mRNA_E-siliculosus-1a_F_contig1618.3536.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1618.3536.1
Unique NamemRNA_E-siliculosus-1a_F_contig1618.3536.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1618.3536.1 vs. uniprot
Match: A0A6H5KDA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.010e-12
Identity = 58/69 (84.06%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   40 REASVLRKQATDREAALKKDIDQAKGAAXXXXXXXXXXXXXXXXXXXXXXXXXXDLRELGDESARMLDE 246
            REASVLRKQA DREAALKKDIDQAKGAA         XXXXXXXXXXXXXXXX DLRELGDESARMLDE
Sbjct:   18 REASVLRKQAADREAALKKDIDQAKGAAAALKNANLSXXXXXXXXXXXXXXXXRDLRELGDESARMLDE 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1618.3536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDA3_9PHAE1.010e-1284.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1618contigE-siliculosus-1a_F_contig1618:538..1623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size246
Model size248
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928132.1306896-CDS-E-siliculosus-1a_F_contig1618:537..7571622928132.1306896-CDS-E-siliculosus-1a_F_contig1618:537..757Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1618 538..757 -
1696318816.8381817-CDS-E-siliculosus-1a_F_contig1618:537..7571696318816.8381817-CDS-E-siliculosus-1a_F_contig1618:537..757Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1618 538..757 -
1622928132.1460178-CDS-E-siliculosus-1a_F_contig1618:1597..16231622928132.1460178-CDS-E-siliculosus-1a_F_contig1618:1597..1623Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1618 1598..1623 -
1696318816.8456345-CDS-E-siliculosus-1a_F_contig1618:1597..16231696318816.8456345-CDS-E-siliculosus-1a_F_contig1618:1597..1623Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1618 1598..1623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1618.3536.1prot_E-siliculosus-1a_F_contig1618.3536.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1618 538..1623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1618.3536.1

>prot_E-siliculosus-1a_F_contig1618.3536.1 ID=prot_E-siliculosus-1a_F_contig1618.3536.1|Name=mRNA_E-siliculosus-1a_F_contig1618.3536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=82bp
LRKVVRAAREERSREASVLRKQATDREAALKKDIDQAKGAAAALKDANLS
LEGTVAGLKDREAVLERDLRELGDESARMLDE
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mRNA from alignment at E-siliculosus-1a_F_contig1618:538..1623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1618.3536.1 ID=mRNA_E-siliculosus-1a_F_contig1618.3536.1|Name=mRNA_E-siliculosus-1a_F_contig1618.3536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1086bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1618:538..1623- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGAGAAAAGTCGTGCGGGCGGCGAGGTCAGTTTGCGTGTCGTTACGGGG
GAGCATGTTGTGTATGTGCCGGTAGAGATGGTGGTGGTTTTGTTTGTTGT
CGGCGTTCGTGTCGTACAGCAGTAGTAGTACGGGCCCGCAACTCAAGAAA
TCTTCCGTTACGAAGAAAGAGGTTCAATTTTTTATGAACAAGAAGGAAAT
AGAAGAGTTTAGCGGTAGGTCCTACACTACACTCTGCTGGTATATAATAA
CCTGTTCTCGACGGTGGCGACGAGATAATAAATTGAGCCCGGACTCGACA
AAGACGTTTGGCGTTTCTTAGTGCGGAACGTACGCGTTGTTTTGTTGCCT
TTGTGCTTCGTGTGTTTTAGAATATGTAAGTACATGAACACACAGAAAGA
CTAGATACCCGTTCATTGCCCTTGTGCTTGGTGTTGCTATTGTCGCCACC
TTCTGCTGCATCACGTCCGGGTTGTTGCTCTCGGGTATTTGAAAATAAAC
ACACGATGACAGAAAGATTCCCCTTTCGAGGTAACACTCCAGTCGAAGGG
ATGCGTTGCATCAAAGTAAAGTTGGCAGTTGGTCAATGGTGTCTATGGTG
TCAAATCACGAGGTCTCAACCCTGATGGTTATATACCCAACGCAGCGAGC
CAACGAGTGTTCTCCTACACAAAAAATTAACTGTAGACAATGACCGTTTC
CCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTCCCTGCCTCGCTCTCTC
TGTGAAAACCTCTCCCTGTCTCTCCGGGTGGCAACTGCACCCCCAAAAAC
ACACACACAATCCAAGGGAGGAACGTAGCCGAGAGGCATCTGTCCTCCGT
AAGCAAGCCACCGACCGGGAGGCCGCGCTAAAGAAGGACATCGACCAGGC
CAAAGGGGCAGCGGCAGCTCTCAAGGACGCTAACCTTTCCCTCGAGGGCA
CAGTCGCCGGTCTGAAGGACAGGGAAGCTGTCCTGGAGAGGGACCTCCGG
GAGCTCGGGGACGAGAGCGCCAGGATGCTCGACGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1618:538..1623-

>mRNA_E-siliculosus-1a_F_contig1618.3536.1 ID=mRNA_E-siliculosus-1a_F_contig1618.3536.1|Name=mRNA_E-siliculosus-1a_F_contig1618.3536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1618:538..1623- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGAGAAAAGTCGTGCGGGCGGCGAGCTGAGAAAAGTCGTGCGGGCGGCG
AGGGAGGAACGTAGCCGAGAGGCATCTGTCCTCCGTAAGCAAGCCACCGA
CCGGGAGGCCGCGCTAAAGAAGGACATCGACCAGGCCAAAGGGGCAGCGG
CAGCTCTCAAGGACGCTAACCTTTCCCTCGAGGGCACAGTCGCCGGTCTG
AAGGACAGGGAAGCTGTCCTGGAGAGGGACCTCCGGGAGCTCGGGGACGA
GAGCGCCAGGATGCTCGACGAGGGAGGAACGTAGCCGAGAGGCATCTGTC
CTCCGTAAGCAAGCCACCGACCGGGAGGCCGCGCTAAAGAAGGACATCGA
CCAGGCCAAAGGGGCAGCGGCAGCTCTCAAGGACGCTAACCTTTCCCTCG
AGGGCACAGTCGCCGGTCTGAAGGACAGGGAAGCTGTCCTGGAGAGGGAC
CTCCGGGAGCTCGGGGACGAGAGCGCCAGGATGCTCGACGAG
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