mRNA_E-siliculosus-1a_F_contig1608.3490.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1608.3490.1 vs. uniprot
Match: A0A6H5KA32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA32_9PHAE) HSP 1 Score: 375 bits (964), Expect = 8.740e-125 Identity = 257/383 (67.10%), Postives = 260/383 (67.89%), Query Frame = 3
Query: 18 TEDGIERAMALSRGSQTTEGVFSRPP---QSDNSSGSAAGRTRTASSSSRQRALVSPIDASLTLWSEGRRERVAELEEELRLRDARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------RAVED----------------------------TATNTGASARSGEAAGTRDRGRPRGGSSSTTLEDRLGRWGAGWRPPALRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGRCPGLTLAYYRLALCVLAARGEHGSRQAKLLLDCAMSLEGAENRHLSAGVDLVLRILR 941
TEDG E MALSRGSQTTE V SR QSDN ASSS RQRALVSPIDASLTLWS+GRRERVAELEEELRL DAR XXXXXXXXXXXXXXXXXXXXX RA TAT GASAR G+AAG RDR PRGGSSSTTLEDRLGRWGAGWRPP LRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSD ELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGRCPGLTLAYYRLALC+LAARGEHGSRQAKLLLDCAMSLEGAENRHLSAGVDLVLRILR
Sbjct: 20 TEDGTE-PMALSRGSQTTEAVVSRSQPQAQSDNXXXXXXXXXXXASSS-RQRALVSPIDASLTLWSDGRRERVAELEEELRLWDARRRQXXXXXXXXXXXXXXXXXXXXXQEGESATGRDATPAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIPRATAQPPSRDHHGGXXXXXXXXXXXXXXXXXXGTATTAGASARPGDAAGARDRRHPRGGSSSTTLEDRLGRWGAGWRPPPLRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSDPELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGRCPGLTLAYYRLALCILAARGEHGSRQAKLLLDCAMSLEGAENRHLSAGVDLVLRILR 400
BLAST of mRNA_E-siliculosus-1a_F_contig1608.3490.1 vs. uniprot
Match: D7FZF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF3_ECTSI) HSP 1 Score: 313 bits (803), Expect = 2.270e-103 Identity = 189/316 (59.81%), Postives = 189/316 (59.81%), Query Frame = 3
Query: 3 MRCGGTEDGIERAMALSRGSQTTEGVFSRPP---QSDNSSGSAAGRTRTASSSSRQRALVSPIDASLTLWSEGRRERVAELEEELRLRDARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVEDTATNTGASARSGEAAGTRDRGRPRGGSSSTTLEDRLGRWGAGWRPPALRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGRCPGLTLAYYRLALCVLAARGEHGSRQAKLLLDCAMSLEGAENRHLSAGVDLVLRILR 941
MRCGGTEDG ERAMALSRGSQTTEGV SR QSDNSSGSAAGRTRTASSS RL RWGAGWRPPALRPLPRGGEGFFSGWTHLGQ ERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAM FSTAAGILEGVLGRCPGLTLAYYRLALCVLAARGEHGS QAKLLLDCAMSLEG ENRHLSAGVDLVLRILR
Sbjct: 1 MRCGGTEDGTERAMALSRGSQTTEGVVSRSQPQAQSDNSSGSAAGRTRTASSS-------------------------------------------------------------------------------------------------------------------RLARWGAGWRPPALRPLPRGGEGFFSGWTHLGQSERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAMYFSTAAGILEGVLGRCPGLTLAYYRLALCVLAARGEHGSSQAKLLLDCAMSLEGVENRHLSAGVDLVLRILR 201
BLAST of mRNA_E-siliculosus-1a_F_contig1608.3490.1 vs. uniprot
Match: A0A7S1CKU0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKU0_9STRA) HSP 1 Score: 110 bits (274), Expect = 6.620e-25 Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 3
Query: 537 LRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGRCPGLTLAYYRLALCVLAARGEHGSRQAKLLLDCAMSLEGAENRHLSAGVDLVLRILRNDAIPESYWSEDYPRSLGDLRALDAAI 1022
L+PLP E +++ T +G+ ERFELVKSA RS+ G +D +LE VL E A+ M+ +F A +L R P TLAY+R A LA G G AK LL A++LE N+ L+ GVDL+LR++ A+P YW + +S GD+ AL A +
Sbjct: 1 LKPLPHADE-YWTTETWMGECERFELVKSARRSLDATGRAPTDEQLELCVLLAEAADGAMTREEFPRARDLLLEAARRLPSFTLAYFRAAEATLAIDGRRGLAAAKPLLRAAVALEPG-NKQLATGVDLLLRVVSRVAVPGHYWLAENAKSSGDVLALAAIV 160 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1608.3490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1608.3490.1 >prot_E-siliculosus-1a_F_contig1608.3490.1 ID=prot_E-siliculosus-1a_F_contig1608.3490.1|Name=mRNA_E-siliculosus-1a_F_contig1608.3490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=345bp MRCGGTEDGIERAMALSRGSQTTEGVFSRPPQSDNSSGSAAGRTRTASSSback to top mRNA from alignment at E-siliculosus-1a_F_contig1608:7087..12085+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1608.3490.1 ID=mRNA_E-siliculosus-1a_F_contig1608.3490.1|Name=mRNA_E-siliculosus-1a_F_contig1608.3490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4999bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1608:7087..12085+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1608:7087..12085+ >mRNA_E-siliculosus-1a_F_contig1608.3490.1 ID=mRNA_E-siliculosus-1a_F_contig1608.3490.1|Name=mRNA_E-siliculosus-1a_F_contig1608.3490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2070bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1608:7087..12085+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |