mRNA_E-siliculosus-1a_F_contig161.3503.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig161.3503.1
Unique NamemRNA_E-siliculosus-1a_F_contig161.3503.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: D7FNL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL2_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 3.720e-79
Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFKPAAQDGSATDKKES 434
            MHDFCLTIPYGMIVMFGGIIGFLAAGS+ASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKT+FKPAAQDGSATDKKES
Sbjct:    1 MHDFCLTIPYGMIVMFGGIIGFLAAGSKASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTSFKPAAQDGSATDKKES 131
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: A0A484E5N4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5N4_BRELC)

HSP 1 Score: 104 bits (259), Expect = 4.600e-23
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFKPAA 401
            M+DFCLTIPYGM++  GG+IG++++GS  SL AGG SGA L  +GY  Y EYK     S++W   SL++S  + VMMAKR+ +T    P+  +   +  M+ FY + + K +K ++K  A
Sbjct:    1 MYDFCLTIPYGMVLGLGGLIGYVSSGSTMSLTAGGLSGAFLSFVGYCSYNEYKQSPVTSKMWPAISLIVSAPLTVMMAKRYNETNHFFPAGLVAAYSAGMSIFYVWILTKKSKPHYKKKA 120
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: A0A3R7JYH8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JYH8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.820e-22
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFKPAA 401
            M+DFCLTIPYGM +  GG+IGF+++GS  SL+AGG SGA L  +GY  Y EY      S+LW   SL +S  + V+M +R++KT    P+  +   +  M  FY + + KT+K  +K  A
Sbjct:    1 MYDFCLTIPYGMTLGLGGLIGFVSSGSTTSLLAGGLSGAFLSFVGYCSYNEYTQSPVTSKLWPALSLAVSAPLTVVMGQRYQKTSAFFPAGIVAAYSAGMTLFYLWILTKTSKPQYKKKA 120
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: A0A0N7L897_PLAHL (Transmembrane protein 14c n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L897_PLAHL)

HSP 1 Score: 100 bits (250), Expect = 7.990e-22
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFKPAA 401
            M+DFCLTIPYGM++  GG+IGF+  GS  S+ AGG SGA+L  LGY  Y EYK     S+LW   SL +S  + + M  R+ KT    P+  L   +  M+ FY + + K +K  +K  A
Sbjct:    1 MYDFCLTIPYGMLLGVGGVIGFINTGSTMSVAAGGLSGAILSFLGYCSYNEYKQSPVTSKLWPGLSLAVSTALTITMGNRYNKTNAFFPAGFLAAYSAGMSIFYVWVLTKKSKPQYKKKA 120
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: D0NS92_PHYIT (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0NS92_PHYIT)

HSP 1 Score: 99.8 bits (247), Expect = 2.060e-21
Identity = 53/120 (44.17%), Postives = 71/120 (59.17%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFKPAA 401
            M+DFCLTIPYGM++  GG+IGF+ +GS  SL AGG SGA L  +GY  Y EY      S+LW   SL +S  + V+MA R+ KT    PS  +   +  M  FY + + K +K  +K  A
Sbjct:    1 MYDFCLTIPYGMLLGLGGLIGFVNSGSTMSLAAGGVSGAFLSFVGYCSYNEYTQSPVTSKLWPAISLAVSAPLTVVMANRYNKTNAFFPSGFVSAYSAGMTIFYVWILTKKSKPQYKKKA 120
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: H3GGS2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGS2_PHYRM)

HSP 1 Score: 99.4 bits (246), Expect = 2.830e-21
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFKPAA 401
            M+DFCLT+PYGM++  GG+IG++++GS  SL+AGG SGA L  +GY  Y EY      S+LW   SL ++  + V+M  R+  TG   P+  +   +  M  FY + + KT+K  +K  A
Sbjct:    1 MYDFCLTLPYGMLLGLGGVIGYVSSGSSTSLVAGGLSGAFLTFVGYCSYNEYTQSPVTSKLWPAVSLAVAAPLTVVMGNRYNNTGAFFPAGLVAASSAGMTVFYVWLLTKTSKPQYKKKA 120
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: A0A3M6VEJ4_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEJ4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.530e-20
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFK 392
            M+DFCLTIPYG+++  GG+ GF+++GS  SL+AGG SGA L  +GY  Y EY      S+LW   SL +S  + V+M  R+ KT +  PS    + +  M  FY + + K  K  +K
Sbjct:    1 MYDFCLTIPYGIVLGLGGLAGFMSSGSTMSLVAGGLSGAFLSFVGYCSYNEYTQSPVTSKLWPAVSLAVSAPLTVVMGNRYNKTNEFFPSGFTAVYSGGMTIFYLWILTKQNKPQYK 117
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: A0A2D4BIL0_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIL0_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 6.950e-20
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFK 392
            M+DFCLTIPYG+++  GG+IG++ +GS  S++AGG SG  L L+GY  Y EY      S+LW   SL +S  + V+M  RF+ TG   P+  +   +  M+ FY  ++    K  +K
Sbjct:   14 MYDFCLTIPYGVLLGIGGLIGYVNSGSATSIIAGGASGVFLTLVGYASYQEYTQSPVTSKLWPGLSLAVSAPLTVVMGLRFQNTGAFFPAGFVAATSAXMSLFYLAKLVSNPKPKYK 130
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: A0A5D6Y3Z3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3Z3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.330e-19
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMAKTTKTNFK 392
            M+DFCLTIPYGM++  GGIIG++ +GS  S +AGG SG  L  +GY  Y EY      S+LW   SL +S  +  +M  R++KTG   P+  +   +  M+ FY  ++  + K ++K
Sbjct:    1 MYDFCLTIPYGMLLGIGGIIGYVNSGSATSALAGGASGLFLTFVGYCSYNEYTQSPVTSKLWPALSLGVSGALTGVMGVRYQKTGAFFPAGFIAATSAAMSLFYIAKLVASPKPHYK 117
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Match: S8DYQ2_9LAMI (Uncharacterized protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DYQ2_9LAMI)

HSP 1 Score: 89.0 bits (219), Expect = 1.340e-17
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:   42 MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQMA 368
            MHDFC TIPYG++++ GG+ GF+  GS ASL  G G+GALL+L GY     +  K        + + +   + W+M  +R+ +TGKIMP+  +  L+ +MA FY Y++A
Sbjct:    1 MHDFCFTIPYGLLLVLGGVFGFVKKGSTASLAGGAGTGALLILAGYLSLQAFHKKRNSYSALILETGIAGLLTWIM-GQRYAETGKIMPAGMVAGLSFVMAVFYVYKLA 108
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig161.3503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNL2_ECTSI3.720e-7998.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A484E5N4_BRELC4.600e-2343.33Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3R7JYH8_9STRA5.820e-2243.33Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0N7L897_PLAHL7.990e-2243.33Transmembrane protein 14c n=1 Tax=Plasmopara halst... [more]
D0NS92_PHYIT2.060e-2144.17Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
H3GGS2_PHYRM2.830e-2140.83Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3M6VEJ4_9STRA3.530e-2041.88Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A2D4BIL0_PYTIN6.950e-2040.17Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A5D6Y3Z3_9STRA2.330e-1940.17Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
S8DYQ2_9LAMI1.340e-1741.28Uncharacterized protein n=1 Tax=Genlisea aurea Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig161contigE-siliculosus-1a_F_contig161:20438..25081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size396
Model size1579
Exons5
Ec32 orthologEc-01_005060.1
Ec32 ortholog descriptionUncharacterised protein family UPF0136, Transmembrane
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsKOG4267@1,KOG4267@2759
EggNOG free text desc.regulation of heme biosynthetic process
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0007275,GO:0008028,GO:0008150,GO:0008509,GO:0008514,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009555,GO:0009653,GO:0009664,GO:0009706,GO:0009832,GO:0009941,GO:0009987,GO:0010208,GO:0010876,GO:0010927,GO:0015075,GO:0015245,GO:0015318,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0022857,GO:0030198,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0032989,GO:0033036,GO:0034220,GO:0042170,GO:0042546,GO:0042592,GO:0043062,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046942,GO:0046943,GO:0048229,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0051179,GO:0051234,GO:0055085,GO:0055088,GO:0065007,GO:0065008,GO:0070726,GO:0071554,GO:0071555,GO:0071668,GO:0071669,GO:0071702,GO:0071840,GO:0085029,GO:0098656,GO:1902001,GO:1903825,GO:1905039
Seed eggNOG ortholog2880.D7FNL2
Seed ortholog evalue1.3e-64
Seed ortholog score252.3
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928125.8801303-UTR-E-siliculosus-1a_F_contig161:20437..204781622928125.8801303-UTR-E-siliculosus-1a_F_contig161:20437..20478Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig161 20438..20478 +
1696318814.2373128-UTR-E-siliculosus-1a_F_contig161:20437..204781696318814.2373128-UTR-E-siliculosus-1a_F_contig161:20437..20478Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig161 20438..20478 +
1622928126.009765-UTR-E-siliculosus-1a_F_contig161:23939..250811622928126.009765-UTR-E-siliculosus-1a_F_contig161:23939..25081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig161 23940..25081 +
1696318814.2926922-UTR-E-siliculosus-1a_F_contig161:23939..250811696318814.2926922-UTR-E-siliculosus-1a_F_contig161:23939..25081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig161 23940..25081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928125.8953607-CDS-E-siliculosus-1a_F_contig161:20478..205801622928125.8953607-CDS-E-siliculosus-1a_F_contig161:20478..20580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 20479..20580 +
1696318814.2482789-CDS-E-siliculosus-1a_F_contig161:20478..205801696318814.2482789-CDS-E-siliculosus-1a_F_contig161:20478..20580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 20479..20580 +
1622928125.9576375-CDS-E-siliculosus-1a_F_contig161:21280..213211622928125.9576375-CDS-E-siliculosus-1a_F_contig161:21280..21321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 21281..21321 +
1696318814.256922-CDS-E-siliculosus-1a_F_contig161:21280..213211696318814.256922-CDS-E-siliculosus-1a_F_contig161:21280..21321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 21281..21321 +
1622928125.9711487-CDS-E-siliculosus-1a_F_contig161:22585..226061622928125.9711487-CDS-E-siliculosus-1a_F_contig161:22585..22606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 22586..22606 +
1696318814.2656462-CDS-E-siliculosus-1a_F_contig161:22585..226061696318814.2656462-CDS-E-siliculosus-1a_F_contig161:22585..22606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 22586..22606 +
1622928125.987541-CDS-E-siliculosus-1a_F_contig161:23121..231591622928125.987541-CDS-E-siliculosus-1a_F_contig161:23121..23159Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 23122..23159 +
1696318814.274158-CDS-E-siliculosus-1a_F_contig161:23121..231591696318814.274158-CDS-E-siliculosus-1a_F_contig161:23121..23159Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 23122..23159 +
1622928125.9988935-CDS-E-siliculosus-1a_F_contig161:23745..239391622928125.9988935-CDS-E-siliculosus-1a_F_contig161:23745..23939Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 23746..23939 +
1696318814.2850418-CDS-E-siliculosus-1a_F_contig161:23745..239391696318814.2850418-CDS-E-siliculosus-1a_F_contig161:23745..23939Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig161 23746..23939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig161.3503.1prot_E-siliculosus-1a_F_contig161.3503.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig161 20479..23939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig161.3503.1

>prot_E-siliculosus-1a_F_contig161.3503.1 ID=prot_E-siliculosus-1a_F_contig161.3503.1|Name=mRNA_E-siliculosus-1a_F_contig161.3503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=132bp
MHDFCLTIPYGMIVMFGGIIGFLAAGSRASLMAGGGSGALLMLLGYGGYM
EYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLM
AFFYAYQMAKTTKTNFKPAAQDGSATDKKES*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig161:20438..25081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig161.3503.1 ID=mRNA_E-siliculosus-1a_F_contig161.3503.1|Name=mRNA_E-siliculosus-1a_F_contig161.3503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4644bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig161:20438..25081+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCACTTTCCTGCCGCTGCTGTCTCTCTCTGCTGGCTGATCATGCACGAC
TTCTGCCTCACTATCCCTTATGGGATGATTGTGATGTTTGGGGGAATCAT
CGGTTTCCTCGCAGCGGGCTCGAGAGCTTCTCTAATGGCGGGGGTGAGGA
TCGACTTTGTTCTCAATAAAATTACGCCGCATTTAGTTCTCTGCCGGATC
TCGGGACATTAGACATTAGGGAGCAGTGCTCTGTAGTATGGCAGTACATC
CCGGATGTATCTCTCTCTGTGACTGTTGTTATTGAATGCCGTCCTTTTAA
ATCGGTACCCTTTTCCTTGCTTGCGCGCCCTCAGTTTCTCCAATTCAGCT
CACGAAGTTGGAAAACATGTGTAGCTTGCCGCGTTCGCCAGTCTCCCGTT
CTCTTTGATCCGTACACACGAGCAGTCCTCTTTTGTTGCTCGGGGGAGCT
CCGGACGGCTGTTTCCTTTTCATTTGTGGGCCAAAAGTGTGTTCAAGGAC
GTCGAAAACGCCCTGGGTTCCCATTGATGGGATACCTAATCAATCTGCAA
TATAGCAACGTTTTCGGCTCCTTTTTCAACCTGTGCGCCTTCCCACTGCT
GGTTGGTTTGCACAACTTCTACTGCTGTAGGCCCCCCCCTCTACCATTCT
TTAGGCATATTCGGGGGCAGATGCTGTGTTGATCCGTTGGAGGTGGACAT
GTTATTGGTCTTGGGCTACGTCGCTGGAGCTCCTCTTTTGGTTGCCTCTT
GCTCATCCAGCACGCCACGTTGCTGTCTTCGCAACGTATTTCGTACGGCT
ATGTGTTGGCGCCTACCTCTCGTCGGCGCGCATACTGGAACAGGGCGGAA
GCGGGGCGCTCCTCATGCTTCTGGGTTACGGAGGGTAAGCCCTGCTTTAC
GTACATGGTACACGAGCTTGCGAGAGATTGATCGTTAAACTTTCTCTACA
AAGAGTAGAGAATTTTCCTTGACGCCATCTTCGTGTCATCTTCTCTGGGG
TCCTGGTGCCTGTGCAACTGAACACTCCGTCGGTATTTTCGTCACTATTT
AGGATGTTCACACGATCGAAAGGAATTCATTGGCATGCTGTGTGATGGGT
AATTTTCGTCTTGTTGTTATGACACTTTAGGTAATTGGGCACCACATCTA
TAGTTGCCTTTTTTCCTGAGGCCATATGATACTCAACCAAGGAGAGGACC
ATGGCACAAGAATTTGAAGTAGCGTAGGGCTTGTCTTCCCCCAAGTACAT
CCAGAGGTTTACAGCGACCGAGAGAAGAAGCAGCCGCGCAAGAGGCCGTA
TGTTAATTTCCTTTGCCGATGTCCAGCTTCGCTACATCCCTACTTGACCA
CGAACAGCAAACGTAGCCAATTGTTATCCCCACCCATGCCCCTGCTGCCC
CGAGAGCCATCGGAGTGGGGTTTTCGTCCCTTGGCAACGACGTTGTAAAT
CACGCCGATTGCTTCGTGAGTTCGACAACCAGGTTACCGCTTTTTTTTTT
TGCCTTTCGGTTTTTTTATTTGCGGTAACCATAGTGGCAGTCGAGTGGAT
TATGTTGGCGGGGTCGAGAACCCTCATTCCGCGCAAAGGGGATGGTCGCA
CCACCCTGTGTTATAGTGTTCAAACACTTTCGAGGCAGATACACAATGCT
CGTAATTGTCTCTGGAAGCGAGCACCACAAGAGAACGCACGTCATTCGCA
GCATCTGTATGCAAGGAAGTAAGCACAAGATGCCGAACACCTTTCGCAGG
ATGCAGCGCACCCTCCATGCGACTCGCCGAATGCCTCACTGCGCTTCGCG
CTTGGTGATGTGAGAGCCTGGTGCGGAGAGAATCCAACGTGCCCCGTCCC
AGCTTTGTAGGGATGCGAGGTAATTGGTCTAACGACTACGGCATGCACGA
CTATGAGTACCCCCCCCCCCCCCCCCCTCCTCCATCGCATTTGACGTCTC
TCAGCGTTCTCCTGTTTTTAGCCTGTCAAACAACAGCCTCGACAGTATCA
TCGCGATCGTTTTGTCCCGCAGCACAGGATTATGTGGGCGCTGATGGCCG
CACTGCCGCAGACACTTACGCTGACTTGCTCCTGCCTACCTTGCTTTACC
GTATGTACCGCATTTCCCCCCTTTCGGTGTCTCGGTCTCTTGACTTAGGT
ACATGGAGTACAAGGCGAAGTGAGTGCAGAACCCCTCCCTGCAGCCCTGG
CAGGCTTTGTCACATCAGTGTGCGGGCAGGGAACGAATCTTGGTCGAGGC
AGCAGCAGTGCAGTATCACATGGGTGGAGAAAAGGGCAGAGCAGTAACGG
ACGTGCTGGGAATCATGCTGCGGTCCCCGTGTTTTTTTTGTCAAGTTGAA
GTTCGGGTTGACTGGGTAGCAATGCCCCACCGAGAAACCTTGGGGGCCTT
CGGACTTTTTGTGCGCCCATCACCACTGGCCTCTTGTTTTATCTTTCTTT
TTTGAAACGTCTATATGGTGTAGGGCGCCCTTGGGTGGTGAACGGGTAAC
TGATGCAGCTGCGGAATACCAGGCATCTAATCGAAAGCCCCCGTGTTACA
CACTATCCCATTTGTACATGAAGTAAGACAATCTTTCGGTATCGCTCCTA
TTGTTCAAGTGCTTTGTAAATGTTGCTCACGCTGCTGGTGATCCCTTACA
ACGCTGAATGCTCTCTTGCTCGCTTGTACTACAGGGGCACCGTCTCTCAG
CTGTGGACTATCGCGTCGCTTGGTGAGTGCAGGGGCAGGGGGGTAAACGC
CTAAAACTGGGCATTGAAACAGCCCTGTCGCAACATGGCAGCCTCGTAAG
GACTCACTCACTGTCAGTAATTGTGCCTGGCAAGATTTTGACACCCTGAC
AGCAGAGATTTCTGTTGTCTATTGGTCAAACGTAGTTACGATCTAGATCG
GGCGAGGCTACACCGTAAAATTTCGGTGGTGAACGTGCGGGAGCTGGTTC
