mRNA_E-siliculosus-1a_F_contig1603.3472.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1603.3472.1
Unique NamemRNA_E-siliculosus-1a_F_contig1603.3472.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: D7G1E7_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E7_ECTSI)

HSP 1 Score: 465 bits (1196), Expect = 2.160e-163
Identity = 239/266 (89.85%), Postives = 244/266 (91.73%), Query Frame = 1 
Query:    1 MFRRRQFHTKPTASDSL-GGAKTLRGTKEEENEEKEGRERAVGFQFKEVGTLANRAKNPVVFLDVSIGGVPARLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSN-RQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRPSVYIQASYTMLPEVGTDDLALLP 792
            MFRRRQFHTKPTASDSL GGAKTLR TKEEENEEKEGR+RAVGFQFKEVGTLANRAKNPVVFLDVSIGGVPARLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIA  T D  KT +LS   +E   +  R +KRHDGTGRASIYGGHFADENFVLRHTG GVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFD LEKLEACGVEGGRPSVYIQASYT LP VG DDLALLP
Sbjct:    1 MFRRRQFHTKPTASDSLVGGAKTLRDTKEEENEEKEGRDRAVGFQFKEVGTLANRAKNPVVFLDVSIGGVPARLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIASDTTDKQKTFALSKPTKESTAERWRSSKRHDGTGRASIYGGHFADENFVLRHTGPGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDALEKLEACGVEGGRPSVYIQASYTKLPAVGADDLALLP 266
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: A0A6H5JFC7_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC7_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 3.010e-104
Identity = 186/274 (67.88%), Postives = 188/274 (68.61%), Query Frame = 1 
Query:   82 EEENEEKEGRERAVGFQFKEVGTLANRAKNPV-----------------------------------------------VFLDVSIGGVPARLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRPSVYIQASYTMLPE 762
            +EENEEKEGR RAVGFQFKEVGTLANRAKNPV                                               +FLDVSIGGVPARLTFELRKDIVPRTAENFRSICAGDR   QDGTRLSYQGCVFHRVIKDFAVIGGDIA                           RHDGTG ASIYGGHFADENFVLRHTG GVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFD LEKLEA G EGGRPSVYIQAS  ML E
Sbjct:   21 QEENEEKEGRGRAVGFQFKEVGTLANRAKNPVGERYRDVGTYADVVGVPARHVNPGHTPVHSLRARPPGNWGSKTNARHLFLDVSIGGVPARLTFELRKDIVPRTAENFRSICAGDR---QDGTRLSYQGCVFHRVIKDFAVIGGDIA---------------------------RHDGTGIASIYGGHFADENFVLRHTGPGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDALEKLEASGAEGGRPSVYIQASNAMLRE 264
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: A0A7S3Y1Y7_HETAK (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y7_HETAK)

HSP 1 Score: 179 bits (455), Expect = 1.540e-52
Identity = 91/190 (47.89%), Postives = 117/190 (61.58%), Query Frame = 1 
Query:  160 RAKNPVVFLDVSIGGVPA-RLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRPS 726
            R  N +++ D++I G  A RLTFELR DI P+T ENF+++  G+R  T+DG +LSY+G VFHR++KD+ + GGDI                              DGTGR S +G  F DENF+LRHTG GVL+ CN+GPD+N S F IT VE PWL+GR V FGCL +  S D L K+E  G + GRPS
Sbjct:   20 RHLNNIMYFDMTIDGEDAGRLTFELRADIAPKTCENFKALITGERGITEDGVKLSYEGSVFHRIVKDYLIQGGDIV---------------------------NQDGTGRLSSFGEPFEDENFILRHTGPGVLSMCNSGPDSNGSQFFITLVETPWLDGRHVVFGCLVDQPSLDTLAKIEQVGHDCGRPS 182
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: A0A7S2VS52_9DINO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VS52_9DINO)

HSP 1 Score: 160 bits (406), Expect = 5.280e-45
Identity = 88/205 (42.93%), Postives = 115/205 (56.10%), Query Frame = 1 
Query:  118 AVGFQFKEVGTLANRA-KNPVVFLDVSIGGVPA-RLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRPS 726
            AV   +   G    RA  NP VF+D++IGG  A R+  ELR+D+ PRTAENFR +C G+R     G +LS +G  FHRV++DF   GGD                             R DGTG  S+YGG FADENF L+H G GVL+  N GP+TNSS F ITT + PWL+G+ V FG +   +  DV+ K++ C    G+P+
Sbjct:   20 AVARWWVAAGAEGRRAMSNPQVFMDITIGGESAGRIVLELRRDVAPRTAENFRCLCTGERGVGVSGKKLSLKGSRFHRVLEDFVCQGGDFT---------------------------REDGTGGESVYGGRFADENFELKHGGPGVLSMANGGPNTNSSQFFITTRKTPWLDGKHVVFGSVV--QGMDVVAKIQGCATLSGKPT 195
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: A0A7S2GBA6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBA6_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.260e-44
Identity = 84/204 (41.18%), Postives = 119/204 (58.33%), Query Frame = 1 
Query:  127 FQFKEVGTLANRAKNPVVFLDVSIGGVPA-RLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGH----FADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRP 723
            +Q +E     +R+ NP+V+LD+SIG  P+ RL  ELR D+VPR AENFRS+C G+    +DGT + ++G +FHR++KD    GGD++                           + DGT  AS++  +    FADENF+LRHTG GVL+  N+GPDTN S F ++ VE  W++   V FGC+ N +S  VL  +E  G + GRP
Sbjct:   37 YQHQEGAQKGDRSLNPIVYLDISIGNEPSGRLMIELRADLVPRAAENFRSLCTGEHPKHKDGTAMHFKGTMFHRIVKDSLCQGGDLS---------------------------QGDGTWSASVFRDNADCLFADENFILRHTGPGVLSMANSGPDTNGSQFYLSFVETAWMDEHHVVFGCVCNQDSLTVLYDIERQGSQSGRP 213
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: A0A812VDW2_9DINO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812VDW2_9DINO)

HSP 1 Score: 159 bits (401), Expect = 5.150e-44
Identity = 85/195 (43.59%), Postives = 113/195 (57.95%), Query Frame = 1 
Query:  145 GTLANRAKNPVVFLDVSIGGVPA-RLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRPS 726
            GT+A     PVVF D+SIGG PA R+T ELR D+ P+TAENFR++C G++   + G  L ++G  FHRVI DF   GGD                               +GTG  SIYG  FADENF L+HTG G+L+  NAGP+TN S F + TV+  WL+G+ V FG +   +  DV++K+EA G + G+ S
Sbjct:   53 GTIA--MAKPVVFFDMSIGGTPAGRITMELRADVAPKTAENFRALCTGEKGTGKSGKPLHFKGSAFHRVIPDFMCQGGDFTAG---------------------------NGTGGESIYGSKFADENFTLKHTGPGILSMANAGPNTNGSQFFLCTVKTQWLDGKHVVFGSVT--DGMDVVKKIEAVGSQSGKTS 216
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: A0A8B7BTP3_PHODC (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7BTP3_PHODC)

HSP 1 Score: 157 bits (396), Expect = 5.610e-44
Identity = 84/189 (44.44%), Postives = 109/189 (57.67%), Query Frame = 1 
Query:  163 AKNPVVFLDVSIGGVPA-RLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRPS 726
            A NP+V+LDV+I GVPA R+  EL  D+ P+TAENFR++C G++   + G  L Y+GC FHRVI  F   GGD                               +GTG  SIYGG FADENFV +HTG GV++  N+GP+TN S F I T + PWL+GR V FG +   +  DV+  +E  G +GGR S
Sbjct:    2 ASNPMVYLDVTINGVPAGRIVIELFADVTPKTAENFRALCTGEKGLGRSGKPLHYKGCPFHRVIPGFVSQGGDFTAG---------------------------NGTGGXSIYGGKFADENFVKKHTGPGVVSMANSGPNTNGSQFFICTTKTPWLDGRHVVFGHVV--DGMDVVRAMEEVGSQGGRTS 161
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: C3YR41_BRAFL (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YR41_BRAFL)

HSP 1 Score: 156 bits (395), Expect = 6.800e-44
Identity = 83/181 (45.86%), Postives = 106/181 (58.56%), Query Frame = 1 
Query:  178 VFLDVSIGGVPA-RLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGG 717
            VF D++IGG PA R+ FELR D+VP+TAENFR++C G++     G  L Y+G +FHR I  F V GGDI                              +G+G  SIYGG F DENF L HTG G+L+  NAGPDTN S F IT V+ PWL+G+ V FG +   + +DV+EK+EA G   G
Sbjct:    2 VFFDITIGGTPAGRIVFELRADVVPKTAENFRALCTGEKGRGTWGEPLHYKGVIFHRCIPGFMVQGGDIQFN---------------------------NGSGGESIYGGDFPDENFKLNHTGPGILSMANAGPDTNGSQFFITVVQTPWLDGKHVVFGKVI--QGYDVVEKIEAAGSPSG 153
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: A0A196SPU3_BLAHN (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SPU3_BLAHN)

HSP 1 Score: 157 bits (397), Expect = 8.980e-44
Identity = 85/192 (44.27%), Postives = 106/192 (55.21%), Query Frame = 1 
Query:  151 LANRAKNPVVFLDVSIGGVP-ARLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRP 723
             A+RA NP+VF+D S GG    R+ FELR D+VP+TAENFR +C G++   + G +L Y+GC  HRVI  F   GGD                               +GTG  SIYG  F DENF L+HTG G+L+  N GP+TN S F ITTV  PWLNG  V FG +   +  +VL+ LE  G E G P
Sbjct:   22 FASRADNPLVFMDFSAGGKDMGRIVFELRADVVPKTAENFRCLCTGEKGVGKSGKKLHYKGCTLHRVIPQFMCQGGDFT---------------------------NGNGTGGESIYGERFPDENFTLKHTGPGLLSMANCGPNTNGSQFFITTVPCPWLNGHHVVFGEVK--KGMNVLKSLEMLGTESGSP 184
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BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Match: A0A8J9VHK9_BRALA (PPIA protein n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A8J9VHK9_BRALA)

HSP 1 Score: 158 bits (400), Expect = 9.130e-44
Identity = 85/190 (44.74%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  169 NPVVFLDVSIGGVPA-RLTFELRKDIVPRTAENFRSICAGDRADTQDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQPHRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFMITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRPSVYI 735
            NP VF D++IGG PA R+ FELR D+VP+TAENFR++C G++     G  L Y+G +FHR I  F V GGDI                              +G+G  SIYGG F DENF L HTG+G+L+  NAGPDTN S F IT  +  WL+GR V FG +     +DV+EK+EA G   G  S  +
Sbjct:   67 NPTVFFDITIGGTPAGRIVFELRADVVPKTAENFRALCTGEKGRGTWGEPLHYKGVIFHRCIPGFMVQGGDIQFN---------------------------NGSGGESIYGGEFPDENFKLNHTGAGILSMANAGPDTNGSQFFITVEKTAWLDGRHVVFGKVIRG--YDVVEKIEAAGSPNGTTSARV 227
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1603.3472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1E7_ECTSI2.160e-16389.85PPIase cyclophilin-type domain-containing protein ... [more]
A0A6H5JFC7_9PHAE3.010e-10467.88PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S3Y1Y7_HETAK1.540e-5247.89Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hetero... [more]
A0A7S2VS52_9DINO5.280e-4542.93Peptidyl-prolyl cis-trans isomerase n=1 Tax=Brandt... [more]
A0A7S2GBA6_9STRA1.260e-4441.18Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A812VDW2_9DINO5.150e-4443.59Peptidyl-prolyl cis-trans isomerase n=1 Tax=Symbio... [more]
A0A8B7BTP3_PHODC5.610e-4444.44Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phoeni... [more]
C3YR41_BRAFL6.800e-4445.86Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A196SPU3_BLAHN8.980e-4444.27Peptidyl-prolyl cis-trans isomerase n=2 Tax=Blasto... [more]
A0A8J9VHK9_BRALA9.130e-4444.74PPIA protein n=2 Tax=Branchiostoma TaxID=7737 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1603contigE-siliculosus-1a_F_contig1603:8591..12485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size864
Model size898
Exons7
Ec32 orthologEc-07_000740.1
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG0652@1,KOG0865@2759
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
Seed eggNOG ortholog2880.D7G1E7
Seed ortholog evalue1.2e-128
Seed ortholog score466.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1603.3472.1prot_E-siliculosus-1a_F_contig1603.3472.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1603 8591..12451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928120.6896482-CDS-E-siliculosus-1a_F_contig1603:8590..86741622928120.6896482-CDS-E-siliculosus-1a_F_contig1603:8590..8674Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 8591..8674 +
1696318812.027859-CDS-E-siliculosus-1a_F_contig1603:8590..86741696318812.027859-CDS-E-siliculosus-1a_F_contig1603:8590..8674Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 8591..8674 +
1622928120.7020118-CDS-E-siliculosus-1a_F_contig1603:9460..95541622928120.7020118-CDS-E-siliculosus-1a_F_contig1603:9460..9554Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 9461..9554 +
1696318812.03983-CDS-E-siliculosus-1a_F_contig1603:9460..95541696318812.03983-CDS-E-siliculosus-1a_F_contig1603:9460..9554Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 9461..9554 +
1622928120.7155957-CDS-E-siliculosus-1a_F_contig1603:10032..101441622928120.7155957-CDS-E-siliculosus-1a_F_contig1603:10032..10144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 10033..10144 +
1696318812.0558064-CDS-E-siliculosus-1a_F_contig1603:10032..101441696318812.0558064-CDS-E-siliculosus-1a_F_contig1603:10032..10144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 10033..10144 +
1622928120.7266273-CDS-E-siliculosus-1a_F_contig1603:10359..104571622928120.7266273-CDS-E-siliculosus-1a_F_contig1603:10359..10457Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 10360..10457 +
1696318812.0635872-CDS-E-siliculosus-1a_F_contig1603:10359..104571696318812.0635872-CDS-E-siliculosus-1a_F_contig1603:10359..10457Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 10360..10457 +
1622928120.7466853-CDS-E-siliculosus-1a_F_contig1603:10696..107751622928120.7466853-CDS-E-siliculosus-1a_F_contig1603:10696..10775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 10697..10775 +
1696318812.0716658-CDS-E-siliculosus-1a_F_contig1603:10696..107751696318812.0716658-CDS-E-siliculosus-1a_F_contig1603:10696..10775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 10697..10775 +
1622928120.7714593-CDS-E-siliculosus-1a_F_contig1603:11159..113071622928120.7714593-CDS-E-siliculosus-1a_F_contig1603:11159..11307Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 11160..11307 +
1696318812.0822895-CDS-E-siliculosus-1a_F_contig1603:11159..113071696318812.0822895-CDS-E-siliculosus-1a_F_contig1603:11159..11307Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 11160..11307 +
1622928120.7909327-CDS-E-siliculosus-1a_F_contig1603:12202..124511622928120.7909327-CDS-E-siliculosus-1a_F_contig1603:12202..12451Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 12203..12451 +
1696318812.0937328-CDS-E-siliculosus-1a_F_contig1603:12202..124511696318812.0937328-CDS-E-siliculosus-1a_F_contig1603:12202..12451Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1603 12203..12451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928120.8186893-UTR-E-siliculosus-1a_F_contig1603:12451..124851622928120.8186893-UTR-E-siliculosus-1a_F_contig1603:12451..12485Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1603 12452..12485 +
1696318812.1028028-UTR-E-siliculosus-1a_F_contig1603:12451..124851696318812.1028028-UTR-E-siliculosus-1a_F_contig1603:12451..12485Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1603 12452..12485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1603.3472.1

>prot_E-siliculosus-1a_F_contig1603.3472.1 ID=prot_E-siliculosus-1a_F_contig1603.3472.1|Name=mRNA_E-siliculosus-1a_F_contig1603.3472.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=288bp
MFRRRQFHTKPTASDSLGGAKTLRGTKEEENEEKEGRERAVGFQFKEVGT
LANRAKNPVVFLDVSIGGVPARLTFELRKDIVPRTAENFRSICAGDRADT
QDGTRLSYQGCVFHRVIKDFAVIGGDIAVTTADTLKTLSLSNRQERNRQP
HRIAKRHDGTGRASIYGGHFADENFVLRHTGSGVLTCCNAGPDTNSSAFM
ITTVEAPWLNGRSVAFGCLANAESFDVLEKLEACGVEGGRPSVYIQASYT
MLPEVGTDDLALLPSLPSCLPLLHRPAFRIFSNAKCS*
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mRNA from alignment at E-siliculosus-1a_F_contig1603:8591..12485+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1603.3472.1 ID=mRNA_E-siliculosus-1a_F_contig1603.3472.1|Name=mRNA_E-siliculosus-1a_F_contig1603.3472.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3895bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1603:8591..12485+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCCGCCGTCGGCAATTTCACACAAAGCCAACTGCATCGGATTCTCT
TGGAGGGGCGAAAACGCTTCGCGGCACTAAAGAGGTACGCTGATTGCGAA
ACCTTTCACGACGGCATGGGCACCATAACCCTCAGAATCCCAAAATATGT
TGCATTTCGTCTGCACTAGTTTGCACCACTCCATGAACGTGCTCGGCACG
GTAAGTCTAGCGTATCCAAGCGTGTCTGGCCTCAGTTGTTTCATCGCAAA
CGAAACTGAGCGCTATTTCGGACTAAGGTAGGTCGCCGTGCCAGCAGGCT
TGGGGTGCAAGAGGCACATACGTTTTTCCCGTATTCTCGGCGACCTTTTG
GAAGCGCGCCGAGGTTGAAGTCTACTAGTCTACTCACAGCCATCAAGAGT
CCTCCCACCAGAACGTGGCTTTGCAGCAACGATTCTTCGTTGTTTCTGCC
TCTTTTTCCTGGCGAGACCGTCCTCCTTGATTACACTGCCACAGCACTCT
GTTCAAATGAGAGATGATTCTCTTGATTTCGAGTTCGGGGGCAGACATTG
GCTAGGTTGCGTCTCGGACGTAGCTGGAACGTCCTTGGTTGACGCACGCA
CGAAATGGTGCTGATTTTCTCCGTTTTCGCCTCCATAGATGTGCAGTACT
AGAGTGGTTTAGCTTTCGCTGACATTACCCGTCGGCTAGATGCATAGTCT
ATACGCGGACGTTGTTCTTCCCCCACTTTTAACAACAACGGCTACGAGCT
TGGAGAAGTCAGACACAGTCCGTCGGCGACGGCTCGATTACAGTTTGCGC
ACATGACCTGCTATGATTTCCAAGACTACGATCTTTGCGACGGGCTTGTT
GCCAATTTGTCTCCCATCAGGAGGAGAACGAAGAAAAGGAAGGTAGAGAG
CGCGCGGTCGGGTTCCAATTCAAGGAAGTTGGAACACTCGCCAATCGAGC
AAAAAACCCCGTCGGTAAGAGTACAGTATTGGTACCTTCACTGATGTCGT
TGGTGTTGCTGCCCGGCATGTGAATCCTGGACACACTTTGGTGCATAGTC
TTCCTGCCCGTCCGCCTGGCAACTGGGGCAACAAGACCAAAGCGAGGCAC
CGCCGAAATCGCTCGCGAGTTAGAAAAATTACCATCGACGGAAACCTTAA
GAGCACCCACAGAAGATAGTGCAATAGCAACACGTTTCGCTGTGACACGC
CGATAGCAATATTGTCCTAGCATTTGGAATTGTCGCAATCGTCACCTACG
GGTTAGACGACGGCGAACCGTGAACGTGTTGGGTAGGTACGTGTTTGATG
CCAAATGACTGTCACGCTTTGGCCAGACGAGCGCACCCGAAATCGACCAA
ACAAACCATCATGAACAAGAACAAGAGCAAGAACAGCAGCAGCAAAGTAT
CACAATCTAATACACAGCGGTTTCCTCGCTCTTGTGGCGCAGTGTTTCTG
GACGTATCGATCGGCGGCGTACCTGCGAGGCTGACCTTCGAGCTGCGGAA
GGACATCGTACCTCGTACGGCTGAGAACTTCAGATCGATATGCGCGGGCG
ATCGGTAAGATTGTATCGGCGAAGGGCGTGGTATCGGGAGTTGAGAGGGA
AAAAGGCATTTCAAGTAGAGGTGGGTGTCCATGTGTAGCAAGTGACAGAG
GAGGTGGACACAAGCAGTGGACGTGTTCCAACAGCTATTATCAGCGCCAA
CAACGCGATTGCAGACGTCGAAAATCACATCAACTAATTGACTCCGTCCT
CTCAACCTTTTCGTCAAAGGGCCGACACTCAAGACGGCACTCGGCTCAGC
TATCAAGGATGCGTGTTTCACCGGGTCATCAAGGATTTCGCTGTAATAGG
CGGAGACATTGCCGTGAGTGATGCGGTCATTGACCTTGGAACACCCACAG
GGACACACAAAACATTTGCGAAGCGTCGAAAACGAAACGGTTGTGGATGC
ATAGATACATTGGGTTGGGGTGCGGCAGTAGCACGTTGCAACTCTAATAT
TTTGCGCCTTTCCCCCCGAAATTTGTCGAACGTGTCCGTGTTGGCCCGAC
TTTCAACACGGCTTTTACACGGGTGGTGAACTAGTCGGCAGTTGGACAGG
CTAGAGCCACGGCTGATACGCTGAAAACATTAAGCCTCTCCAATAGGCAA
GAAAGGAATCGACAGCCGCATCGAATAGCGAAGCGGTGGACATCAATGAA
GTTTTCTACCGAGCGTTGGCGCAATTGAAAGGTAGGAGTGGCGCACAGCT
CAGAGTAACAACACATTGGCCGACGCGTCTGAAGACACCAGGGATGAACA
GCCAACCACAAGCGCCCAAACCACGAGGCTTGTGCCAGTGCCATGTCCAC
CACCTAGGGTGGACAAACAGATAGCGGTGAGCCGCAGAGGCAATGCCGAG
ACTGAGAGACACAGCGGTGGGACACCGATGATCGCCGATCCACGCGTGAT
TGCCAATGACTCGCAACAGGTCACTCCCGTGTCTCGATGAAATCTGTTTC
TCGCAACGGTGTGAAACATTTGTCGGCAACGCAACTCCACTGCGGTATCC
TCTCGTGGCGCTTACAGAGGCACGACGGCACAGGGAGAGCGTCGATCTAC
GGCGGACATTTCGCCGACGAAAATTTCGTGCTCAGGCACACGGGGTCCGG
AGTACTGACCTGCTGCAACGCTGGCCCAGACACTAACTCCTCCGCCTTCA
TGATCACGACAGTCGAGGTGCGCCAGTGTCTATATAACGGTGGTGGTGGT
GGGAAACAGGGTGTCTCAAATGTTTGGGGCAGTTTTTATCTCTCTTGTTC
GACTTGGTCTTCATCATTTCTTCCGCGCGCGCGGTTCCTGAAACAAGATA
CAAACTGTGCTGCGGCGTGACGAGAATACAACCGATCGCTTGAAGATCGA
AGTTCGACGTTGTTTTCGAGGTGCGCGCTTGACTATAGAGTCATTGTTCC
TTCCTCATCGGCATCGCCATCGCGAGCGGCCTCAACCGTATAAGAGGAGG
GTGTTGAGGTACATGTTGGTCGTTGTTGTCAAGGAAGAAGGATCCGTTGT
TGATGCAGATGCAGTCCATTGTTGTTGTGGTCATGGGTTTCTGTTGTTTC
TGCAGTCGTTTCAGCTTTGCTGTCGTCGTTGTTGTCCATTTGGTTGTTGT
TTGGTTGTTGTCGCCGTTGTCTTCGCCGTTCTTGTTGTCGTTGCTGTTAA
TTGTGGTTGTTGTCCTCGTCAGAACAGATCGTCTGCGCTCACCGCATTAA
CTCGCCCCCGACCTATACAGAGTAGTCTAGTTACGGTCGTGGACAGGGGG
ATAAAATAAATATCATTATACCGGCTCCCATAACTCAGCTCCCGGTTCGT
TCTACGTGTGGGAACGTTGGAAATATGTTCGGTGTTTCATCTTTCAGCAC
GGTTCGTCGCTGAGCAGCTGCAGGGGCTTTAGAAGTACGCCGTCCTCGCA
GATGCCCGGATCTTGCTGAGTTCTGTAGAGGTCACATTTCCTTGCCTATG
ACGCGACATGCTGGAAGTACTGGTGCCCACTGTGCTGACGTACCAAAATT
TAATCCCTGGATCCTGGCTCTGCACGTATCTCTACTCTAACTCTGGGTAT
GCTCTAACGCAGGCTCCATGGTTGAACGGTCGAAGCGTTGCTTTTGGTTG
CCTCGCCAACGCCGAATCTTTCGACGTCCTGGAAAAGTTGGAAGCCTGCG
GAGTTGAAGGTGGACGCCCTTCTGTCTACATTCAGGCAAGCTACACAATG
TTGCCAGAGGTTGGTACCGATGATTTGGCCTTGTTGCCGTCACTGCCATC
ATGTTTGCCACTTCTTCACCGTCCAGCCTTCCGGATTTTTTCGAACGCGA
AATGCAGTTGATGCGACGAAGGCAGCAACAAAACGCCTACAGTTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1603:8591..12485+

>mRNA_E-siliculosus-1a_F_contig1603.3472.1 ID=mRNA_E-siliculosus-1a_F_contig1603.3472.1|Name=mRNA_E-siliculosus-1a_F_contig1603.3472.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1728bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1603:8591..12485+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCCGCCGTCGGCAATTTCACACAAAGCCAACTGCATCGGATTCTCT
TGGAGGGGCGAAAACGCTTCGCGGCACTAAAGAGATGTTCCGCCGTCGGC
AATTTCACACAAAGCCAACTGCATCGGATTCTCTTGGAGGGGCGAAAACG
CTTCGCGGCACTAAAGAGGAGGAGAACGAAGAAAAGGAAGGTAGAGAGCG
CGCGGTCGGGTTCCAATTCAAGGAAGTTGGAACACTCGCCAATCGAGCAA
AAAACCCCGTCGGAGGAGAACGAAGAAAAGGAAGGTAGAGAGCGCGCGGT
CGGGTTCCAATTCAAGGAAGTTGGAACACTCGCCAATCGAGCAAAAAACC
CCGTCGTGTTTCTGGACGTATCGATCGGCGGCGTACCTGCGAGGCTGACC
TTCGAGCTGCGGAAGGACATCGTACCTCGTACGGCTGAGAACTTCAGATC
GATATGCGCGGGCGATCGTGTTTCTGGACGTATCGATCGGCGGCGTACCT
GCGAGGCTGACCTTCGAGCTGCGGAAGGACATCGTACCTCGTACGGCTGA
GAACTTCAGATCGATATGCGCGGGCGATCGGGCCGACACTCAAGACGGCA
CTCGGCTCAGCTATCAAGGATGCGTGTTTCACCGGGTCATCAAGGATTTC
GCTGTAATAGGCGGAGACATTGCCGTGAGGCCGACACTCAAGACGGCACT
CGGCTCAGCTATCAAGGATGCGTGTTTCACCGGGTCATCAAGGATTTCGC
TGTAATAGGCGGAGACATTGCCGTGACCACGGCTGATACGCTGAAAACAT
TAAGCCTCTCCAATAGGCAAGAAAGGAATCGACAGCCGCATCGAATAGCG
AAGCGCCACGGCTGATACGCTGAAAACATTAAGCCTCTCCAATAGGCAAG
AAAGGAATCGACAGCCGCATCGAATAGCGAAGCGGCACGACGGCACAGGG
AGAGCGTCGATCTACGGCGGACATTTCGCCGACGAAAATTTCGTGCTCAG
GCACACGGGGTCCGGAGTACTGACCTGCTGCAACGCTGGCCCAGACACTA
ACTCCTCCGCCTTCATGATCACGACAGTCGAGGCACGACGGCACAGGGAG
AGCGTCGATCTACGGCGGACATTTCGCCGACGAAAATTTCGTGCTCAGGC
ACACGGGGTCCGGAGTACTGACCTGCTGCAACGCTGGCCCAGACACTAAC
TCCTCCGCCTTCATGATCACGACAGTCGAGGCTCCATGGTTGAACGGTCG
AAGCGTTGCTTTTGGTTGCCTCGCCAACGCCGAATCTTTCGACGTCCTGG
AAAAGTTGGAAGCCTGCGGAGTTGAAGGTGGACGCCCTTCTGTCTACATT
CAGGCAAGCTACACAATGTTGCCAGAGGTTGGTACCGATGATTTGGCCTT
GTTGCCGTCACTGCCATCATGTTTGCCACTTCTTCACCGTCCAGCCTTCC
GGATTTTTTCGAACGCGAAATGCAGTTGAGCTCCATGGTTGAACGGTCGA
AGCGTTGCTTTTGGTTGCCTCGCCAACGCCGAATCTTTCGACGTCCTGGA
AAAGTTGGAAGCCTGCGGAGTTGAAGGTGGACGCCCTTCTGTCTACATTC
AGGCAAGCTACACAATGTTGCCAGAGGTTGGTACCGATGATTTGGCCTTG
TTGCCGTCACTGCCATCATGTTTGCCACTTCTTCACCGTCCAGCCTTCCG
GATTTTTTCGAACGCGAAATGCAGTTGA
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