mRNA_E-siliculosus-1a_F_contig1617.3534.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3534.1 vs. uniprot
Match: A0A6H5J7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D3_9PHAE) HSP 1 Score: 592 bits (1527), Expect = 1.830e-212 Identity = 316/340 (92.94%), Postives = 319/340 (93.82%), Query Frame = 1
Query: 1 MPVVLSSRWGIETVAVGTTCTDDGPLPLPFETSTTTAAGEAATWQDYCCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLARIRSTVLANARTSTSCRRGVPASDVGGGGDCGGVVAGTVNRGSDLPAATEVPAAAAREARVRVVALRWGEAEDMANARASPCNNHSGEGKICSSXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVGGIPADLLALPTASTEDPGSAAIRAVVMVRLPLPRDEQ 1020
MPVVLSSRWGIE VAVGT CTDDGPLPLPFETS TTAAGE T QDYCCDDR IGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHL RIRSTVLANARTSTSCRRGVPASDV GGDCGGVVAGTVNRGSDLPAAT VP AA REARV VVALRWGEAED+ANARASPCNNHSGEG+ CS XXXXXXXXXX AFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVG IPADLLA+PTASTEDPGSAAIRAVVMVRLPL RDEQ
Sbjct: 1 MPVVLSSRWGIEPVAVGTACTDDGPLPLPFETSATTAAGEVGTRQDYCCDDRGIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVLANARTSTSCRRGVPASDVDVGGDCGGVVAGTVNRGSDLPAATGVPTAATREARVCVVALRWGEAEDIANARASPCNNHSGEGRRCSXXXXXXXXXXXESWAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVGDIPADLLAMPTASTEDPGSAAIRAVVMVRLPLQRDEQ 340
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3534.1 vs. uniprot
Match: D8LGR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR1_ECTSI) HSP 1 Score: 538 bits (1387), Expect = 5.550e-191 Identity = 300/350 (85.71%), Postives = 307/350 (87.71%), Query Frame = 1
Query: 1 MPVVLSSRWGIETVAVGTTCTDDGPLPLPFETSTTTAAGEAATWQDYCCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLARIRSTVLANARTSTSCRRGVPASDVGGGGDCGGVVAGT----------VNRGSDLPAATEVPAAAAREARVRVVALRWGEAEDMANARASPCNNHSGEGKICSSXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVGGIPADLLALPTASTEDPGSAAIRAVVMVRLPLPRDEQ 1020
MPVVLSSRWGIE V VGT CTDDGPLPLPFETSTTTAAGEAAT QDYCCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPR+ N FTVRDKRVIELGGGTGALSVGLARS AASVTCTDLPCHLA I+STV+ANART+ SCRRGV SDVGGGG +RGSD PAATEVPAAAAREARVRVVALRWGE ED+ANARA P NNHSGE XXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLR+CEASFEVG IPADLLALPTASTEDPGSAAIRAVVMVRLPL RDEQ
Sbjct: 1 MPVVLSSRWGIEPVTVGTACTDDGPLPLPFETSTTTAAGEAATQQDYCCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPREGNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIQSTVVANARTTASCRRGVLGSDVGGGGXXXXXXXXXXXXXXXXXXXTSRGSDPPAATEVPAAAAREARVRVVALRWGEEEDIANARALPFNNHSGERXXXXXXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRTCEASFEVGDIPADLLALPTASTEDPGSAAIRAVVMVRLPLQRDEQ 350
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3534.1 vs. uniprot
Match: A0A7S2RJW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJW5_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 8.400e-10 Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 151 DRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPR---------KDNMFTVRDKRVIELGGGTGALSVGLARSGAA-SVTCTDLPCHLARIRSTVLANARTSTSCRR 441
D A D + ++TG +W+C+ VLW+++ D R K KR+IELG GTG LSV LA +G A V TDLPCH+ +IR+ + NA+ + RR
Sbjct: 350 DHADHTDAWPDPHDITGTVVWECSSVLWNMLEDSRMEVNGGAASKTLRGLTEGKRIIELGAGTGLLSVALASAGGAREVLATDLPCHMPQIRANLALNAKRCSDRRR 456
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3534.1 vs. uniprot
Match: A0A5J4YW68_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW68_PORPP) HSP 1 Score: 59.3 bits (142), Expect = 2.400e-6 Identity = 77/267 (28.84%), Postives = 101/267 (37.83%), Query Frame = 1
Query: 172 GDEEDMELTG------------RT---LWDCTQVLWDL------VADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLARIRSTVLANARTSTSCRRGVPASDVGGGGDCGGVVAGTVNRGSDLPAATEVP------AAAAREARVRVVALRWGEAEDMANARASPCNNHSGEGKICSSXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGT--KVILIYKERWPEREAEFLRS 885
G+EED E+ G RT L +C +V WD V + R VR + V+ELG GTG +S+ LA G V CTD L IR+ V N + + +R V G +L A++ P A + +V + AL W E A H I FD +V E LYWP L +L D + LR L+ L G IL + R P REA F S
Sbjct: 6 GEEEDAEVEGAEVCVLGVRVAVRTDAALLECGKV-WDANWALAEVLEQRVLRAAAVRQRCVLELGAGTGVMSIALAERGCL-VLCTDQTHVLPLIRANVARNGYSPDAAQRTV---------------------GDELAASSSEPLLFVKHGADSENKKVVIGALDWNE-RSYGALDALRTALHGTANAI----------------PFDAVVCGETLYWPGLSILDPDPLDGLRELLLFLLCTGRARSAILSFVSRNPSREARFFNS 232 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1617.3534.1 >prot_E-siliculosus-1a_F_contig1617.3534.1 ID=prot_E-siliculosus-1a_F_contig1617.3534.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=341bp MPVVLSSRWGIETVAVGTTCTDDGPLPLPFETSTTTAAGEAATWQDYCCDback to top mRNA from alignment at E-siliculosus-1a_F_contig1617:10626..13430- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1617.3534.1 ID=mRNA_E-siliculosus-1a_F_contig1617.3534.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2805bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1617:10626..13430- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1617:10626..13430- >mRNA_E-siliculosus-1a_F_contig1617.3534.1 ID=mRNA_E-siliculosus-1a_F_contig1617.3534.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2046bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1617:10626..13430- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |