mRNA_E-siliculosus-1a_F_contig1604.3478.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: A0A6H5JFQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ1_9PHAE) HSP 1 Score: 157 bits (396), Expect = 9.080e-42 Identity = 88/138 (63.77%), Postives = 96/138 (69.57%), Query Frame = 2
Query: 2 AAAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLLERIAATVDRIEGGIQESIMCLKRLQAPNYPYPHLVVVKKMETQGKRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AA VELV +VD+RLDR GVIFQDV+ RFANM+ RYTFS S Q EE LLERIAATVDR+EGGIQES+M LKRLQAPN P PHLV ++MTL FLCPVDMEKVPCGMNGEGYR
Sbjct: 663 AAIVELVSIVDVRLDR-----GVIFQDVETRFANMQSRYTFSRSSPNYQGEEALLERIAATVDRVEGGIQESLMYLKRLQAPNCPCPHLV----------------------EDMTLRFLCPVDMEKVPCGMNGEGYR 773
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 135 bits (340), Expect = 3.430e-34 Identity = 81/160 (50.62%), Postives = 109/160 (68.12%), Query Frame = 2
Query: 2 AAAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLL----ERIAATV----DRIEGGI-------QESIMCLKRLQAPNYPYPHLVVVKKMET-------QGKRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AAA++LVRMVDIRLDR VIF++VKARF ++EG+Y+FS ST S ++EG+L E +A T+ D ++G + QES+M L+ LQAPNYPYP LV ++++ + +G + SKLRG+ K MTLHFLCPVDM KVPCG +G+GYR
Sbjct: 939 AAAIDLVRMVDIRLDR-----DVIFREVKARFVDLEGQYSFSS-STASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLMRLQTLQAPNYPYPRLVAIEEIASGGTLTRARGMKRVLSKLRGVGTKEMTLHFLCPVDMTKVPCGYDGDGYR 1092
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 129 bits (323), Expect = 6.650e-32 Identity = 74/159 (46.54%), Postives = 96/159 (60.38%), Query Frame = 2
Query: 2 AAAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLLERIAATVDRIEGGI--------------QESIMCLKRLQAPNYPYPHLVVVKKMETQGKRSPP-------SKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AAA++LV MVDIRLDR VIF+DVK RF +E +Y+FS + S DE+ L++++ ++ G+ QES+M LK LQA NYPYP LV V+++ + G S +KLRG+ K M LHFLCPVDM KVPCG GEGYR
Sbjct: 839 AAAIDLVSMVDIRLDR-----DVIFRDVKQRFVELESQYSFSSSAASSNDEDVLIQKMEEVARTLKDGLDDLKGRLGKVLDSTQESLMRLKNLQAANYPYPRLVAVEEIASGGTPSKAHGINRVLNKLRGVGTKEMVLHFLCPVDMTKVPCGYGGEGYR 992
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.660e-31 Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 2
Query: 134 STMSQDEEGLLERIAATVDRIEGGIQESIMCLKRLQAPNYPYPHLVVVKKMETQGKRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
+T + E +L ++ + RIEGGIQES+MCLK LQ PNYPYPHLVVVK++ETQG R +K RG+AMK+MTLHFL PVDM KVPCG++GEGYR
Sbjct: 691 TTPGSNGEDVLAQMIRILGRIEGGIQESLMCLKNLQGPNYPYPHLVVVKEIETQGNRGLLTKARGIAMKDMTLHFLFPVDMSKVPCGVDGEGYR 784
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 127 bits (318), Expect = 3.160e-31 Identity = 80/156 (51.28%), Postives = 97/156 (62.18%), Query Frame = 2
Query: 2 AAAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLLERI----------AATVDRIEGGIQESIMCLKRLQAPNYPYPHLVVVKKMETQG--------KRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AAA++LV +VDIRLDR VIF++VKARF +E +Y FS + S+ E+ LL +I +D + QES+M LK LQAPNY YP LVVVKK G KR PSKLRG+ K+MTLHFLCPVDM +VPCG GEGYR
Sbjct: 1008 AAAIDLVCLVDIRLDR-----DVIFREVKARFVVLESQY-FSCPTGSSKTEDELLRKIEDMAIAMKVMTGRLDTVLESTQESLMRLKNLQAPNYLYPRLVVVKKDGNGGRSSRATGWKRCLPSKLRGMGKKDMTLHFLCPVDMTEVPCGPGGEGYR 1157
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 126 bits (317), Expect = 4.080e-31 Identity = 76/166 (45.78%), Postives = 101/166 (60.84%), Query Frame = 2
Query: 2 AAAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLLERI---------------------AATVDRIEGGIQESIMCLKRLQAPNYPYPHLVVVKKM-------ETQGKRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AAA++LVR VDIRLDR VIF++VKARF +++ +Y+ S + SQ+E L+ +I + +D++ QES+M ++ LQAPNY YP LVVVK++ + GK+S SKLR L K+MTLHFLCPVDM KVPCG GEGYR
Sbjct: 491 AAAIDLVRFVDIRLDR-----DVIFKEVKARFDDLDSQYSLSCPTDPSQEEGELIRKIDDVARAVRSVKKEMKDGFIMISERLDKVLESTQESLMRIRNLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYR 651
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 117 bits (294), Expect = 5.320e-28 Identity = 75/169 (44.38%), Postives = 98/169 (57.99%), Query Frame = 2
Query: 2 AAAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLLERI------------------------AATVDRIEGGIQESIMCLKRLQAPNYPYPHLVVVKKM-------ETQGKRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AAA++L+RMVDIRLDR GVI ++VKARF +E +Y F+ + S DE+ + ++ A +D++ QES+ LK LQAPNY YP LVVVK++ + GK+S SKLRGL K+M LHFLCPVDM VPCG GEGY+
Sbjct: 724 AAAIDLIRMVDIRLDR-----GVIDREVKARFDVLESQY-FTCPAGSSTDEDEFVRKMDEVKAEXXXXXXXXXXXXXXXXXXAGRLDKVLESTQESLARLKNLQAPNYHYPRLVVVKEVGSHGTSSKAHGKKSMLSKLRGLGKKDMRLHFLCPVDMTTVPCGYGGEGYQ 886
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 117 bits (292), Expect = 9.830e-28 Identity = 77/195 (39.49%), Postives = 99/195 (50.77%), Query Frame = 2
Query: 2 AAAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLLERIAATVDRIEGGI--------------------------------------------------QESIMCLKRLQAPNYPYPHLVVVKKM-------ETQGKRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AAA++LVR VDIRLDR VIF DVKARF +++ +Y+ S + SQ+E L+ +I ++GG +ES+M ++ LQAPNY YP LVVVK++ + GK+S SKLR L K+MTLHFLCPVDM KVPCG GEGYR
Sbjct: 630 AAAIDLVRFVDIRLDR-----DVIFNDVKARFDDLDSQYSLSCPTDPSQEEGELIRKIDDVATAVKGGFAEVEGGVSNLKGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLESTKESLMRIRNLQAPNYRYPRLVVVKEVGADGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYR 819
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 117 bits (292), Expect = 9.930e-28 Identity = 76/209 (36.36%), Postives = 103/209 (49.28%), Query Frame = 2
Query: 2 AAAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLLERIAATVDRIEGGI----------------------------------------------------------------QESIMCLKRLQAPNYPYPHLVVVKKM-------ETQGKRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AAA++L+RMVDIR+DR G IF +V RF ++G Y+F GQ+ S+ ++GL + + + ++GG+ QES+M LK LQAPNY YP LVVVK++ + GK+S +KLRGLA K+MTLHFLCPVDM +VPCG GEG+R
Sbjct: 744 AAAIDLLRMVDIRMDR-----GEIFDEVMERFDALKGHYSFDGQAGSSKKKDGLTRMVESIIKTMKGGVDDXXXXXXXXXXXXXXVQGEVRRGFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLESTQESLMRLKNLQAPNYLYPRLVVVKEVGSGGTSSKAHGKKSMLTKLRGLAKKDMTLHFLCPVDMTRVPCGYGGEGHR 947
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE) HSP 1 Score: 109 bits (273), Expect = 3.440e-25 Identity = 77/198 (38.89%), Postives = 96/198 (48.48%), Query Frame = 2
Query: 5 AAVELVRMVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEG-LLERIAATVDRIEGGI----------------------------------------------------QESIMCLKRLQAPNYPYPHLVVVKKMETQG--------KRSPPSKLRGLAMKNMTLHFLCPVDMEKVPCGMNGEGYR 415
AA++LVR+VDIRL+R VIF VKARF ++E +Y+F+ + EEG L+ +I ++G I QES+M L+ LQAPNY YP LVVVK+ G KR PS LRGL K+MTLHFLCPVDM KVPCG G+GYR
Sbjct: 458 AAIDLVRLVDIRLNR-----DVIFNGVKARFDDLESQYSFTLPTHDRSKEEGELIRKIDGVATAVQGAINEVKGEMKEGFXXXXXXXXXXXXXXXTELRDVKDEDGLGMMTGRLDKVLASTQESVMRLRELQAPNYLYPRLVVVKEAGIDGRSSRATGWKRCLPSILRGLGKKDMTLHFLCPVDMTKVPCGYGGDGYR 650 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1604.3478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1604.3478.1 >prot_E-siliculosus-1a_F_contig1604.3478.1 ID=prot_E-siliculosus-1a_F_contig1604.3478.1|Name=mRNA_E-siliculosus-1a_F_contig1604.3478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=130bp MVDIRLDRAITPTGVIFQDVKARFANMEGRYTFSGQSTMSQDEEGLLERIback to top mRNA from alignment at E-siliculosus-1a_F_contig1604:22596..24270+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1604.3478.1 ID=mRNA_E-siliculosus-1a_F_contig1604.3478.1|Name=mRNA_E-siliculosus-1a_F_contig1604.3478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1675bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1604:22596..24270+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1604:22596..24270+ >mRNA_E-siliculosus-1a_F_contig1604.3478.1 ID=mRNA_E-siliculosus-1a_F_contig1604.3478.1|Name=mRNA_E-siliculosus-1a_F_contig1604.3478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1604:22596..24270+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |