S3PXI0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXI0_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.290e-42
Identity = 105/287 (36.59%), Postives = 150/287 (52.26%), Query Frame = 1
Query:   94 AVTTRYTIDVDVHP-----DVAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKG----GGDAGKRRGNRDNRLREPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGV-ITLRSNWRTYLDEVCRAVLAINGAAQTTEGEGDSAADEGGVVPATVAAAAASYAASARAGPLTFVPAVPAATNFEAKYVVVGETVYELRL 924
            ++ T+YTI+ DV P     ++  +  KH   L RF  + PI+ HT AA+   +  +             +   +ILDSGCGTGRS++LL   YP   +IG+DRS VRL++      GDA       + R  + + +N+LL+RA+L D W     D   E+ +HYILYPNPYPK+++++ R++ H  FP++L+LGG  I +RSNW  YL E  ++V   +    + E E                  A  Y   A+ GP   V    A TNFE KY  VGE  YEL L
Sbjct:   53 SMATQYTINDDVCPPIDEAELRKIVQKHCECLQRFTKNKPIAQHTSAAFDQILPHI------------DTTKKIILDSGCGTGRSTLLLGERYPSHTIIGVDRSFVRLNRNCISKKGDADSDSNENNQRPFQAVSSNVLLVRAELSDFW-RCCLDAKLEVDQHYILYPNPYPKKNRIKKRFYAHPSFPIILNLGGSKIVVRSNWEGYLKEFAKSVEYADELYVSQEMEN----------------LALPYLQDAKVGPKERVDKTVAWTNFEKKYDDVGEKTYELIL 310          
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Match: A0A7V7KGH6_9GAMM (Methyltransferase domain-containing protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A7V7KGH6_9GAMM)

HSP 1 Score: 155 bits (391), Expect = 3.150e-42
Identity = 92/223 (41.26%), Postives = 123/223 (55.16%), Query Frame = 1
Query:   73 MHASPSTAVTTRYTIDVDVHPDVAGVAVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPVILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKGGGDAGKRRGNRDNRLREPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLRSRWHGHSIFPVLLSLGGVITLRSNWRTYLDEVCRAVLAINGAAQTTE 741
            MHA+  T  T +    +  H D+A   V+ AL+ P      P+++HT+ A+   + +       R  Q      P+ILD+GCG G S+  LA  YP   VIG+DRSA RLS+  G                +  N LL+RADLVD W LA  +  W+   HY+LYPNPYPK ++L+ RWHGH +FPVLL+LGG + LRSNWR YL+E   A+    G   T E
Sbjct:    1 MHATSRTITTNQ----LGPHKDLAR-RVERALRHPL---RKPVAAHTREAFANCLSW-------RARQDANGARPLILDAGCGVGLSTRRLAERYPDHAVIGVDRSAARLSRDHG---------------AIADNALLVRADLVDFWRLAL-EAGWQPARHYLLYPNPYPKSARLKLRWHGHPVFPVLLALGGRLELRSNWRLYLEEFALALAQATGVTATVE 192          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1633.3606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ6_ECTSI2.030e-16366.92Putative methyltransferase n=2 Tax=Ectocarpus TaxI... [more]
B7GB80_PHATC2.360e-5241.18Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A8J5XCC6_DIALT3.160e-4439.93Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A0B4XNW9_9GAMM5.610e-4445.23Methyltransferase n=2 Tax=Alcanivorax TaxID=59753 ... [more]
UPI000362CCDA5.780e-4444.29methyltransferase domain-containing protein n=1 Ta... [more]
UPI001679E76A6.020e-4345.67class I SAM-dependent methyltransferase n=1 Tax=Ku... [more]
A0A3D9DW02_9GAMM6.950e-4344.76tRNA G46 methylase TrmB n=1 Tax=Kushneria indalini... [more]
A0A7S2EKG6_TRICV2.240e-4238.03Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3PXI0_9STRA2.290e-4236.59Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7V7KGH6_9GAMM3.150e-4241.26Methyltransferase domain-containing protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1633contigE-siliculosus-1a_F_contig1633:8760..10219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size942
Model size942
Exons4
Ec32 orthologEc-00_003460.1
Ec32 ortholog descriptionputative tRNA methyltransferase
Hectar predicted targeting categorymitochondrion
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2DK0Q@1,2S61T@2759
Seed eggNOG ortholog2880.D7FRQ6
Seed ortholog evalue4.1e-130
Seed ortholog score471.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1633.3606.1prot_E-siliculosus-1a_F_contig1633.3606.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1633 8760..10219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928143.0170903-CDS-E-siliculosus-1a_F_contig1633:8759..88381622928143.0170903-CDS-E-siliculosus-1a_F_contig1633:8759..8838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1633 8760..8838 +
1696318821.5876162-CDS-E-siliculosus-1a_F_contig1633:8759..88381696318821.5876162-CDS-E-siliculosus-1a_F_contig1633:8759..8838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1633 8760..8838 +
1622928143.030891-CDS-E-siliculosus-1a_F_contig1633:9029..93821622928143.030891-CDS-E-siliculosus-1a_F_contig1633:9029..9382Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1633 9030..9382 +
1696318821.6046832-CDS-E-siliculosus-1a_F_contig1633:9029..93821696318821.6046832-CDS-E-siliculosus-1a_F_contig1633:9029..9382Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1633 9030..9382 +
1622928143.0435212-CDS-E-siliculosus-1a_F_contig1633:9514..98601622928143.0435212-CDS-E-siliculosus-1a_F_contig1633:9514..9860Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1633 9515..9860 +
1696318821.6139197-CDS-E-siliculosus-1a_F_contig1633:9514..98601696318821.6139197-CDS-E-siliculosus-1a_F_contig1633:9514..9860Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1633 9515..9860 +
1622928143.0552728-CDS-E-siliculosus-1a_F_contig1633:10055..102191622928143.0552728-CDS-E-siliculosus-1a_F_contig1633:10055..10219Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1633 10056..10219 +
1696318821.625793-CDS-E-siliculosus-1a_F_contig1633:10055..102191696318821.625793-CDS-E-siliculosus-1a_F_contig1633:10055..10219Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1633 10056..10219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1633.3606.1

>prot_E-siliculosus-1a_F_contig1633.3606.1 ID=prot_E-siliculosus-1a_F_contig1633.3606.1|Name=mRNA_E-siliculosus-1a_F_contig1633.3606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=314bp
HRFFWSPRRRRTRCVSPEGISFRSMHASPSTAVTTRYTIDVDVHPDVAGV
AVKHALQLPRFLHHYPISSHTQAAYRYAVDFVLEFHRSRQEQQQQSPSPV
ILDSGCGTGRSSILLARSYPHLPVIGIDRSAVRLSKGGGDAGKRRGNRDN
RLREPLPTNLLLLRADLVDLWILASRDNAWEIIEHYILYPNPYPKRSQLR
SRWHGHSIFPVLLSLGGVITLRSNWRTYLDEVCRAVLAINGAAQTTEGEG
DSAADEGGVVPATVAAAAASYAASARAGPLTFVPAVPAATNFEAKYVVVG
ETVYELRLEPKLS*
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mRNA from alignment at E-siliculosus-1a_F_contig1633:8760..10219+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1633.3606.1 ID=mRNA_E-siliculosus-1a_F_contig1633.3606.1|Name=mRNA_E-siliculosus-1a_F_contig1633.3606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1460bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1633:8760..10219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCGCTTCTTCTGGTCACCTCGACGCCGCAGGACGCGGTGTGTTTCCCC GGAGGGCATCAGTTTTCGGTCGATGCACGGTGGCACTTTCGACATCTAGC AGGCAGAGTACATGCTTTTGATAGCTCGTTCTCGGCCAGGGGGGGGCTTG CTGAAAGACTGCGACATGATCATAAGAAGAGTGGTGTACGGCTGTGGTCT GGCGTCGTGTTGACAATGACCGCAGGCAGCGCGCAAGAGAGAGGCGGTTC TCCCACAACCACGACGCCAGCATCGCCATCTACTGCTGTTACGACGAGAT ACACCATAGATGTAGACGTGCACCCGGACGTTGCAGGCGTGGCCGTGAAG CATGCCCTCCAGCTTCCCCGGTTTCTGCATCACTATCCAATCTCGTCACA TACCCAGGCCGCCTACCGCTACGCGGTAGATTTCGTGCTGGAGTTCCACC GTTCACGACAGGAACAGCAACAGCAATCTCCTTCGCCTGTAATCCTGGAT TCTGGCTGCGGCACTGGGCGTTCAAGCATCTTGCTCGCCAGATCTTACCC TCACCTTCCCGTGATAGGAATCGACCGGTCTGCAGTCCGGCTTTCCAAAG GAGGAGGGGATGCGGGAAAGCGGGTTGAGGAGCACATGCATCAACGCGAC AGCTCTACGAGACAAGCAGGCGCGGAGCAGGCAAGCGACGACCGCGTTGA CGCACGAAGAGCTCACGGTAGCTCAGGCGAGAAGAACCCCTCCCCTTTGC AGAAGAGAGGCAACCGTGACAATCGACTTAGGGAGCCTCTTCCCACAAAC CTTCTACTCCTTCGCGCGGACCTTGTGGACCTGTGGATACTGGCGTCGAG GGACAACGCTTGGGAAATCATTGAACACTACATCCTTTACCCCAATCCGT ACCCAAAGCGCTCCCAGCTACGATCACGGTGGCACGGTCATTCTATTTTC CCGGTCCTACTCAGCCTTGGTGGGGTGATAACGCTACGCTCCAACTGGAG GACGTATCTGGACGAGGTCTGCCGGGCAGTGCTGGCCATCAATGGTGCAG CGCAGACGACGGAGGGCGAGGGAGACTCGGCTGCCGATGAAGGCGGTGTT GGTGATCTGGAGTCTAAGAGGACAAGCAGCGGGGGCAAAGACGGTGCCGG GGAAGTGGCTGGGACGGATGCAGCTGTCGCATCAACAGCCGTGTCCACGA CGCGATCGGCGACCGAAAGCGATGAAAGGGCAGAAACAACCGGTGGGGAC GTGAGTCTTGGTAGTGCCTTGACTCGTGATGAAAGTAGAGCCGAAGTTCC GGCTACCGTCGCTGCCGCAGCCGCCTCTTACGCGGCTAGCGCAAGGGCGG GCCCCTTGACCTTTGTTCCAGCAGTGCCTGCTGCAACAAACTTCGAGGCA AAGTATGTTGTAGTCGGTGAGACGGTGTACGAGCTTCGGCTTGAGCCGAA ACTATCGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1633:8760..10219+

>mRNA_E-siliculosus-1a_F_contig1633.3606.1 ID=mRNA_E-siliculosus-1a_F_contig1633.3606.1|Name=mRNA_E-siliculosus-1a_F_contig1633.3606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1884bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1633:8760..10219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCGCTTCTTCTGGTCACCTCGACGCCGCAGGACGCGGTGTGTTTCCCC
GGAGGGCATCAGTTTTCGGTCGATGCACGCACCGCTTCTTCTGGTCACCT
CGACGCCGCAGGACGCGGTGTGTTTCCCCGGAGGGCATCAGTTTTCGGTC
GATGCACGCATCGCCATCTACTGCTGTTACGACGAGATACACCATAGATG
TAGACGTGCACCCGGACGTTGCAGGCGTGGCCGTGAAGCATGCCCTCCAG
CTTCCCCGGTTTCTGCATCACTATCCAATCTCGTCACATACCCAGGCCGC
CTACCGCTACGCGGTAGATTTCGTGCTGGAGTTCCACCGTTCACGACAGG
AACAGCAACAGCAATCTCCTTCGCCTGTAATCCTGGATTCTGGCTGCGGC
ACTGGGCGTTCAAGCATCTTGCTCGCCAGATCTTACCCTCACCTTCCCGT
GATAGGAATCGACCGGTCTGCAGTCCGGCTTTCCAAAGGAGGAGGGGATG
CGGGAAAGCGGCATCGCCATCTACTGCTGTTACGACGAGATACACCATAG
ATGTAGACGTGCACCCGGACGTTGCAGGCGTGGCCGTGAAGCATGCCCTC
CAGCTTCCCCGGTTTCTGCATCACTATCCAATCTCGTCACATACCCAGGC
CGCCTACCGCTACGCGGTAGATTTCGTGCTGGAGTTCCACCGTTCACGAC
AGGAACAGCAACAGCAATCTCCTTCGCCTGTAATCCTGGATTCTGGCTGC
GGCACTGGGCGTTCAAGCATCTTGCTCGCCAGATCTTACCCTCACCTTCC
CGTGATAGGAATCGACCGGTCTGCAGTCCGGCTTTCCAAAGGAGGAGGGG
ATGCGGGAAAGCGGAGAGGCAACCGTGACAATCGACTTAGGGAGCCTCTT
CCCACAAACCTTCTACTCCTTCGCGCGGACCTTGTGGACCTGTGGATACT
GGCGTCGAGGGACAACGCTTGGGAAATCATTGAACACTACATCCTTTACC
CCAATCCGTACCCAAAGCGCTCCCAGCTACGATCACGGTGGCACGGTCAT
TCTATTTTCCCGGTCCTACTCAGCCTTGGTGGGGTGATAACGCTACGCTC
CAACTGGAGGACGTATCTGGACGAGGTCTGCCGGGCAGTGCTGGCCATCA
ATGGTGCAGCGCAGACGACGGAGGGCGAGGGAGACTCGGCTGCCGATGAA
GGCGGTGTTGAGAGGCAACCGTGACAATCGACTTAGGGAGCCTCTTCCCA
CAAACCTTCTACTCCTTCGCGCGGACCTTGTGGACCTGTGGATACTGGCG
TCGAGGGACAACGCTTGGGAAATCATTGAACACTACATCCTTTACCCCAA
TCCGTACCCAAAGCGCTCCCAGCTACGATCACGGTGGCACGGTCATTCTA
TTTTCCCGGTCCTACTCAGCCTTGGTGGGGTGATAACGCTACGCTCCAAC
TGGAGGACGTATCTGGACGAGGTCTGCCGGGCAGTGCTGGCCATCAATGG
TGCAGCGCAGACGACGGAGGGCGAGGGAGACTCGGCTGCCGATGAAGGCG
GTGTTGTTCCGGCTACCGTCGCTGCCGCAGCCGCCTCTTACGCGGCTAGC
GCAAGGGCGGGCCCCTTGACCTTTGTTCCAGCAGTGCCTGCTGCAACAAA
CTTCGAGGCAAAGTATGTTGTAGTCGGTGAGACGGTGTACGAGCTTCGGC
TTGAGCCGAAACTATCGTAGTTCCGGCTACCGTCGCTGCCGCAGCCGCCT
CTTACGCGGCTAGCGCAAGGGCGGGCCCCTTGACCTTTGTTCCAGCAGTG
CCTGCTGCAACAAACTTCGAGGCAAAGTATGTTGTAGTCGGTGAGACGGT
GTACGAGCTTCGGCTTGAGCCGAAACTATCGTAG
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