mRNA_E-siliculosus-1a_F_contig1617.3533.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3533.1 vs. uniprot
Match: D8LGR2_ECTSI (Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR2_ECTSI) HSP 1 Score: 532 bits (1370), Expect = 1.440e-180 Identity = 282/294 (95.92%), Postives = 285/294 (96.94%), Query Frame = 1
Query: 403 MEEEDSGPIIREMRVQVRPRGEYGSRGARRIRRAGKVPGVVYSNSDNRGHSSRPGGGVGRPADDPILVKVDKIVLDGEVRRLNASFDNTVYDLVIEGETSSGDDAADEGIEVTVADPGAGGDRGQEEEEGASVGEGGVEXXXXXXXXXXPERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEHGMWNEVVCTIKGRKVFASQDSAGDDGDEIFVDDEA 1284
MEEEDSGPIIREMRVQVRPRGEYGSRGARRIRRAGKVPGVVYSNSDNRGHSSRPGGGVGRPADDPILVKVDKIVLD EVRRLNASFDNTVYDLVIEGETSSGDDAAD+GIEVTV DPGAGGDRG+EEEEG S GEGGVE XXXXXXXX PERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANE GMWNEVVCTIKGRKVFAS DSAGDD DE+FVDDEA
Sbjct: 1 MEEEDSGPIIREMRVQVRPRGEYGSRGARRIRRAGKVPGVVYSNSDNRGHSSRPGGGVGRPADDPILVKVDKIVLDREVRRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTVTDPGAGGDRGKEEEEGVSAGEGGVEGXXXXXXXX-PERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEPGMWNEVVCTIKGRKVFASGDSAGDDEDEVFVDDEA 293
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3533.1 vs. uniprot
Match: A0A397C844_9STRA (Ribosomal_TL5_C domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C844_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.540e-12 Identity = 69/255 (27.06%), Postives = 108/255 (42.35%), Query Frame = 1
Query: 457 PRGEYGSRGARRIRRAGKVPGVVYSNSDNRGHSSRPGGGVGRPADDPILVKVDKIVLDGEVRRLNASFDNTVYDLVIEGETSSGDDAADEGIEVTVADPGAGGDRGQEEEEGASVGEGGVEXXXXXXXXXXPERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEHGMWNEVVCTIKGRK 1221
PR + GSR ARR+R+ G +PG++Y N G +SR +LV ++++ + E R+L S N VY EVT D G P + VL + LHPV SVN++RYK GRK IP+ F+N + + ++G YI + + I E++P LY+D+ + G ++ + ++ PE + E VV TI G++
Sbjct: 32 PRLKDGSREARRLRKQGLLPGILYGEGVN-GDASR------------VLVSMNQVDFEREYRKLRTSMGNQVY-------------------EVTTGDGG-------------------------------PATK--VLLRDATLHPVTDIPQSVNFLRYKPGRKVHIPLDFLNQEGSPGLKRGGYINNV--YHEIPCTIASEVIPAKLYVDVNGMHVGERIYLENITFPEHVTPLVKPE-----SVVATIAGKR 214
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3533.1 vs. uniprot
Match: F0WKB2_9STRA (50S ribosomal protein L25 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WKB2_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.610e-9 Identity = 62/266 (23.31%), Postives = 108/266 (40.60%), Query Frame = 1
Query: 460 RGEYGSRGARRIRRAGKVPGVVYSNSDNRGHSSRPGGGVGRPADDP-ILVKVDKIVLDGEVRRLNASFDNTVYDLVIEGETSSGDDAADEGIEVTVADPGAGGDRGQEEEEGASVGEGGVEXXXXXXXXXXPERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEHGMWNEVVCTIKGRKVFASQDSAGDD 1254
R + GSR AR++R+ G +PG++Y G G DD +LV ++K + D R+L S DN V+ + ++ + L + + HPV L+VN+IRYK GRK IPI +IN + + ++G YI + + + + E VPK L +D+ + SK + + P+G++ ++ +KGR++ ++A D+
Sbjct: 44 RTQDGSRAARKLRKKGYLPGLLY--------------GEGMNGDDTKVLVSLEKKLFDRLHRKLWTSIDNQVFKVQVKDQPPI-----------------------------------------------------LAIMRDVQFHPVTDIPLTVNFIRYKNGRKVSIPITYINEEGSPGIKRGGYINHI--YHEVECYINTEQVPKTLEIDVNGLDVDSKFFLETISFPDGVVPVVPA-----GTLLANLKGRRILTLPEAAEDE 235
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3533.1 vs. uniprot
Match: A0A3R6YZB1_9STRA (Ribosomal_TL5_C domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZB1_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 7.650e-8 Identity = 42/140 (30.00%), Postives = 72/140 (51.43%), Query Frame = 1
Query: 868 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGIL-LHRANEHGMWNEVVCTIKGRK--VFASQDSAGDDGDEIFVDD 1278
VL + LHPV SVN++RYK GRK IP+ F+N + + ++G YI + + I E +P L++D+ + G ++ + D+ PE + L +A VV TI G++ + ++ + +E+ VDD
Sbjct: 103 VLLRDATLHPVTDVPQSVNFLRYKPGRKVHIPLDFLNQESSPGLKRGGYINNV--YHEIPCTIASEAIPTKLFVDVNGMHVGQRIYLEDITFPEHVTPLVKAKA------VVATIAGKRGLIPKPEEPIVEVVEEVAVDD 234
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3533.1 vs. uniprot
Match: A0A485LRJ8_9STRA (Aste57867_24188 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRJ8_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 2.560e-7 Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 1
Query: 868 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGIL-LHRANEHGMWNEVVCTIKGRK 1221
VL LHPV L+VN++RYK GRK IP+ ++N++ + ++G YI ++ I E +P L++D+ + G ++ + ++ PEG+ L +A VV TI G++
Sbjct: 105 VLLRDVTLHPVTDVPLTVNFLRYKPGRKVHIPLDYLNTEGSPGLKRGGYINNVR--HDIPCTIASEEIPAKLFVDVNGMHVGERIYLENITFPEGVTPLVKAKS------VVATIAGKR 215
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3533.1 vs. uniprot
Match: A0A024G2B8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2B8_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 3.630e-7 Identity = 43/134 (32.09%), Postives = 68/134 (50.75%), Query Frame = 1
Query: 865 LVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEHGMWNEVVCTIKGRKVFASQDSAGDDGDEI 1266
L + + HPV L+VN+IRYK GRK IPI +IN + + ++G YI + + D VPK L +D+ + SK + + P+GI+ A G ++ IKGR++ A + DD +E+
Sbjct: 825 LAIMRDVQFHPVTDLPLTVNFIRYKHGRKVSIPITYINEEGSPGLKRGGYINHICHEVECYVNTD--QVPKTLEIDVNGLDVDSKFFLETISFPDGIV--PAVPAGT---LLANIKGRRIQALPEVLEDDEEEL 951
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3533.1 vs. uniprot
Match: A0A6G0XNP1_9STRA (Ribosomal_TL5_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNP1_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 3.060e-5 Identity = 35/120 (29.17%), Postives = 61/120 (50.83%), Query Frame = 1
Query: 868 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGI--LLHRANEHGMWNEVVCTIKGRK 1221
VL L PV L+VN++RYK GRK IP+ ++N + + ++G YI ++ I E +P LY+D+ + G ++ + ++ PE + L+ + VV TI G++
Sbjct: 109 VLLRDVTLDPVTDVPLTVNFLRYKPGRKVYIPLDYLNMEGSPGLKRGGYINNVR--HEIPCTISSEEIPAKLYVDVNGMHVGERIYLENITFPEHVKPLIKEKS-------VVATIAGKR 219 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1617.3533.1 >prot_E-siliculosus-1a_F_contig1617.3533.1 ID=prot_E-siliculosus-1a_F_contig1617.3533.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3533.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=404bp MLCRLATAASRRAPAHPLQQQQQQQALLATASLVVRGRPSSGAAATTATTback to top mRNA from alignment at E-siliculosus-1a_F_contig1617:3792..10562+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1617.3533.1 ID=mRNA_E-siliculosus-1a_F_contig1617.3533.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3533.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6771bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1617:3792..10562+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1617:3792..10562+ >mRNA_E-siliculosus-1a_F_contig1617.3533.1 ID=mRNA_E-siliculosus-1a_F_contig1617.3533.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3533.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2424bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1617:3792..10562+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |