mRNA_E-siliculosus-1a_F_contig1607.3487.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1607.3487.1
Unique NamemRNA_E-siliculosus-1a_F_contig1607.3487.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3487.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 572 bits (1474), Expect = 1.450e-186
Identity = 288/291 (98.97%), Postives = 291/291 (100.00%), Query Frame = 1 
Query:    1 QEGASIDRETENGCTALIIAAEEDPHAPNHTWVRNEEGWEVLAAALLLDRRIHRPKIDYESKVTGHTALTRACALGRLETAEVLLDRGADINRRPKRRPITPLPPLRQTPRQRQPGSPPSLATLPSSSVSRAAAAAVELRERFCRPPLVAAAAAGHASMVRLLLDRGADPAVADGNGETAADVAKRRAFVDVQGELARKEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECAHREVECNYKCGAYRLQHRELARHLAESCRLRPVVCSTRCGVSVVAEDYA 873
            QEGASIDRETENGCTALIIAAEEDPHAPNHTWVRNEEGWEVLAAALLLDRRIHRPKIDYESKVTGHTALTRACALGRLETAEVLLDRGADINRRPKRRPITPLPPLRQTPRQR+PGSPPSLATLPSSSVSRAAAAAVELRERFCRPPLVAAAAAGHASMVRLLLDRGADPAVADGNG+TAADVAKRRAFVDVQGELARK+AGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECAHREVECNYKCGAYRLQHRELARHLAESCRLRPVVCSTRCGVSVVAEDYA
Sbjct: 1411 QEGASIDRETENGCTALIIAAEEDPHAPNHTWVRNEEGWEVLAAALLLDRRIHRPKIDYESKVTGHTALTRACALGRLETAEVLLDRGADINRRPKRRPITPLPPLRQTPRQRRPGSPPSLATLPSSSVSRAAAAAVELRERFCRPPLVAAAAAGHASMVRLLLDRGADPAVADGNGDTAADVAKRRAFVDVQGELARKDAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECAHREVECNYKCGAYRLQHRELARHLAESCRLRPVVCSTRCGVSVVAEDYA 1701
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3487.1 vs. uniprot
Match: A0A6H5L3D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D7_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.180e-62
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:  586 LARKEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECAHREVECNYKCGAYRLQHRELARHLAESCRLRPVVCSTRCGVSVVAEDYANHQA 885
            + +KEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQ+CAHREVECNYKCGAYRLQHRELARHLAESCRLRPVVCSTRCGVSVVAEDYANHQA
Sbjct:    1 MQQKEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQQCAHREVECNYKCGAYRLQHRELARHLAESCRLRPVVCSTRCGVSVVAEDYANHQA 100
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3487.1 vs. uniprot
Match: A0A835ZJU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.210e-11
Identity = 68/190 (35.79%), Postives = 85/190 (44.74%), Query Frame = 1 
Query:    7 GASIDRETENGCTALIIAAEEDPHAPNHTWVRNEEGWEVLAAALLLDRRIHRPKIDYESKVTGHTALTRACALGRLETAEVLLDRGADINRRPKRRPITPLPPLRQTPRQRQPGSPPSLATLPSSSVSRAAAAAVELRERFCRPPLVAAAAAGHASMVRLLLDRGADPAVADGNGETAADVAKRRAFVDV 576
            GA  D ET +G T L+  AE +  A             V A   +L R  HRP +D+E  V GHTALT A      + A VLL RGA I+R                               P+ + +RA              PL AAAAAG A++VRLLL+RGAD A  D +G T  D+A+ R F DV
Sbjct:  348 GADPDHETPDGETLLMRVAEMEGDAG------------VAALRDMLSRGTHRPALDHEGAVRGHTALTWAA-----DIACVLLQRGALIDR-------------------------------PAGAAARA--------------PLAAAAAAGRAAVVRLLLERGADAAARDASGATPLDLARARGFHDV 475
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3487.1 vs. uniprot
Match: A0A836CGL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.420e-11
Identity = 68/190 (35.79%), Postives = 85/190 (44.74%), Query Frame = 1 
Query:    7 GASIDRETENGCTALIIAAEEDPHAPNHTWVRNEEGWEVLAAALLLDRRIHRPKIDYESKVTGHTALTRACALGRLETAEVLLDRGADINRRPKRRPITPLPPLRQTPRQRQPGSPPSLATLPSSSVSRAAAAAVELRERFCRPPLVAAAAAGHASMVRLLLDRGADPAVADGNGETAADVAKRRAFVDV 576
            GA  D ET +G T L+  AE +  A             V A   +L R  HRP +D+E  V GHTALT A      + A VLL RGA I+R                               P+ + +RA              PL AAAAAG A++VRLLL+RGAD A  D +G T  D+A+ R F DV
Sbjct: 2338 GADPDHETPDGETLLMRVAEMEGDAG------------VAALRDMLSRGTHRPALDHEGAVRGHTALTWAA-----DIACVLLQRGALIDR-------------------------------PAGAAARA--------------PLAAAAAAGRAAVVRLLLERGADAAARDASGATPLDLARARGFHDV 2465
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3487.1 vs. uniprot
Match: A0A7S2QZX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZX6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.480e-8
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  121 VLAAALLLDRRIHRPKIDYESKVTGHTALTRACALGRLETAEVLLDRGADIN 276
            V   + LLDR  HRP +D+E   +GHTA T ACA GR+E A  LLDRGA +N
Sbjct:   26 VSPVSYLLDRVKHRPTVDFECSKSGHTAFTYACANGRIEAANELLDRGAQLN 77
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1607.3487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FW96_ECTSI1.450e-18698.97Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L3D7_9PHAE1.180e-6296.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJU0_9STRA1.210e-1135.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGL9_9STRA1.420e-1135.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2QZX6_9STRA1.480e-855.77Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1607contigE-siliculosus-1a_F_contig1607:23476..25492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size885
Model size886
Exons4
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EggNOG free text desc.TNF receptor-associated factor
KEGG Pathwayko03015,map03015
KEGG koko:K08873
Seed eggNOG ortholog2880.D7FW96
Seed ortholog evalue5e-162
Seed ortholog score577.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1607.3487.1prot_E-siliculosus-1a_F_contig1607.3487.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1607 23476..25491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928123.3613734-CDS-E-siliculosus-1a_F_contig1607:23475..236431622928123.3613734-CDS-E-siliculosus-1a_F_contig1607:23475..23643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 23476..23643 +
1696318813.35067-CDS-E-siliculosus-1a_F_contig1607:23475..236431696318813.35067-CDS-E-siliculosus-1a_F_contig1607:23475..23643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 23476..23643 +
1622928123.3735838-CDS-E-siliculosus-1a_F_contig1607:24161..245871622928123.3735838-CDS-E-siliculosus-1a_F_contig1607:24161..24587Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 24162..24587 +
1696318813.3659337-CDS-E-siliculosus-1a_F_contig1607:24161..245871696318813.3659337-CDS-E-siliculosus-1a_F_contig1607:24161..24587Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 24162..24587 +
1622928123.385571-CDS-E-siliculosus-1a_F_contig1607:24963..251041622928123.385571-CDS-E-siliculosus-1a_F_contig1607:24963..25104Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 24964..25104 +
1696318813.3744676-CDS-E-siliculosus-1a_F_contig1607:24963..251041696318813.3744676-CDS-E-siliculosus-1a_F_contig1607:24963..25104Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 24964..25104 +
1622928123.4680057-CDS-E-siliculosus-1a_F_contig1607:25341..254911622928123.4680057-CDS-E-siliculosus-1a_F_contig1607:25341..25491Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 25342..25491 +
1696318813.3821926-CDS-E-siliculosus-1a_F_contig1607:25341..254911696318813.3821926-CDS-E-siliculosus-1a_F_contig1607:25341..25491Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 25342..25491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1607.3487.1

>prot_E-siliculosus-1a_F_contig1607.3487.1 ID=prot_E-siliculosus-1a_F_contig1607.3487.1|Name=mRNA_E-siliculosus-1a_F_contig1607.3487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=295bp
QEGASIDRETENGCTALIIAAEEDPHAPNHTWVRNEEGWEVLAAALLLDR
RIHRPKIDYESKVTGHTALTRACALGRLETAEVLLDRGADINRRPKRRPI
TPLPPLRQTPRQRQPGSPPSLATLPSSSVSRAAAAAVELRERFCRPPLVA
AAAAGHASMVRLLLDRGADPAVADGNGETAADVAKRRAFVDVQGELARKE
AGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECAHREVECNY
KCGAYRLQHRELARHLAESCRLRPVVCSTRCGVSVVAEDYANHQA
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mRNA from alignment at E-siliculosus-1a_F_contig1607:23476..25492+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1607.3487.1 ID=mRNA_E-siliculosus-1a_F_contig1607.3487.1|Name=mRNA_E-siliculosus-1a_F_contig1607.3487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2017bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1607:23476..25492+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAAGGGGCTTCGATCGACAGAGAGACGGAGAACGGCTGCACGGCTCT
CATCATCGCCGCCGAGGAAGACCCTCACGCTCCGAACCACACTTGGGTCA
GGAACGAGGAGGGGTGGGAGGTGTTGGCGGCCGCCCTGCTCTTGGATCGG
CGAATTCACCGCCCGAAAGTGCGCACACCATCACCTATACTCTCTGTGTG
GATACGACTTTGTTGTCTTTCCTTTTGGTTTGTTGTCCTACAGTTGTGTT
GTGTTCTGCGTGTGGCGTTTTGTGCTCTGCGTGAAAAAAAGTTTCGATGC
TGAGCCGGTTGGCTGCCTACGACTACGGGTTCTATGAGGACCGCGAACGA
CCCGCGTAGGTACATTGTCGATGGACAGGCCCTGTCACGGAAGAGGTAGA
GCCTGCTTTGCGCCGATCGCCTTTCGCGTATCGGGTGTTCCCGAGTATGA
AGAAGCGAAGGTCGGAAGACGCCTCGGAAGCAGTGTGATGTTGCGACACG
ACCATTGGGTATCGTTGCTTGGTGTTGATAGTTATGCAGTCAAAAATTCT
AAACATATCGTGACGCCTCCTTCCCCGTCCCGCCACCCGCCTGGTTTCCT
CTGCGCGTGTGGACCGTTCGTCATCTTGCCGCACCACTCCCCCCCGCGCC
GACCACAACGAACGACAACAACACGTAACAACAAAGATCGACTACGAGTC
GAAGGTGACGGGACACACAGCACTTACCCGCGCCTGCGCCCTGGGTCGTC
TCGAGACCGCCGAGGTCCTCCTCGATCGCGGCGCCGACATAAACCGCCGC
CCCAAACGCCGCCCGATAACGCCCCTGCCACCTCTACGCCAAACCCCGCG
GCAACGCCAACCGGGATCCCCGCCATCACTAGCCACCCTCCCTTCTTCGT
CGGTATCGCGAGCGGCCGCCGCGGCGGTGGAGCTGCGAGAGCGATTCTGC
CGGCCACCTCTCGTGGCCGCCGCTGCCGCTGGGCACGCTTCGATGGTGAG
GCTCCTGCTCGACCGCGGGGCTGATCCGGCGGTAGCGGACGGGAACGGCG
AGACGGCGGCGGACGTAGCCAAGAGGAGGGCGTTTGTTGACGTGCAGGGA
GAGCTCGCTCGGGTAAGGGTATGAAGAGGCAAAAGCGTTTGAGAAAGTGG
GGGGGTAGCGGCCGTGCACGGGTGAAAGTGGCCATGCACGGGGAAAGAAG
AGGCGAGGGGGGGTAGTAGGTGGATTGAAGAGTGAGTTGCAGTATCGCGA
AGGAAATGGCAGGTTTGAGCATTGTATATATGATACGAAGATGTCGACGT
GCGTGGTAAGCACTTATCAGATCACACATCCTTGTCCTCCTATGCTTGTT
GGCCAATCGGTGGGTACAAATAATTTCGTCAAAGAGGTACGCAATAGGCT
ACCCCTCCACGGAGTCTTGCCTGTTCCTCCGCGAACTCTCGTTTGACCAA
CACATCATTTGGGTCCACCTATCGTGTGTACGCAACAGAAAGAGGCTGGG
TACTTCGGAGTCGCGGCAGGGCAGCGCGGGGCGGCCAATCCCCTCGTTCC
GTGCTGCTGGGGGTGCGGCAAGCTGGTGGAGACGGGCCACCGCAAGATCG
AACACGAGCAAGAATGTGCCCATCGGGAGGTAAGCCGTATTCCGCTGTGT
GTGTATCGCTTATTTCCTTGTGCTCCATGCTATCATCCGCTCTATCGTGC
GCAGCTGTGATGACGAACGCGCCACTGTACTTGTCTGAGTGCTTGTAGGA
AAGTACCCGTCAAGTCGATTTGTTCGCGCTCGCGTGTTCCCTTCCACATC
CGCGTTTAGCACGAGGGGTATGAACCATGATACATGATATGCGATTCGCA
TAATAAAACCATTCAGGTTGAGTGCAACTACAAGTGCGGCGCGTATCGCC
TCCAGCACCGGGAGCTGGCACGCCACCTTGCGGAGTCGTGCCGCCTTCGC
CCCGTCGTATGCAGCACGCGTTGCGGAGTTTCTGTCGTCGCTGAGGACTA
TGCGAATCACCAGGCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1607:23476..25492+

>mRNA_E-siliculosus-1a_F_contig1607.3487.1 ID=mRNA_E-siliculosus-1a_F_contig1607.3487.1|Name=mRNA_E-siliculosus-1a_F_contig1607.3487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1770bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1607:23476..25492+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAAGGGGCTTCGATCGACAGAGAGACGGAGAACGGCTGCACGGCTCT
CATCATCGCCGCCGAGGAAGACCCTCACGCTCCGAACCACACTTGGGTCA
GGAACGAGGAGGGGTGGGAGGTGTTGGCGGCCGCCCTGCTCTTGGATCGG
CGAATTCACCGCCCGAAACAGGAAGGGGCTTCGATCGACAGAGAGACGGA
GAACGGCTGCACGGCTCTCATCATCGCCGCCGAGGAAGACCCTCACGCTC
CGAACCACACTTGGGTCAGGAACGAGGAGGGGTGGGAGGTGTTGGCGGCC
GCCCTGCTCTTGGATCGGCGAATTCACCGCCCGAAAATCGACTACGAGTC
GAAGGTGACGGGACACACAGCACTTACCCGCGCCTGCGCCCTGGGTCGTC
TCGAGACCGCCGAGGTCCTCCTCGATCGCGGCGCCGACATAAACCGCCGC
CCCAAACGCCGCCCGATAACGCCCCTGCCACCTCTACGCCAAACCCCGCG
GCAACGCCAACCGGGATCCCCGCCATCACTAGCCACCCTCCCTTCTTCGT
CGGTATCGCGAGCGGCCGCCGCGGCGGTGGAGCTGCGAGAGCGATTCTGC
CGGCCACCTCTCGTGGCCGCCGCTGCCGCTGGGCACGCTTCGATGGTGAG
GCTCCTGCTCGACCGCGGGGCTGATCCGGCGGTAGCGGACGGGAACGGCG
AGACGGCGGCGGACGTAGCCAAGAGGAGGGCGTTTGTTGACGTGCAGGGA
GAGCTCGCTCGGATCGACTACGAGTCGAAGGTGACGGGACACACAGCACT
TACCCGCGCCTGCGCCCTGGGTCGTCTCGAGACCGCCGAGGTCCTCCTCG
ATCGCGGCGCCGACATAAACCGCCGCCCCAAACGCCGCCCGATAACGCCC
CTGCCACCTCTACGCCAAACCCCGCGGCAACGCCAACCGGGATCCCCGCC
ATCACTAGCCACCCTCCCTTCTTCGTCGGTATCGCGAGCGGCCGCCGCGG
CGGTGGAGCTGCGAGAGCGATTCTGCCGGCCACCTCTCGTGGCCGCCGCT
GCCGCTGGGCACGCTTCGATGGTGAGGCTCCTGCTCGACCGCGGGGCTGA
TCCGGCGGTAGCGGACGGGAACGGCGAGACGGCGGCGGACGTAGCCAAGA
GGAGGGCGTTTGTTGACGTGCAGGGAGAGCTCGCTCGGAAAGAGGCTGGG
TACTTCGGAGTCGCGGCAGGGCAGCGCGGGGCGGCCAATCCCCTCGTTCC
GTGCTGCTGGGGGTGCGGCAAGCTGGTGGAGACGGGCCACCGCAAGATCG
AACACGAGCAAGAATGTGCCCATCGGGAGAAAGAGGCTGGGTACTTCGGA
GTCGCGGCAGGGCAGCGCGGGGCGGCCAATCCCCTCGTTCCGTGCTGCTG
GGGGTGCGGCAAGCTGGTGGAGACGGGCCACCGCAAGATCGAACACGAGC
AAGAATGTGCCCATCGGGAGGTTGAGTGCAACTACAAGTGCGGCGCGTAT
CGCCTCCAGCACCGGGAGCTGGCACGCCACCTTGCGGAGTCGTGCCGCCT
TCGCCCCGTCGTATGCAGCACGCGTTGCGGAGTTTCTGTCGTCGCTGAGG
ACTATGCGAATCACCAGGCGGTTGAGTGCAACTACAAGTGCGGCGCGTAT
CGCCTCCAGCACCGGGAGCTGGCACGCCACCTTGCGGAGTCGTGCCGCCT
TCGCCCCGTCGTATGCAGCACGCGTTGCGGAGTTTCTGTCGTCGCTGAGG
ACTATGCGAATCACCAGGCG
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