mRNA_E-siliculosus-1a_F_contig1615.3527.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1615.3527.1
Unique NamemRNA_E-siliculosus-1a_F_contig1615.3527.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: D7FKT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT2_ECTSI)

HSP 1 Score: 744 bits (1921), Expect = 2.420e-264
Identity = 505/545 (92.66%), Postives = 509/545 (93.39%), Query Frame = 2 
Query:    2 KGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYQRSRRMSKEKYIAGVGAGGEXXXXXXX-RQNMDRGASGNFESDXXXXXXX-GVFVTEAGVSERELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSLANGNGSGTNGEMSDPQSPLSRGQPPGQPQASVSGRTAPASGGGLQGYQPAAPSSDGRGREDPSQRSQQRQQHAHAQPPRGRSMSSDSPERRGGPASGTAGXXXXXXXXXXXXEAPAHKRQRSKSRSGRLVSQLRGIVGAGKGKSARRGGGSGALVMNGRGGHSLSDDDEEDSFEDEEWDVREQQHTAGNXXXXXXXXXXXXXXXXGMVTAASRAAQLVETREASRGHRRVSSATATMGAPIGNNTNLENRRSPPGSMSNLRAXXXXXXXXXXXXXXXATGSRLPRVPPAIPLSGSRGAGVGRGASGRGSALKPPAPRNSE 1630
            KGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKL+HIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDY RSRRMSKEKYIAGVG GGE XXXXXX RQNMDRGASGNFES XXXXXXX GVFVTEAGVSERELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RKSL NGNGSGTNGEMSDPQSPL+RGQP  Q QA VSGRTAPASGGGLQGYQPAAPSSDGRGREDPSQRSQQRQQ AHAQP RGRSMSSDSPERRGGPASGTAG          X EAPAHKRQRSKSRSGRLVSQLRGIVGAGKGKSARRGGGSGALVMNGRGGHSLSDDDEEDSFEDEEWDVREQQHTAGNXXXXXXXXXXXXXX  G+VTAASRAAQLVE REASRGHRRVSSATATMG PIGNNTNLENRRSPPGSMSNLRA XXXXXXXXX     ATGSRLPRVPPA+PLSGSRGAGVGRGASGRGSALKPPAPRNSE
Sbjct:   97 KGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLKHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYHRSRRMSKEKYIAGVGTGGEGXXXXXXXRQNMDRGASGNFESXXXXXXXXXGVFVTEAGVSERELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRKSLTNGNGSGTNGEMSDPQSPLARGQPTSQAQALVSGRTAPASGGGLQGYQPAAPSSDGRGREDPSQRSQQRQQ-AHAQP-RGRSMSSDSPERRGGPASGTAGGGAAERHVGGXGEAPAHKRQRSKSRSGRLVSQLRGIVGAGKGKSARRGGGSGALVMNGRGGHSLSDDDEEDSFEDEEWDVREQQHTAGNXXXXXXXXXXXXXX--GVVTAASRAAQLVEAREASRGHRRVSSATATMGVPIGNNTNLENRRSPPGSMSNLRAAXXXXXXXXX-----ATGSRLPRVPPAMPLSGSRGAGVGRGASGRGSALKPPAPRNSE 632
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BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: A0A6H5KD68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD68_9PHAE)

HSP 1 Score: 710 bits (1832), Expect = 1.930e-235
Identity = 475/550 (86.36%), Postives = 485/550 (88.18%), Query Frame = 2 
Query:    2 KGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYQRSRRMSKEKYIAGVGAGGEXXXXXXXRQNMDRGASGNFESDXXXXXXXGVFVTEAGVSERELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSLANGNGSGTNGEMSDPQSPLSRGQPPGQPQASVSGRTAPASGGGLQGYQPAAPSSDGRGREDPSQRSQQRQQHAHAQPPRGRSMSSDSPERRGGPASGTAGXXXXXXXXXXXXEAPAHKRQRSKSRSGRLVSQLRGIVGAGKGKSARRGGGSGALVMNGRGGHSLSDDDEEDSFEDEEWDVREQQH-------TAGNXXXXXXXXXXXXXXXXGMVTAASRAAQLVETREASRGHRRVSSATATMGAPIGNNTNLENRRSPPGSMSNLRAXXXXXXXXXXXXXXXATGSRLPRVPPAIPLSGSRGAGVGRGASGRGSALKPPAPRNSE 1630
            KGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYQRSRRMSKEKY+AGV AGGEXXXXXXXRQNMDRG SGNFESDXXXXXXX VFVTEAGVSER  XXXXXXXXXXXXXXXXXXXXXXX                R SL NG  SGTNGEMSDPQSPL+RGQPPGQPQASVS RTAPASGGGLQGYQPAAPSSDGRGRED SQ+SQQRQQHA  QPPRGRSMS DSPERRGGPASGT G            EAPAH+RQRSKSRSGRLVSQL+GIVGAGKGKSARRGG SGAL+MNGRGGHSLSD    DSFEDEEWDVR+Q         TAGNXXXXXXXXXXXXXXXXG+VTAASRAAQL E REASR HRRVSSATATMGAP+GNNTNLENRRSPPGSMSNL A XXXXXXXXXXX   ATGSRLPRVPPA+PLSGSRGAGVGRGASGRGSALKPPAPRNSE
Sbjct: 1357 KGVGSSMFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYQRSRRMSKEKYVAGVRAGGEXXXXXXXRQNMDRGVSGNFESDXXXXXXXXVFVTEAGVSERXXXXXXXXXXXXXXXXXXXXXXXXXGDMSDEGTTLASSPRRRSSLTNG--SGTNGEMSDPQSPLARGQPPGQPQASVSARTAPASGGGLQGYQPAAPSSDGRGREDLSQKSQQRQQHA--QPPRGRSMSRDSPERRGGPASGTEGGGTAERHVGGAGEAPAHQRQRSKSRSGRLVSQLKGIVGAGKGKSARRGGSSGALMMNGRGGHSLSDXXXXDSFEDEEWDVRQQXXXXXXXXXTAGNXXXXXXXXXXXXXXXXGVVTAASRAAQLAEAREASREHRRVSSATATMGAPMGNNTNLENRRSPPGSMSNLGAAXXXXXXXXXXX---ATGSRLPRVPPAMPLSGSRGAGVGRGASGRGSALKPPAPRNSE 1899
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BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: UPI000644BE56 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BE56)

HSP 1 Score: 75.5 bits (184), Expect = 7.620e-11
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 2 
Query:   86 NKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYQRSRRMSK 376
            +K  + TVW++ ++P K+  I+P  E+LS    +  RL   +SL   P +GFPVK  +P++ T+ A VTF N+    +D   F +PSD+ +++++ K
Sbjct:  356 HKNFEGTVWISQEFPRKITDILPIFEVLSPTHKLFGRLSDFISLK-FPSDGFPVKFDIPVLPTITATVTFNNYVEKEVDKCQFELPSDFVKTKQLLK 451
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BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: A0A1R2APQ5_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2APQ5_9CILI)

HSP 1 Score: 70.9 bits (172), Expect = 3.010e-9
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 2 
Query:   68 KVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQE-GFPVKVSVPLMMTVKAVVTFENFRSDGIDASNF 334
            K+ +  NK +KA +W A D+P+K+  +MP L++L+     A R    LS   +    GFP+K  +PLM+TV A+V F+  +++GI+ S F
Sbjct:  369 KLEKNSNKHIKANLWCAEDFPIKIADLMPLLDLLASVSQKAKRFHEFLSSNQMFYNIGFPLKAKIPLMLTVTALVAFKELKTEGIEDSEF 458
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BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: F4Q3Y2_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q3Y2_CAVFA)

HSP 1 Score: 69.3 bits (168), Expect = 8.430e-9
Identity = 32/95 (33.68%), Postives = 58/95 (61.05%), Query Frame = 2 
Query:   86 NKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYQRSRRM 370
            +K  +  VW+++++P K+  ++P  E+L+  + + +RL   +SL   P EGFPVK+  P++ T+ A VTF N+    ID  +F IP D+ + + +
Sbjct:  418 HKNFQGCVWISNEFPRKITDLLPIFEVLTPTNKLFSRLSEFISLK-FPMEGFPVKLDFPVVPTITATVTFNNYIEKEIDPQHFEIPVDFIKKKDL 511
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BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: A0A1R2BVI1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BVI1_9CILI)

HSP 1 Score: 68.9 bits (167), Expect = 1.300e-8
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 2 
Query:   68 KVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQE-GFPVKVSVPLMMTVKAVVTFENFRSDGIDASNF 334
            K+ +  NK +KA +W A ++P+K+  +MP L++L+     A R    LS   +    GFP+K  +PLM+TV A++ F+  R +GI+ S F
Sbjct:  414 KLEKNTNKHIKANLWCAENFPIKITDLMPLLDLLASVSQKAKRFHEFLSSNQMFYNIGFPLKAKIPLMLTVTALIAFKELRIEGIEDSEF 503
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: A0A1J1IKR7_9DIPT (CLUMA_CG013633, isoform A (Fragment) n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1IKR7_9DIPT)

HSP 1 Score: 68.6 bits (166), Expect = 2.700e-8
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 2 
Query:   50 PDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFR-SDGIDASNFVIPSDY 352
            P L  D V ++  K +KAT+ M+ D+PL +  ++  LEI++     A +LR  +SL  +P+ GFP+KV +PL+ TV A +TF++F   D I +  F IP+DY
Sbjct: 2353 PTLGRDLVFKKSQKTLKATIAMSQDFPLSIDILLNVLEIIAPFKHFA-KLRDFVSLK-LPK-GFPIKVDIPLVPTVSAKITFQDFEFRDDIQSDLFEIPADY 2451
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: A0A8J5EZS4_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5EZS4_ZINOF)

HSP 1 Score: 67.4 bits (163), Expect = 4.120e-8
Identity = 38/122 (31.15%), Postives = 68/122 (55.74%), Query Frame = 2 
Query:   41 KNNPDLNE-DKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGIDASNFVIPSDYQRSRRMSKEKYIAGVGA 403
            K    LNE +K   +  K ++  +W+  D+PLK   ++P L+IL+ +     RLR +L+   +PQ  FPVK+++P++ T++ +VTF  F  + + +  F  P       + +K K I G+G+
Sbjct:  445 KQKSSLNESNKRESEFKKGLRPILWLTPDFPLKTSELLPLLDILANKVKAVRRLRELLT-TKLPQGTFPVKLAIPIIPTIRVLVTFTKFE-ELLQSDEFATPPSSPTHFQENKAKEIEGLGS 564
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BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: D3AYY2_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AYY2_POLPP)

HSP 1 Score: 67.0 bits (162), Expect = 4.330e-8
Identity = 30/97 (30.93%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:   86 NKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENF-RSDGIDASNFVIPSDYQRSRRMS 373
            +K  + T+W++ ++P K+  ++P  E+L+  + + +RL   +SL   P +GFPVK+  P++ T+ A VTF+N+   + I    F +P D+ + +R++
Sbjct:  397 SKNFEGTIWISDEFPRKITDLLPIFEVLTPTNKLFSRLNEFVSLK-FPSDGFPVKLDFPVVPTITATVTFQNYVEREDIKPDLFEVPRDFVKKKRLT 492
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Match: A0A1S2XWF0_CICAR (ankyrin repeat domain-containing protein 13C n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XWF0_CICAR)

HSP 1 Score: 67.0 bits (162), Expect = 5.520e-8
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = 2 
Query:   59 NEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENF 304
            NE K   +  K V+  +W+  D+PLK   ++P L+IL+ +     RLR +L+   +PQ  FPVKV++P++ T++ +VTF  F
Sbjct:  465 NESKSESEFKKGVRPVLWLTQDFPLKTDELLPVLDILANKVKAIRRLRELLT-TKLPQGTFPVKVAIPIVPTIRVIVTFTKF 545
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1615.3527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKT2_ECTSI2.420e-26492.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD68_9PHAE1.930e-23586.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000644BE567.620e-1135.05hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1R2APQ5_9CILI3.010e-937.78Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
F4Q3Y2_CAVFA8.430e-933.68Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A1R2BVI1_9CILI1.300e-836.67Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1J1IKR7_9DIPT2.700e-840.20CLUMA_CG013633, isoform A (Fragment) n=1 Tax=Cluni... [more]
A0A8J5EZS4_ZINOF4.120e-831.15Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
D3AYY2_POLPP4.330e-830.93Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A1S2XWF0_CICAR5.520e-837.80ankyrin repeat domain-containing protein 13C n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1615contigE-siliculosus-1a_F_contig1615:417..5140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1614
Model size1633
Exons6
Ec32 orthologEc-17_001290.2
Ec32 ortholog descriptionAnkyrin repeat domain-containing protein 13
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
Ec32 orthologEc-17_001290.1
EggNOG OGsKOG0522@1,KOG0522@2759
EggNOG free text desc.protein retention in ER lumen
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006621,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0010941,GO:0012505,GO:0019222,GO:0031323,GO:0032507,GO:0033036,GO:0033365,GO:0034613,GO:0035437,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0048471,GO:0050789,GO:0050794,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0072595,GO:2000209
KEGG koko:K21437
Seed eggNOG ortholog2880.D7FKT2
Seed ortholog evalue3.6e-211
Seed ortholog score741.1
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928130.1314454-UTR-E-siliculosus-1a_F_contig1615:416..4351622928130.1314454-UTR-E-siliculosus-1a_F_contig1615:416..435Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1615 417..435 +
1696318816.316262-UTR-E-siliculosus-1a_F_contig1615:416..4351696318816.316262-UTR-E-siliculosus-1a_F_contig1615:416..435Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1615 417..435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928130.149835-CDS-E-siliculosus-1a_F_contig1615:435..4861622928130.149835-CDS-E-siliculosus-1a_F_contig1615:435..486Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 436..486 +
1696318816.3257556-CDS-E-siliculosus-1a_F_contig1615:435..4861696318816.3257556-CDS-E-siliculosus-1a_F_contig1615:435..486Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 436..486 +
1622928130.165268-CDS-E-siliculosus-1a_F_contig1615:1424..15321622928130.165268-CDS-E-siliculosus-1a_F_contig1615:1424..1532Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 1425..1532 +
1696318816.3357265-CDS-E-siliculosus-1a_F_contig1615:1424..15321696318816.3357265-CDS-E-siliculosus-1a_F_contig1615:1424..1532Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 1425..1532 +
1622928130.190002-CDS-E-siliculosus-1a_F_contig1615:2115..21871622928130.190002-CDS-E-siliculosus-1a_F_contig1615:2115..2187Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 2116..2187 +
1696318816.3462174-CDS-E-siliculosus-1a_F_contig1615:2115..21871696318816.3462174-CDS-E-siliculosus-1a_F_contig1615:2115..2187Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 2116..2187 +
1622928130.2035844-CDS-E-siliculosus-1a_F_contig1615:2943..32791622928130.2035844-CDS-E-siliculosus-1a_F_contig1615:2943..3279Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 2944..3279 +
1696318816.359475-CDS-E-siliculosus-1a_F_contig1615:2943..32791696318816.359475-CDS-E-siliculosus-1a_F_contig1615:2943..3279Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 2944..3279 +
1622928130.2182398-CDS-E-siliculosus-1a_F_contig1615:3744..39151622928130.2182398-CDS-E-siliculosus-1a_F_contig1615:3744..3915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 3745..3915 +
1696318816.368413-CDS-E-siliculosus-1a_F_contig1615:3744..39151696318816.368413-CDS-E-siliculosus-1a_F_contig1615:3744..3915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 3745..3915 +
1622928130.229035-CDS-E-siliculosus-1a_F_contig1615:4264..51401622928130.229035-CDS-E-siliculosus-1a_F_contig1615:4264..5140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 4265..5140 +
1696318816.3756943-CDS-E-siliculosus-1a_F_contig1615:4264..51401696318816.3756943-CDS-E-siliculosus-1a_F_contig1615:4264..5140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1615 4265..5140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1615.3527.1prot_E-siliculosus-1a_F_contig1615.3527.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1615 436..5140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1615.3527.1

>prot_E-siliculosus-1a_F_contig1615.3527.1 ID=prot_E-siliculosus-1a_F_contig1615.3527.1|Name=mRNA_E-siliculosus-1a_F_contig1615.3527.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=538bp
MFQKPFWKNNPDLNEDKVHRQINKQVKATVWMAHDYPLKLRHIMPALEIL
SVRDDMAARLRSVLSLAGIPQEGFPVKVSVPLMMTVKAVVTFENFRSDGI
DASNFVIPSDYQRSRRMSKEKYIAGVGAGGEGGGGGGGRQNMDRGASGNF
ESDDEEEEEEGVFVTEAGVSERELLRRRAASRNAFDDDEEDDSDFDDDDM
SDEGTTPASSPRRRKSLANGNGSGTNGEMSDPQSPLSRGQPPGQPQASVS
GRTAPASGGGLQGYQPAAPSSDGRGREDPSQRSQQRQQHAHAQPPRGRSM
SSDSPERRGGPASGTAGGGAAERHAGGGGEAPAHKRQRSKSRSGRLVSQL
RGIVGAGKGKSARRGGGSGALVMNGRGGHSLSDDDEEDSFEDEEWDVREQ
QHTAGNGNAHGHGHGGGGGGSGGMVTAASRAAQLVETREASRGHRRVSSA
TATMGAPIGNNTNLENRRSPPGSMSNLRAAAEQQQQQQQQQQQQATGSRL
PRVPPAIPLSGSRGAGVGRGASGRGSALKPPAPRNSE*
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mRNA from alignment at E-siliculosus-1a_F_contig1615:417..5140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1615.3527.1 ID=mRNA_E-siliculosus-1a_F_contig1615.3527.1|Name=mRNA_E-siliculosus-1a_F_contig1615.3527.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4724bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1615:417..5140+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAGGGCGTCGGGTCGAGCATGTTCCAGAAGCCGTTCTGGAAGAACAACC
CGGACCTTAACGAAGACAAGGTGAGTCGTGATAGGTTGGTTATTGGTTAT
TGGTTACCCGGGGCAGGGTTAGCCGGAGGTAGGGTGGGTTTTTCGAGTGA
GTTAGCCGAGCGTGTTGGTGTGCTAGCTGTTGGGGTCGAGCGTACTCTTT
TCGCGGTGTTTTGTGTCTTTGTTGTGGCCGTGCGAGACCTGTAGAAGGCG
TCGCCACTTACAAGAGCCCGGTCGTTTCGAAGTCTAGGCTCGAATATCGA
ATATTTACCATAATAACAGGTCCTCTTGTTATAGCATCCTACACCTCTGT
CGTCGATGTTGGACACCCAATAGAGGAAATAGGACATGAGCCTCCGCGGG
AAAATAATAAGAGCTTTAAAGGTGTTGGTGCTCGGGACAGGTAGCTAGAG
TCTTTCTGTGATTGCGCGGTCAGTGGTGTTTGCGTTTGGTGATGCCGTCA
TTACGAGTCACATCGAATGGAAGACATGTGTGTGTTCCTAGGGGGGGTGT
CGAGCTTTCCGCCGGGTGTGCTTTGCGTGCTGTCATGTGTTACGTTTTTT
TTGTTTTGCGCGCTGGTGTTATTGGAACGATACCGGTGTGTGGCCGGGTG
AGATTTACTGGCAAGGAAGAAGCACAGGTGCCAACACATGTGGCTGTGTA
CATATTGTGCTCTTGACTTCGTTAACACGTGGGCCTTTGTTGTTGTCATG
TCAGTCAAAAGATGCTGTCGCTGTGGCCAGGCGTTTTCTCTTGTTGTCAA
CCAGTCAATCAATATCTCAAGATCAGGATGTCATTGTTGTTCGTTGGTGT
TGCTGCTCCTGTGTCGTTTTTCCTGCTGTAATTATCGTGGAGAAAAGCGT
GTTAAATTTGACAGGCCGTATACAGCAGCTTCCTTTGGTCTATCTCGGGG
AAGCGTGAACCTAACCCGCCCTTTTGGCGTGTCTACTACGGCTATGATAT
CTCAACAGGTACACCGTCAGATCAACAAGCAGGTGAAGGCGACTGTGTGG
ATGGCGCACGACTACCCCCTCAAGCTCAGGCACATCATGCCGGCTCTGGA
GATCCTTTCCGTCAGGGTGAGTTGGCCGTTGACGCTGCTGTTGCTGTGTC
CACATCAGTTTCGCCCGTCCGTCAGGTTGAGTTAGCCGTTGCCGCTTGTG
TGTTGTTGCTGTCTCCACAACAGTGTCGGTCAGGGTGAAAGTTACCTGTA
TCCACGGCGATAGTTTGGTGTTGGTTTGTTTCATCCCAGGCTGACCCCGA
CACGCGGGAGACGAATTGAATCGCGCATACGCACCCAAGGTTGAGGAGAT
GTCATCATCATCATCATCATCATCATCTTCTCAACCCTGTTGAGGGTCGT
TTCCCTGTTTCAAGGTCGTTTTCCGAGAGTTGGAATCAACCCGCGCGAAG
TAAACAAACACCAAATGCTTCATCTTAGCCAGTTCCACGCAACCGCTCTC
TCTGAAACATGCTTGTCCCTCCGGACCCACACTAAGCCTGCCTCTACTCA
TGTAGACTTTCTAGAACAAATTGCCATCTACTAGTAGTTGGAGAGCAATT
CCAATCCCCCACTGCAACCTACGCCCGTCGTTCTACGCTTACCCCGCCTA
CTCCTCCCGCCTACCGTGGCTCTTACCCGTTGCCTGCCGCGTTTTACAGG
ACGACATGGCCGCAAGGCTTCGCTCCGTTCTCTCCCTCGCCGGGATCCCT
CAGGAAGGATTCCCTGTGAAGGTGGGTCGTGTGTTTGTGTGATCTATGAT
GTATATACAATACCTGTACGGTAGTCGTCCGTCGCCGCCTTATGGACGCA
CGTGGTCTTAGTTCAAAACAATTTGCGCTTAAATTAAACGGGGGAACTGT
CCTTTGTTTTCTCCTACGGCGGGGCCATCGTGCTTCTGTTATGGCTTTGT
CCTTAAACCAGCATGTGTCGTTAGTTCTGGTGTGTGCTTTGAACCGAGGA
CGGCTGTGTTCCGTCTCCGGCGATAAATAAGTCATGATGATATCGGTGAA
ATAAAGGTTTTCCGCCGAAAGGCGCCGTGGTTATCTATCTACCCCCTAAG
TCGGCTGCGTCTTACGGGGCGTCCCCCCACCCCCAAATGGAAACCACGGC
AAAAACAGCAATAAAAAAGCCGCCCGAATATTGGCGATGTAGCCCGTCAC
CGAATAGAAGGAAGATGATGTTCCCTATCCTTCTCCAAAGGGAGTAGTGG
AATAAGCATGGTATACGACTATTGTATATTGAGCAACTTTTCATGAGTAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCGCGTCTAGCCNNNNNNNNNNTCC
CTTTCCTTCCCCAAGGGGGGGGGGGGAATAAGCTTTGTTTCCGACTTTTT
TTTTTTGAGGAACTTTTCCTGAGGCCCCCCCCCCCCCCCCCCCCCCGTCC
TACCGTTGCGCGGCGCCCCAAAAACAGGTTTCCGTGCCCCTGATGATGAC
CGTGAAAGCAGTCGTCACCTTCGAGAACTTCAGGTCCGACGGCATCGATG
CCAGCAACTTCGTGATCCCGAGCGACTATCAGCGGTCACGCCGCATGTCG
AAGGAGAAGTATATCGCCGGTGTTGGGGCCGGAGGGGAAGGCGGCGGCGG
GGGGGGCGGGCGGCAGAACATGGACAGGGGTGCCTCGGGCAATTTCGAGT
CGGACGACGAGGAGGAAGAGGAGGAAGGCGTGTTTGTGACGGAGGCCGGT
GTCAGCGAGAGGGAGCTGTTGAGGAGGCGGGCGGCGTCTCGCAACGCGTT
CGATGACGACGAGGTGTGCTGTTGTTGTTGTTGTTGTTGTCTTCGCAATA
TGAACCGTTCCCTTGGTGCTTCCTTGACTTGATACACATCACCACGTCGT
GATCCGTGAATCATGACCCGCGCCAAGCCAAAGGCACTATTTAAGGTTTC
GAGAAAGGCACCTCACCTGCTGCCGAGCCTGTTGTTGTGCTTGTTTCGTG
TCTTTGTTTTCTCACGTTGTCCTAATGCAGCGATGGCAATACACGCGGTG
AAGTTGCCCTACTTTAGAGTGATGTTTTACTTCAGCGCCTCTCACCCCGC
CATATAAGTTGTTTGTTTTGTGTTGTCCTCTTGTTTTGTGTTGTCCCTTA
ATCCCAACCAACCGTATGGTATTTTTAAGCCCATGGTATAATAGAGTACT
CGCATGCTCGTTGCCCACCCGCCAATGTCATCGTTCGTCGCAATGCCCTC
CCTTCTTTATATTTTTCTTGACCCTCAGGAGGACGATTCTGATTTCGATG
ACGACGACATGTCCGACGAGGGAACGACGCCGGCATCCTCACCCCGACGA
AGAAAGAGCTTGGCAAACGGCAACGGCAGCGGCACCAACGGCGAGATGTC
AGACCCTCAGTCTCCCCTCTCGAGAGGGCAGCCACCGGGTCAACCGCAGG
TGTGTGTGTGATGTGTGTGAGAGAGACAAACATAGAGAGTAGATAGACAG
AGAAAGACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAG
AAACGGACGGACAGACAGACAGAGGGAGAGGGAGAGGGAGAGGTTAAATA
GCCGGGGTTCGTTTTTTCTTCTGGTTTTATGTTTTATACTTGGGTGGTTA
TGCAATTCGTTTGTCCCTCCCTTGCCGGCCCGATGTTGTATCTTGAAGCG
AGCACAAATGACTCGGTTTTACCAAATGTAACAATAGCTTGCGCCTGAAG
CTTTAACAAATGTTGCCACCCCCCCCCCCCCGGTCCATCGGATCTCAGGC
CTCAGTGTCGGGGAGAACAGCACCAGCCTCCGGCGGCGGCCTTCAGGGTT
ATCAGCCGGCCGCCCCGTCGTCTGATGGGAGAGGTAGAGAGGACCCGTCG
CAGAGATCACAGCAGCGGCAACAACACGCTCACGCTCAACCTCCTCGTGG
CCGATCCATGAGCAGCGACAGCCCGGAGCGACGAGGGGGGCCCGCGAGTG
GGACCGCAGGGGGGGGGGCAGCAGAACGGCACGCCGGGGGGGGTGGTGAA
GCTCCCGCCCACAAGCGGCAGCGAAGCAAGTCTCGGAGCGGCAGGCTGGT
GTCCCAGCTCAGGGGCATCGTCGGGGCCGGGAAGGGCAAGTCCGCGCGGA
GGGGCGGGGGCTCCGGCGCATTGGTGATGAACGGCAGGGGGGGGCACTCC
CTCAGCGACGACGACGAGGAAGACTCGTTCGAGGACGAGGAGTGGGACGT
CCGAGAGCAGCAGCATACCGCGGGCAACGGCAACGCTCACGGCCACGGCC
ACGGCGGCGGCGGCGGCGGCAGCGGGGGGATGGTGACAGCGGCGTCTCGG
GCGGCCCAGCTGGTAGAGACGCGAGAGGCTTCCCGGGGACATCGGCGAGT
TTCGTCCGCTACGGCGACTATGGGAGCGCCGATCGGAAACAACACGAACT
TGGAGAACCGGAGATCGCCACCGGGGTCCATGTCTAATCTTAGAGCAGCG
GCGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGACGGG
GTCGCGATTGCCGCGGGTCCCGCCAGCGATACCGCTAAGCGGCAGCAGGG
GCGCGGGTGTCGGCAGGGGCGCCAGCGGGAGAGGGTCCGCGCTGAAGCCG
CCAGCGCCGCGAAATTCGGAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1615:417..5140+

>mRNA_E-siliculosus-1a_F_contig1615.3527.1 ID=mRNA_E-siliculosus-1a_F_contig1615.3527.1|Name=mRNA_E-siliculosus-1a_F_contig1615.3527.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1615:417..5140+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCCAGAAGCCGTTCTGGAAGAACAACCCGGACCTTAACGAAGACAA
GATGTTCCAGAAGCCGTTCTGGAAGAACAACCCGGACCTTAACGAAGACA
AGGTACACCGTCAGATCAACAAGCAGGTGAAGGCGACTGTGTGGATGGCG
CACGACTACCCCCTCAAGCTCAGGCACATCATGCCGGCTCTGGAGATCCT
TTCCGTCAGGGTACACCGTCAGATCAACAAGCAGGTGAAGGCGACTGTGT
GGATGGCGCACGACTACCCCCTCAAGCTCAGGCACATCATGCCGGCTCTG
GAGATCCTTTCCGTCAGGGACGACATGGCCGCAAGGCTTCGCTCCGTTCT
CTCCCTCGCCGGGATCCCTCAGGAAGGATTCCCTGTGAAGGACGACATGG
CCGCAAGGCTTCGCTCCGTTCTCTCCCTCGCCGGGATCCCTCAGGAAGGA
TTCCCTGTGAAGGTTTCCGTGCCCCTGATGATGACCGTGAAAGCAGTCGT
CACCTTCGAGAACTTCAGGTCCGACGGCATCGATGCCAGCAACTTCGTGA
TCCCGAGCGACTATCAGCGGTCACGCCGCATGTCGAAGGAGAAGTATATC
GCCGGTGTTGGGGCCGGAGGGGAAGGCGGCGGCGGGGGGGGCGGGCGGCA
GAACATGGACAGGGGTGCCTCGGGCAATTTCGAGTCGGACGACGAGGAGG
AAGAGGAGGAAGGCGTGTTTGTGACGGAGGCCGGTGTCAGCGAGAGGGAG
CTGTTGAGGAGGCGGGCGGCGTCTCGCAACGCGTTCGATGACGACGAGGT
TTCCGTGCCCCTGATGATGACCGTGAAAGCAGTCGTCACCTTCGAGAACT
TCAGGTCCGACGGCATCGATGCCAGCAACTTCGTGATCCCGAGCGACTAT
CAGCGGTCACGCCGCATGTCGAAGGAGAAGTATATCGCCGGTGTTGGGGC
CGGAGGGGAAGGCGGCGGCGGGGGGGGCGGGCGGCAGAACATGGACAGGG
GTGCCTCGGGCAATTTCGAGTCGGACGACGAGGAGGAAGAGGAGGAAGGC
GTGTTTGTGACGGAGGCCGGTGTCAGCGAGAGGGAGCTGTTGAGGAGGCG
GGCGGCGTCTCGCAACGCGTTCGATGACGACGAGGAGGACGATTCTGATT
TCGATGACGACGACATGTCCGACGAGGGAACGACGCCGGCATCCTCACCC
CGACGAAGAAAGAGCTTGGCAAACGGCAACGGCAGCGGCACCAACGGCGA
GATGTCAGACCCTCAGTCTCCCCTCTCGAGAGGGCAGCCACCGGGTCAAC
CGCAGGAGGACGATTCTGATTTCGATGACGACGACATGTCCGACGAGGGA
ACGACGCCGGCATCCTCACCCCGACGAAGAAAGAGCTTGGCAAACGGCAA
CGGCAGCGGCACCAACGGCGAGATGTCAGACCCTCAGTCTCCCCTCTCGA
GAGGGCAGCCACCGGGTCAACCGCAGGCCTCAGTGTCGGGGAGAACAGCA
CCAGCCTCCGGCGGCGGCCTTCAGGGTTATCAGCCGGCCGCCCCGTCGTC
TGATGGGAGAGGTAGAGAGGACCCGTCGCAGAGATCACAGCAGCGGCAAC
AACACGCTCACGCTCAACCTCCTCGTGGCCGATCCATGAGCAGCGACAGC
CCGGAGCGACGAGGGGGGCCCGCGAGTGGGACCGCAGGGGGGGGGGCAGC
AGAACGGCACGCCGGGGGGGGTGGTGAAGCTCCCGCCCACAAGCGGCAGC
GAAGCAAGTCTCGGAGCGGCAGGCTGGTGTCCCAGCTCAGGGGCATCGTC
GGGGCCGGGAAGGGCAAGTCCGCGCGGAGGGGCGGGGGCTCCGGCGCATT
GGTGATGAACGGCAGGGGGGGGCACTCCCTCAGCGACGACGACGAGGAAG
ACTCGTTCGAGGACGAGGAGTGGGACGTCCGAGAGCAGCAGCATACCGCG
GGCAACGGCAACGCTCACGGCCACGGCCACGGCGGCGGCGGCGGCGGCAG
CGGGGGGATGGTGACAGCGGCGTCTCGGGCGGCCCAGCTGGTAGAGACGC
GAGAGGCTTCCCGGGGACATCGGCGAGTTTCGTCCGCTACGGCGACTATG
GGAGCGCCGATCGGAAACAACACGAACTTGGAGAACCGGAGATCGCCACC
GGGGTCCATGTCTAATCTTAGAGCAGCGGCGGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGGCGACGGGGTCGCGATTGCCGCGGGTCCCG
CCAGCGATACCGCTAAGCGGCAGCAGGGGCGCGGGTGTCGGCAGGGGCGC
CAGCGGGAGAGGGTCCGCGCTGAAGCCGCCAGCGCCGCGAAATTCGGAGT
GAGCCTCAGTGTCGGGGAGAACAGCACCAGCCTCCGGCGGCGGCCTTCAG
GGTTATCAGCCGGCCGCCCCGTCGTCTGATGGGAGAGGTAGAGAGGACCC
GTCGCAGAGATCACAGCAGCGGCAACAACACGCTCACGCTCAACCTCCTC
GTGGCCGATCCATGAGCAGCGACAGCCCGGAGCGACGAGGGGGGCCCGCG
AGTGGGACCGCAGGGGGGGGGGCAGCAGAACGGCACGCCGGGGGGGGTGG
TGAAGCTCCCGCCCACAAGCGGCAGCGAAGCAAGTCTCGGAGCGGCAGGC
TGGTGTCCCAGCTCAGGGGCATCGTCGGGGCCGGGAAGGGCAAGTCCGCG
CGGAGGGGCGGGGGCTCCGGCGCATTGGTGATGAACGGCAGGGGGGGGCA
CTCCCTCAGCGACGACGACGAGGAAGACTCGTTCGAGGACGAGGAGTGGG
ACGTCCGAGAGCAGCAGCATACCGCGGGCAACGGCAACGCTCACGGCCAC
GGCCACGGCGGCGGCGGCGGCGGCAGCGGGGGGATGGTGACAGCGGCGTC
TCGGGCGGCCCAGCTGGTAGAGACGCGAGAGGCTTCCCGGGGACATCGGC
GAGTTTCGTCCGCTACGGCGACTATGGGAGCGCCGATCGGAAACAACACG
AACTTGGAGAACCGGAGATCGCCACCGGGGTCCATGTCTAATCTTAGAGC
AGCGGCGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGA
CGGGGTCGCGATTGCCGCGGGTCCCGCCAGCGATACCGCTAAGCGGCAGC
AGGGGCGCGGGTGTCGGCAGGGGCGCCAGCGGGAGAGGGTCCGCGCTGAA
GCCGCCAGCGCCGCGAAATTCGGAGTGA
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