mRNA_E-siliculosus-1a_F_contig16015.3464.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig16015.3464.1
Unique NamemRNA_E-siliculosus-1a_F_contig16015.3464.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: A0A5S3PXH0_9FLAO (Acyl-CoA--6-aminopenicillanic acid acyl-transferase n=2 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PXH0_9FLAO)

HSP 1 Score: 351 bits (900), Expect = 7.040e-116
Identity = 180/229 (78.60%), Postives = 204/229 (89.08%), Query Frame = 1
Query:    1 ASNQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKINTTVSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            +SNQL+CSNHFQSAAY EDKKNQ HILESHSQYRY+RMEELL ET+KVTP  VV+ILRNREGL  +KIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVF    K   +V+   LNIQKDPFLET+AYQNYERYRS RD+I+KAISE+TH++Q LLS+F+ALNP+FWEAHYLVGKYNL+KGYD +AL +F +A+ KEITT+ DRE VEKHI+KL
Sbjct:  319 SSNQLICSNHFQSAAYAEDKKNQNHILESHSQYRYKRMEELLEETEKVTPIKVVEILRNREGLEEDKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFKDGNK-KLSVASMALNIQKDPFLETEAYQNYERYRSFRDEIQKAISEETHLEQKLLSDFTALNPNFWEAHYLVGKYNLDKGYDTLALIAFQEAQTKEITTLPDREAVEKHIKKL 546          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: A0A831VTJ5_9FLAO (Acyl-CoA--6-aminopenicillanic acid acyl-transferase n=2 Tax=root TaxID=1 RepID=A0A831VTJ5_9FLAO)

HSP 1 Score: 324 bits (831), Expect = 3.590e-105
Identity = 165/229 (72.05%), Postives = 196/229 (85.59%), Query Frame = 1
Query:    7 NQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKIN--TTVSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            N+L+CSNHFQSAAY EDKKNQKHI ESHSQYRYERMEELL ET K+TPKI VDILR+++GL+  +IGYGNEKALNQ+LAHHGIVFQPEDL VWVSS+PYQ+GEFVAYDLNE+F  +   N  T+ S ++LNI KDPFL+T A+Q+Y+RYR+LR++I KAIS   HVDQ  L EF  +NPDFWEA+YLVGKYN  KGYDR+ALN+FL+AE KEITTV DR+ VE++IRKL
Sbjct:  348 NELICSNHFQSAAYAEDKKNQKHIFESHSQYRYERMEELLEETPKMTPKIAVDILRDKKGLNDERIGYGNEKALNQLLAHHGIVFQPEDLKVWVSSNPYQLGEFVAYDLNEIFDGNNFPNKVTSQSDSKLNIPKDPFLKTLAFQHYQRYRALRNQISKAISLNAHVDQKTLQEFIQVNPDFWEAYYLVGKYNYTKGYDRLALNAFLEAETKEITTVPDRDEVERYIRKL 576          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: A0A1G6WCK7_9FLAO (Predicted choloylglycine hydrolase n=2 Tax=Pricia antarctica TaxID=641691 RepID=A0A1G6WCK7_9FLAO)

HSP 1 Score: 310 bits (795), Expect = 9.130e-100
Identity = 162/231 (70.13%), Postives = 187/231 (80.95%), Query Frame = 1
Query:    1 ASNQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKINT--TVSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            +SNQL+CSNHFQSAAY  DKKNQKHILESHSQYRYERMEELL E  K+TPKI VDILR+++GL    IGYGNEKALNQ+LAHHGIVFQPEDL VWVSS+PYQ+GEFVAYDL E+F K        ++S++ELNI KDPF+ T AYQ+Y  YR LR +I   IS   HV Q LL +F  LNPDFWEA+YLVGKYN EKGYDR+ALN+FL+AE KEITTV DR+ +E +IRKL
Sbjct:  346 SSNQLICSNHFQSAAYVNDKKNQKHILESHSQYRYERMEELLDEKPKITPKIAVDILRDKKGLDEKHIGYGNEKALNQLLAHHGIVFQPEDLKVWVSSNPYQLGEFVAYDLKEIFGKKDGDGRVKSMSEDELNIPKDPFVNTLAYQHYMDYRKLRKQIVDEISSDGHVGQNLLQKFILLNPDFWEAYYLVGKYNYEKGYDRLALNAFLEAEAKEITTVPDRKEIEHYIRKL 576          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: A0A1M6CJL5_9FLAO (Predicted choloylglycine hydrolase n=1 Tax=Pseudozobellia thermophila TaxID=192903 RepID=A0A1M6CJL5_9FLAO)

HSP 1 Score: 310 bits (795), Expect = 1.020e-99
Identity = 160/230 (69.57%), Postives = 192/230 (83.48%), Query Frame = 1
Query:    7 NQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKINTT---VSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            NQL+CSNHFQSAAY +DKKNQ+HILESHSQYRYERM+ELL E  KVTPK  V+ILR++ GL   +IGYGNEKALNQ+LAHHGIVFQPEDL VWVSS+P+QMGEFVAYDLNEVF K+   NT+   VS    NI+KDPF+ T A+++Y RYRSLR+KI  AI+ K  + Q  LSEF+ALNPDFWEAHYLVGKYN E+GYDR+AL +F +A ++EITTV D+EM+EK+I+KL
Sbjct:  349 NQLICSNHFQSAAYAQDKKNQRHILESHSQYRYERMQELLGEGPKVTPKSAVEILRDKRGLDDKRIGYGNEKALNQLLAHHGIVFQPEDLKVWVSSNPFQMGEFVAYDLNEVFYKADS-NTSAVPVSNERENIEKDPFIRTLAFRHYNRYRSLRNKITHAIAAKEKIGQNKLSEFTALNPDFWEAHYLVGKYNYEQGYDRLALKAFQEAAKREITTVPDKEMLEKYIKKL 577          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: A0A2N0FW29_9FLAO (Putative choloylglycine hydrolase n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A2N0FW29_9FLAO)

HSP 1 Score: 310 bits (793), Expect = 1.920e-99
Identity = 159/229 (69.43%), Postives = 189/229 (82.53%), Query Frame = 1
Query:    7 NQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKINTT--VSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            NQL+CSNHFQSAAY  DKKNQKHILESHSQYRYERMEELL ET+KVTP+  V+ILRN+ GL   +IGYGNEKALNQ+LAHHGIVFQPEDL VWVSS+P+Q+GEFVAYDLNEVF+ +   +T   +SK E NI KDPF+ T A+++Y RYR LR++I  AIS +  V+Q  LSE  ALNPDFWEAHYLVGKYN EKGYDR+AL +F +A +KE+TTV D+E +EK I+KL
Sbjct:  347 NQLICSNHFQSAAYAGDKKNQKHILESHSQYRYERMEELLEETEKVTPESAVEILRNKRGLDDQRIGYGNEKALNQLLAHHGIVFQPEDLKVWVSSNPFQLGEFVAYDLNEVFAHAETNSTASVISKQEDNIAKDPFIRTLAFRHYNRYRDLRNEISDAISSEKKVEQNKLSELVALNPDFWEAHYLVGKYNYEKGYDRLALTAFQEAAKKEVTTVPDKEKLEKLIKKL 575          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: A0A223V4A6_9FLAO (Acyl-CoA--6-aminopenicillanic acid acyl-transferase n=3 Tax=Maribacter TaxID=252356 RepID=A0A223V4A6_9FLAO)

HSP 1 Score: 307 bits (787), Expect = 7.370e-99
Identity = 156/227 (68.72%), Postives = 183/227 (80.62%), Query Frame = 1
Query:    7 NQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKINTTVSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            NQL+C+NHFQSAAY +DKKNQKHILESHSQYRYERMEELL ET KV P  VV ILR+++GL   +IGYGNEKALNQ+LAHHGIVFQPEDLLVWVSS+PYQ+GEFVAYDL EVF+     N  +++ +LNI KDPFL+++AY+NYERYR LRD+IE  ISEK H+DQ+ L    ALNP+FWE ++L G YN   GYD VA   F KA  KEITTV DRE VEK++RKL
Sbjct:  326 NQLICANHFQSAAYADDKKNQKHILESHSQYRYERMEELLEETSKVNPTEVVSILRDKQGLDEEQIGYGNEKALNQLLAHHGIVFQPEDLLVWVSSNPYQLGEFVAYDLKEVFNLPKVTNQPIAQTDLNIPKDPFLQSEAYKNYERYRMLRDEIEDDISEKAHIDQSRLENLVALNPNFWEGYFLAGVYNYNMGYDYVAKKYFEKALEKEITTVPDRENVEKYLRKL 552          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: UPI001E5A9408 (C45 family peptidase n=2 Tax=Pareuzebyella sediminis TaxID=2607998 RepID=UPI001E5A9408)

HSP 1 Score: 307 bits (786), Expect = 7.920e-99
Identity = 152/229 (66.38%), Postives = 192/229 (83.84%), Query Frame = 1
Query:    7 NQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKIN--TTVSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            NQL+CSNHFQSAAY +D +NQK I+ESHS+YR++RM ELL E  K+TPKI V+ILR+++GL    IGYGNEKALNQ+LAHHGIVFQPEDLLVWVSS+PYQ+GEFVAYDL EVF K+ +     T+S  EL+I +DPFL+T +YQNYE+YR+LR+KI  AI+++ H++Q LLSEF ALNPDFWE+HYLVG+YN  KGYD +A  +FL+AE+KEITTV DR+ VE +++KL
Sbjct:  310 NQLICSNHFQSAAYADDTRNQKQIMESHSKYRFDRMAELLDENPKITPKIAVNILRDKKGLDEKPIGYGNEKALNQLLAHHGIVFQPEDLLVWVSSNPYQLGEFVAYDLKEVFQKANRFTGAETISNTELSIAEDPFLKTISYQNYEQYRALREKIMTAIAQEGHIEQQLLSEFVALNPDFWESHYLVGRYNYMKGYDTLAYRAFLEAEKKEITTVPDRDRVESYLKKL 538          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: UPI001B3908FC (C45 family autoproteolytic acyltransferase/hydolase n=2 Tax=Maribacter TaxID=252356 RepID=UPI001B3908FC)

HSP 1 Score: 304 bits (779), Expect = 7.780e-98
Identity = 151/228 (66.23%), Postives = 193/228 (84.65%), Query Frame = 1
Query:    4 SNQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKINTTVSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            SNQL+C+NHFQSAAY+ DKKNQKHILESHSQYRYERMEELL ET+KVTPK VVDILR++EGL   KIGYGNEKALNQ+LAHHGIVF+PE+LLVWVSS+PYQ+GEFVAYDLNE+F+ +      V+KN+LNI KDPFL+++ Y+NYE+YR LR++++ AI+++  +++ +L +   LNP+FWEA+YL G YN +KGYDR+AL+ F  A  KEITTV D++ +EK IRK+
Sbjct:  309 SNQLICANHFQSAAYSNDKKNQKHILESHSQYRYERMEELLDETQKVTPKKVVDILRDKEGLDEKKIGYGNEKALNQLLAHHGIVFKPEELLVWVSSNPYQLGEFVAYDLNEIFNTAKDPKHDVAKNDLNIAKDPFLQSKEYKNYEQYRVLRNQVQDAIADEERIEKPVLDQLIELNPNFWEAYYLAGLYNYKKGYDRLALDYFENALEKEITTVPDKKNLEKLIRKI 536          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: A0A5R8M762_9FLAO (Acyl-CoA--6-aminopenicillanic acid acyl-transferase n=4 Tax=Maribacter TaxID=252356 RepID=A0A5R8M762_9FLAO)

HSP 1 Score: 303 bits (776), Expect = 2.380e-97
Identity = 157/228 (68.86%), Postives = 181/228 (79.39%), Query Frame = 1
Query:    4 SNQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKINTTVSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            S+QL+C+NHFQSAAY  DKKNQKHILESHSQYRYERMEELL ET K+ P+ VV ILRN+EGL   KIGYGNEKALNQ+LAHHGIVFQPEDLLVWVSS+PYQ+GEFVAYDLNEVF+ S   +  +++ E NI KDPFL+++AY NYERYR LRD+IE  IS + HV+Q  L +   LNP FWE +YL G YN  KGYD VA   F KA   EITTV DRE VEK++RKL
Sbjct:  313 SDQLICANHFQSAAYANDKKNQKHILESHSQYRYERMEELLKETPKIGPEDVVSILRNKEGLDEEKIGYGNEKALNQLLAHHGIVFQPEDLLVWVSSNPYQLGEFVAYDLNEVFNLSAFADAPIAETERNISKDPFLQSEAYLNYERYRILRDEIEDVISNEAHVEQTKLKKLVQLNPYFWEGYYLAGLYNHNKGYDLVAKGYFEKALELEITTVPDRENVEKYLRKL 540          
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Match: UPI0012699D9C (C45 family autoproteolytic acyltransferase/hydolase n=1 Tax=Pelagihabitans pacificus TaxID=2696054 RepID=UPI0012699D9C)

HSP 1 Score: 301 bits (772), Expect = 1.510e-96
Identity = 153/233 (65.67%), Postives = 184/233 (78.97%), Query Frame = 1
Query:    4 SNQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTPKIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSPYQMGEFVAYDLNEVFSKSFKINT-----TVSKNELNIQKDPFLETQAYQNYERYRSLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRVALNSFLKAERKEITTVMDREMVEKHIRKL 687
            S+QL+CSNHFQSAAY +DK NQKHILESHSQYRYERMEELL E  K+TP+  VD+LR+REGL    IGYGNEKALNQ++AHHGIVFQPEDLLVWVS +PYQ+GEFVAYDLNE+F K    NT     +V++NELNI KDPFLET+AY++YERYR L   + KAI   T ++ ++L  F   NP+FWE HYL+G YN  +GYD +A  +F KAE KEITT+ DRE VE++IRKL
Sbjct:  324 SDQLICSNHFQSAAYADDKDNQKHILESHSQYRYERMEELLEEQSKMTPESAVDLLRDREGLDEKAIGYGNEKALNQLMAHHGIVFQPEDLLVWVSGNPYQLGEFVAYDLNEIFKKR---NTNPQVSSVARNELNIPKDPFLETEAYRDYERYRELSQLVTKAIGTGTRLETSVLKAFEESNPEFWEVHYLIGLYNYNRGYDTLAFQAFQKAETKEITTIPDRERVERYIRKL 553          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16015.3464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S3PXH0_9FLAO7.040e-11678.60Acyl-CoA--6-aminopenicillanic acid acyl-transferas... [more]
A0A831VTJ5_9FLAO3.590e-10572.05Acyl-CoA--6-aminopenicillanic acid acyl-transferas... [more]
A0A1G6WCK7_9FLAO9.130e-10070.13Predicted choloylglycine hydrolase n=2 Tax=Pricia ... [more]
A0A1M6CJL5_9FLAO1.020e-9969.57Predicted choloylglycine hydrolase n=1 Tax=Pseudoz... [more]
A0A2N0FW29_9FLAO1.920e-9969.43Putative choloylglycine hydrolase n=2 Tax=Flavobac... [more]
A0A223V4A6_9FLAO7.370e-9968.72Acyl-CoA--6-aminopenicillanic acid acyl-transferas... [more]
UPI001E5A94087.920e-9966.38C45 family peptidase n=2 Tax=Pareuzebyella sedimin... [more]
UPI001B3908FC7.780e-9866.23C45 family autoproteolytic acyltransferase/hydolas... [more]
A0A5R8M762_9FLAO2.380e-9768.86Acyl-CoA--6-aminopenicillanic acid acyl-transferas... [more]
UPI0012699D9C1.510e-9665.67C45 family autoproteolytic acyltransferase/hydolas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16015contigE-siliculosus-1a_F_contig16015:173..892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size720
Model size720
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
COG Functional cat.S
EggNOG OGs1IJB0@117743,4PKJM@976,COG0457@1,COG0457@2
EggNOG free text desc.Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Seed eggNOG ortholog616991.JPOO01000001_gene3722
Seed ortholog evalue3.2e-74
Seed ortholog score285.0
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928119.021927-CDS-E-siliculosus-1a_F_contig16015:172..8921622928119.021927-CDS-E-siliculosus-1a_F_contig16015:172..892Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16015 173..892 -
1696318811.4624207-CDS-E-siliculosus-1a_F_contig16015:172..8921696318811.4624207-CDS-E-siliculosus-1a_F_contig16015:172..892Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16015 173..892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16015.3464.1prot_E-siliculosus-1a_F_contig16015.3464.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig16015 173..892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig16015.3464.1

>prot_E-siliculosus-1a_F_contig16015.3464.1 ID=prot_E-siliculosus-1a_F_contig16015.3464.1|Name=mRNA_E-siliculosus-1a_F_contig16015.3464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=240bp
ASNQLVCSNHFQSAAYTEDKKNQKHILESHSQYRYERMEELLVETKKVTP
KIVVDILRNREGLSGNKIGYGNEKALNQMLAHHGIVFQPEDLLVWVSSSP
YQMGEFVAYDLNEVFSKSFKINTTVSKNELNIQKDPFLETQAYQNYERYR
SLRDKIEKAISEKTHVDQALLSEFSALNPDFWEAHYLVGKYNLEKGYDRV
ALNSFLKAERKEITTVMDREMVEKHIRKLNSKKFDPRER*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig16015:173..892-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig16015.3464.1 ID=mRNA_E-siliculosus-1a_F_contig16015.3464.1|Name=mRNA_E-siliculosus-1a_F_contig16015.3464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16015:173..892- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAAGTAATCAACTTGTGTGCTCTAACCATTTTCAGAGTGCTGCTTACAC AGAAGATAAAAAGAATCAAAAACACATTTTAGAAAGCCATTCGCAGTATC GCTATGAACGAATGGAAGAATTATTAGTCGAAACTAAAAAAGTCACTCCA AAAATAGTTGTGGATATTCTTAGAAATAGAGAAGGACTTTCAGGAAATAA AATAGGCTATGGCAATGAAAAAGCTTTGAATCAAATGTTGGCCCATCATG GAATCGTTTTTCAACCCGAAGATTTGCTGGTTTGGGTGTCTAGTAGTCCC TATCAAATGGGTGAGTTTGTAGCCTACGATTTAAATGAAGTTTTTTCAAA GAGTTTTAAGATAAATACGACGGTTTCCAAAAATGAATTAAATATTCAAA AAGATCCTTTTTTAGAAACGCAAGCCTATCAAAATTATGAGCGGTATCGT TCGCTTCGAGATAAAATAGAAAAGGCTATTTCTGAGAAAACACATGTAGA CCAAGCATTACTGTCAGAATTCTCCGCCCTTAACCCAGATTTTTGGGAGG CACATTATTTGGTCGGAAAATATAATTTAGAAAAAGGCTACGATCGTGTT GCGTTAAATTCTTTCCTCAAAGCTGAAAGAAAAGAAATTACTACAGTAAT GGATAGGGAAATGGTAGAAAAGCATATCAGAAAACTAAATTCTAAAAAAT TCGACCCCAGAGAACGTTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16015:173..892-

>mRNA_E-siliculosus-1a_F_contig16015.3464.1 ID=mRNA_E-siliculosus-1a_F_contig16015.3464.1|Name=mRNA_E-siliculosus-1a_F_contig16015.3464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1440bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16015:173..892- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAAGTAATCAACTTGTGTGCTCTAACCATTTTCAGAGTGCTGCTTACAC
AGAAGATAAAAAGAATCAAAAACACATTTTAGAAAGCCATTCGCAGTATC
GCTATGAACGAATGGAAGAATTATTAGTCGAAACTAAAAAAGTCACTCCA
AAAATAGTTGTGGATATTCTTAGAAATAGAGAAGGACTTTCAGGAAATAA
AATAGGCTATGGCAATGAAAAAGCTTTGAATCAAATGTTGGCCCATCATG
GAATCGTTTTTCAACCCGAAGATTTGCTGGTTTGGGTGTCTAGTAGTCCC
TATCAAATGGGTGAGTTTGTAGCCTACGATTTAAATGAAGTTTTTTCAAA
GAGTTTTAAGATAAATACGACGGTTTCCAAAAATGAATTAAATATTCAAA
AAGATCCTTTTTTAGAAACGCAAGCCTATCAAAATTATGAGCGGTATCGT
TCGCTTCGAGATAAAATAGAAAAGGCTATTTCTGAGAAAACACATGTAGA
CCAAGCATTACTGTCAGAATTCTCCGCCCTTAACCCAGATTTTTGGGAGG
CACATTATTTGGTCGGAAAATATAATTTAGAAAAAGGCTACGATCGTGTT
GCGTTAAATTCTTTCCTCAAAGCTGAAAGAAAAGAAATTACTACAGTAAT
GGATAGGGAAATGGTAGAAAAGCATATCAGAAAACTAAATTCTAAAAAAT
TCGACCCCAGAGAACGTTAAGCAAGTAATCAACTTGTGTGCTCTAACCAT
TTTCAGAGTGCTGCTTACACAGAAGATAAAAAGAATCAAAAACACATTTT
AGAAAGCCATTCGCAGTATCGCTATGAACGAATGGAAGAATTATTAGTCG
AAACTAAAAAAGTCACTCCAAAAATAGTTGTGGATATTCTTAGAAATAGA
GAAGGACTTTCAGGAAATAAAATAGGCTATGGCAATGAAAAAGCTTTGAA
TCAAATGTTGGCCCATCATGGAATCGTTTTTCAACCCGAAGATTTGCTGG
TTTGGGTGTCTAGTAGTCCCTATCAAATGGGTGAGTTTGTAGCCTACGAT
TTAAATGAAGTTTTTTCAAAGAGTTTTAAGATAAATACGACGGTTTCCAA
AAATGAATTAAATATTCAAAAAGATCCTTTTTTAGAAACGCAAGCCTATC
AAAATTATGAGCGGTATCGTTCGCTTCGAGATAAAATAGAAAAGGCTATT
TCTGAGAAAACACATGTAGACCAAGCATTACTGTCAGAATTCTCCGCCCT
TAACCCAGATTTTTGGGAGGCACATTATTTGGTCGGAAAATATAATTTAG
AAAAAGGCTACGATCGTGTTGCGTTAAATTCTTTCCTCAAAGCTGAAAGA
AAAGAAATTACTACAGTAATGGATAGGGAAATGGTAGAAAAGCATATCAG
AAAACTAAATTCTAAAAAATTCGACCCCAGAGAACGTTAA
back to top