CAAGTTTGTTTTCATGTGGTCCTGCTATGCGCTTGTAACTCCGTGGTGCA
GGCAGGTACGCCCGAGCTGACTTTCGATAACCCTTCCGACAGAGGAGGGT
TTTCCAAGCCGTGAAGTTTCTTTTGACACACATGCGTATGTTATGTGTGG
ACACATATTCGTACATACATGCCCGGTAGCCTGTGCTGCATCGGCCGCAT
GTGCAACGCCGACAATTTTTTTTCCTGTGCGACCAGCTGGTGCAACACGC
ACCGACAGGACAGCTTTTTACTCGCTGCTGCCCCTGTGTCTTTTTTCTCG
CCTGGTTCCGTACGCTCGCACCACGTTGCTCCTTCTCTCGTGTCCATGCA
TCCCGCAGTGATATCTAACGTCATTTGGGTCATGATGGCGAAGCGGTTCC
GCAAGACAGGGAAGATCATGCCGTCTGCGCCGCTCGGCATCCTCGCGCTG
TTGATGGCCTTCTTCTACGCTTACCAGATGGCGAAGACGACCAAGACCAA
CTTCAAACCTGCCGCACAGGATGGCAGCGCAACTGATAAGAAGGAGTCTT
GATGCTCTTTTTTTCACATTTTTTTTTGGTCTCGCGGTCTTTGTCGAGGT
ACTGTTAAGGTCGTTAGGGTGTTCGACGCGGTAGAACGATAACCTTGAGC
GAGCTGACCGATGTGATTCCGACCAACCCACTTGTAGACACCGCCGGGAG
GAAGGTGAGGTGGGTTGAGGAGTTTACGCTGCCCGAAGGTGTCGGCCTAT
CCATGTACGTCGTTCGACGTGACGCTGGTCGTGCGATGGGCCAGGGTTGA
CTGGTATATAGAGCGGCAGCATGACGTTGCGCCGCAATTGTGTGGTATTG
TCTTGTGCTTCCTGCGCACTAGAAAAGCCCTAGCTTATCTTGCTTTTTCC
AACGTACACAGCTGTACGTCGGGAGTTTTTTTGTGCGGATGTGCGGATGT
GCGGCCTGAGGCAGAAGGAGCGGAGGTGGGAAGTTGAATAGCTTCTGGTG
ACATGAAGGAGGCGGTTTTTCGCGCTCATGCGTTCTGTAACTTACGGAGC
TCTCTTTGTCGTTGTGGGAGCTGCCAGCCAGCACAGCGTTGGCCGAAGAC
AGCAGGGCATCCGTAGTGAGCAACGGTGGGCGGTGAGGTCGTTTGGGCAT
CGACTACGATGTAAGTTGTCAATGTCGCCCCCTGTTGTTTTGTTTTGCCT
TTCGGGTGGTGTTTTTTCTCGTGATATCCGTGTCTGTAACAAGGGTTCAC
CTCGCCTATTCTGTAGCATCCACGGCGTATGGGCCTCAACATGACTCAGA
TATATTTGTGGGGGGAGGTGATGGTGATAATTTATTTCTGTGTGCTTCTT
CTCCATAGAGGAGCCGGGGATTTCATGGTTGGTTGGTCTCCGACACGCCA
GGAGTGTTTCCAACAGCTATGGTGTGTACGTTCGTGTGGCTTACACACCT
ACCTTTTCTCGAAATTCAAATATCGCGCATCGTGTAGGTACCTGTGAGCG
ACCTACAGCCGCCGTCGAACCCTTCTTTGGATTTCTTAGTCACGATGTAT
GTAAGTACGCGACTGGACGCTACCGAGGTCCTTGTATACGGGGAAAGCAA
TGGTGCCCACTGCTGCCACTGGGCTCTGCAGAATGTTGACCTACGGTCGT
GCATTAGCATCATGCACAGCAGTCGCTGACGAAGTCTTTCGCCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig161:20438..25081+

>mRNA_E-siliculosus-1a_F_contig161.3503.1 ID=mRNA_E-siliculosus-1a_F_contig161.3503.1|Name=mRNA_E-siliculosus-1a_F_contig161.3503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=792bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig161:20438..25081+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACGACTTCTGCCTCACTATCCCTTATGGGATGATTGTGATGTTTGG
GGGAATCATCGGTTTCCTCGCAGCGGGCTCGAGAGCTTCTCTAATGGCGG
GGATGCACGACTTCTGCCTCACTATCCCTTATGGGATGATTGTGATGTTT
GGGGGAATCATCGGTTTCCTCGCAGCGGGCTCGAGAGCTTCTCTAATGGC
GGGGGGCGGAAGCGGGGCGCTCCTCATGCTTCTGGGTTACGGAGGGGCGG
AAGCGGGGCGCTCCTCATGCTTCTGGGTTACGGAGGGTACATGGAGTACA
AGGCGAAGTACATGGAGTACAAGGCGAAGGGCACCGTCTCTCAGCTGTGG
ACTATCGCGTCGCTTGGGGCACCGTCTCTCAGCTGTGGACTATCGCGTCG
CTTGTGATATCTAACGTCATTTGGGTCATGATGGCGAAGCGGTTCCGCAA
GACAGGGAAGATCATGCCGTCTGCGCCGCTCGGCATCCTCGCGCTGTTGA
TGGCCTTCTTCTACGCTTACCAGATGGCGAAGACGACCAAGACCAACTTC
AAACCTGCCGCACAGGATGGCAGCGCAACTGATAAGAAGGAGTCTTGATG
ATATCTAACGTCATTTGGGTCATGATGGCGAAGCGGTTCCGCAAGACAGG
GAAGATCATGCCGTCTGCGCCGCTCGGCATCCTCGCGCTGTTGATGGCCT
TCTTCTACGCTTACCAGATGGCGAAGACGACCAAGACCAACTTCAAACCT
GCCGCACAGGATGGCAGCGCAACTGATAAGAAGGAGTCTTGA
back to top