mRNA_E-siliculosus-1a_F_contig1607.3486.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1607.3486.1
Unique NamemRNA_E-siliculosus-1a_F_contig1607.3486.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3486.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 5.820e-71
Identity = 141/161 (87.58%), Postives = 148/161 (91.93%), Query Frame = 1 
Query:    1 SGVAAISSRSFQAMQSRALRLFQRSVSRFQVLTEDDFKRVADLNLLPEDVGVRKVAVDKAEDGENEGEALKKADSKAEVDGEAVPTVQEGDREEHAGIAEEKEAGRNPTPSLSAAASSSS-SRCQRSLGQSHSGNDAEAGELGVKEVNLALSPPSATVLAA 480
            SGVAAISS+SFQAMQSRALRLFQRSVSRFQVLTEDDFKRVADLNL PEDVGVRK+AVDKAE G+NEGEALKKADSKAEVDGEAVPTVQEGDREEHAGIAEEKEAGRNPTPSLSAA S    SR Q +LGQSHSGNDA+AGELGVKEVN A SPP+ T+ AA
Sbjct: 1063 SGVAAISSQSFQAMQSRALRLFQRSVSRFQVLTEDDFKRVADLNLFPEDVGVRKMAVDKAEGGKNEGEALKKADSKAEVDGEAVPTVQEGDREEHAGIAEEKEAGRNPTPSLSAATSXXXXSRRQLTLGQSHSGNDADAGELGVKEVNPASSPPATTIPAA 1223
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3486.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 2.430e-69
Identity = 139/160 (86.88%), Postives = 141/160 (88.12%), Query Frame = 1 
Query:    1 SGVAAISSRSFQAMQSRALRLFQRSVSRFQVLTEDDFKRVADLNLLPEDVGVRKVAVDKAEDGENEGEALKKADSKAEVDGEAVPTVQEGDREEHAGIAEEKEAGRNPTPSLSAAASSSSSRCQRSLGQSHSGNDAEAGELGVKEVNLALSPPSATVLAA 480
            SGVA ISSRSFQAMQSRALRLFQRSVSRFQ LTEDDFKRVADLNLLPEDVGVRKVAVDKAE+GENEGEALKKADSKAEVD EA PTVQEGDREEHAGIAEEKEAGRNPTPSLS          Q SLGQS SG+DAEAGELGVKEVN ALSPPSAT  AA
Sbjct:  599 SGVAVISSRSFQAMQSRALRLFQRSVSRFQALTEDDFKRVADLNLLPEDVGVRKVAVDKAEEGENEGEALKKADSKAEVDEEAAPTVQEGDREEHAGIAEEKEAGRNPTPSLSXXXXXXXXXXQLSLGQSRSGSDAEAGELGVKEVNPALSPPSATAPAA 758
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1607.3486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2H6_9PHAE5.820e-7187.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW96_ECTSI2.430e-6986.88Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1607contigE-siliculosus-1a_F_contig1607:17887..18368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size480
Model size483
Exons1
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EggNOG free text desc.TNF receptor-associated factor
KEGG Pathwayko03015,map03015
KEGG koko:K08873
Seed eggNOG ortholog2880.D7FW96
Seed ortholog evalue1.6e-61
Seed ortholog score242.3
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928123.5093002-CDS-E-siliculosus-1a_F_contig1607:17886..183661622928123.5093002-CDS-E-siliculosus-1a_F_contig1607:17886..18366Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 17887..18366 +
1696318813.3928313-CDS-E-siliculosus-1a_F_contig1607:17886..183661696318813.3928313-CDS-E-siliculosus-1a_F_contig1607:17886..18366Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1607 17887..18366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1607.3486.1prot_E-siliculosus-1a_F_contig1607.3486.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1607 17887..18366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1607.3486.1

>prot_E-siliculosus-1a_F_contig1607.3486.1 ID=prot_E-siliculosus-1a_F_contig1607.3486.1|Name=mRNA_E-siliculosus-1a_F_contig1607.3486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=160bp
SGVAAISSRSFQAMQSRALRLFQRSVSRFQVLTEDDFKRVADLNLLPEDV
GVRKVAVDKAEDGENEGEALKKADSKAEVDGEAVPTVQEGDREEHAGIAE
EKEAGRNPTPSLSAAASSSSSRCQRSLGQSHSGNDAEAGELGVKEVNLAL
SPPSATVLAA
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mRNA from alignment at E-siliculosus-1a_F_contig1607:17887..18368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1607.3486.1 ID=mRNA_E-siliculosus-1a_F_contig1607.3486.1|Name=mRNA_E-siliculosus-1a_F_contig1607.3486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=482bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1607:17887..18368+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCAGGGGTGGCGGCCATCTCGTCGCGATCGTTCCAGGCCATGCAGAGCAG
GGCGCTCCGCCTCTTCCAGCGGAGCGTATCTCGCTTTCAGGTGCTCACCG
AGGACGACTTCAAGAGAGTCGCAGACCTTAACCTGCTTCCGGAAGACGTA
GGCGTGAGAAAGGTGGCCGTGGACAAAGCAGAGGACGGTGAGAACGAGGG
TGAGGCTCTTAAAAAGGCGGACTCTAAGGCTGAGGTGGACGGGGAAGCAG
TTCCCACCGTACAGGAAGGAGACAGAGAAGAACACGCCGGTATCGCGGAG
GAGAAAGAGGCAGGGAGGAACCCTACCCCCAGCCTTTCCGCGGCCGCCTC
CTCCTCCTCTTCCCGATGCCAGCGTTCTCTAGGGCAAAGCCACAGCGGTA
ATGACGCGGAGGCAGGGGAACTGGGTGTCAAGGAAGTAAATCTGGCTTTA
TCGCCGCCCTCTGCCACTGTTCTCGCGGCCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1607:17887..18368+

>mRNA_E-siliculosus-1a_F_contig1607.3486.1 ID=mRNA_E-siliculosus-1a_F_contig1607.3486.1|Name=mRNA_E-siliculosus-1a_F_contig1607.3486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1607:17887..18368+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCAGGGGTGGCGGCCATCTCGTCGCGATCGTTCCAGGCCATGCAGAGCAG
GGCGCTCCGCCTCTTCCAGCGGAGCGTATCTCGCTTTCAGGTGCTCACCG
AGGACGACTTCAAGAGAGTCGCAGACCTTAACCTGCTTCCGGAAGACGTA
GGCGTGAGAAAGGTGGCCGTGGACAAAGCAGAGGACGGTGAGAACGAGGG
TGAGGCTCTTAAAAAGGCGGACTCTAAGGCTGAGGTGGACGGGGAAGCAG
TTCCCACCGTACAGGAAGGAGACAGAGAAGAACACGCCGGTATCGCGGAG
GAGAAAGAGGCAGGGAGGAACCCTACCCCCAGCCTTTCCGCGGCCGCCTC
CTCCTCCTCTTCCCGATGCCAGCGTTCTCTAGGGCAAAGCCACAGCGGTA
ATGACGCGGAGGCAGGGGAACTGGGTGTCAAGGAAGTAAATCTGGCTTTA
TCGCCGCCCTCTGCCACTGTTCTCGCGGCCTCAGGGGTGGCGGCCATCTC
GTCGCGATCGTTCCAGGCCATGCAGAGCAGGGCGCTCCGCCTCTTCCAGC
GGAGCGTATCTCGCTTTCAGGTGCTCACCGAGGACGACTTCAAGAGAGTC
GCAGACCTTAACCTGCTTCCGGAAGACGTAGGCGTGAGAAAGGTGGCCGT
GGACAAAGCAGAGGACGGTGAGAACGAGGGTGAGGCTCTTAAAAAGGCGG
ACTCTAAGGCTGAGGTGGACGGGGAAGCAGTTCCCACCGTACAGGAAGGA
GACAGAGAAGAACACGCCGGTATCGCGGAGGAGAAAGAGGCAGGGAGGAA
CCCTACCCCCAGCCTTTCCGCGGCCGCCTCCTCCTCCTCTTCCCGATGCC
AGCGTTCTCTAGGGCAAAGCCACAGCGGTAATGACGCGGAGGCAGGGGAA
CTGGGTGTCAAGGAAGTAAATCTGGCTTTATCGCCGCCCTCTGCCACTGT
TCTCGCGGCC
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