mRNA_E-siliculosus-1a_F_contig160.3452.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig160.3452.1
Unique NamemRNA_E-siliculosus-1a_F_contig160.3452.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: D8LJJ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJJ9_ECTSI)

HSP 1 Score: 551 bits (1421), Expect = 7.420e-196
Identity = 292/301 (97.01%), Postives = 299/301 (99.34%), Query Frame = 3 
Query:  291 MSLNAVQGQGAKEGERSRLFPAPMTGYSNGRSESPTDLEQPPASGGQPDG-DADSESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAVASCVAGMS 1190
            MSLNAVQGQ AKEGER+RLFPAPMTGYSNGRSESPTDLEQPPASGGQPDG DADSESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARL+KYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIREG+VTFGSFALSGIVPLLSYALSPL+SASGSSG+PVSQGVLFLWACLLTAAALFS+GVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAV+SCVAGMS
Sbjct:    1 MSLNAVQGQRAKEGERARLFPAPMTGYSNGRSESPTDLEQPPASGGQPDGGDADSESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLSKYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIREGLVTFGSFALSGIVPLLSYALSPLISASGSSGQPVSQGVLFLWACLLTAAALFSIGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAVSSCVAGMS 301
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: A0A6V1NR54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NR54_HETAK)

HSP 1 Score: 228 bits (582), Expect = 6.580e-69
Identity = 125/234 (53.42%), Postives = 168/234 (71.79%), Query Frame = 3 
Query:  474 KAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAE-GVGSSMFASPPLDEAGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAVAS 1172
            KA VFG LDGVLTSFA++AGA+GGG+G   VL++G S+IVAD LSMG+GEYLSS+A  EY+  ER+REEWEL NHREGEV  MV+ Y+ RGM+R+DA+ V  R+AKYD+ FV+ +M  E G+ ++   + P D   +++EG++ F +FA+ G +PLL Y + P ++   SS E      LF  A  +T   LF +G VKS F ++SW+ SG+ETL+LGGCCAG+AYEIG  V S
Sbjct:   65 KAVVFGGLDGVLTSFAIIAGAAGGGMGVDVVLVLGFSNIVADALSMGVGEYLSSRAHAEYVLSERRREEWELRNHREGEVREMVEIYVNRGMARDDAEVVLNRIAKYDEFFVNVMMAEELGMPANGQVADPAD---TVQEGLIMFAAFAVFGSMPLLGYCVVPALAPDASSSE------LFAVAVFVTLLFLFGLGAVKSHFSTKSWYCSGIETLLLGGCCAGIAYEIGNCVQS 289
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: D8LRS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS5_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 1.040e-67
Identity = 132/250 (52.80%), Postives = 170/250 (68.00%), Query Frame = 3 
Query:  417 ASGGQPDGDADSESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAV 1166
            A  GQ   +A SE + D  KA VFG LDG+LTSFA+VAGA+GG L    VL++G S+I AD LSMG+GEYLSSKA NEY+  E++REEWEL NHREGE+  MV+ +  RGMSR+DA++V  ++AKYDD FV+ +M+ E +G  +   P  D+  +++EG V F SFA  G +PLL Y + PL+    S        +LF  ACL+TAA+LF MG +KS F +R W  SG E L LGG CA LA+EIG AV
Sbjct:   44 ARAGQAHDEAHSE-KGDYLKAMVFGGLDGILTSFAIVAGAAGGHLPVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVMAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFVN-LMMNEELGLQV---PTGDDDDTVKEGFVMFLSFAFFGAMPLLGYVIVPLIKPDSS------PAILFFVACLVTAASLFGMGAIKSQFGTRHWCTSGTEMLFLGGSCAALAFEIGKAV 282
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: A0A835YUT7_9STRA (VIT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT7_9STRA)

HSP 1 Score: 220 bits (560), Expect = 9.170e-66
Identity = 130/284 (45.77%), Postives = 180/284 (63.38%), Query Frame = 3 
Query:  306 VQGQGAKEGERSRLFPAPMTGYSNGRSESPTDLEQPPASGGQPDGDADSESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIG 1157
            + G   + GE + L       Y++G +E+   L    A  G+P  +A SE+  +  K  VFG LDG+LTSFAVVAGA+GGGL    VL++G S+I+AD LSMG+GEYLSS+A NEY+  E++REEWEL NHREGE+  MV  + +RGMS+EDA +V  ++AKYDD FV+ +M  E     +    P  +  +I+EG + F SFA  G +PLL Y + P++         +S  +LF  AC +T  +LF MG +KS F +RSW+ SG E + LGG CA +A+EIG
Sbjct:    1 MNGLPPRAGETTNLVSGIRDAYNHGDAEASRLLHD--ARAGEPHEEAHSEA-GEYLKVMVFGGLDGILTSFAVVAGAAGGGLDWPVVLVLGFSNILADALSMGVGEYLSSQAHNEYVMAEKRREEWELKNHREGEIAEMVAIFTQRGMSQEDASDVVNKMAKYDDFFVNLMMSEE-----LQLQVPESQDETIKEGFIMFLSFATFGALPLLGYTIFPMLDPD------ISNAILFKLACAVTGVSLFLMGAIKSKFATRSWYASGFEMVCLGGVCAAVAFEIG 270
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: A0A7S3XV86_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV86_HETAK)

HSP 1 Score: 211 bits (538), Expect = 1.440e-62
Identity = 124/231 (53.68%), Postives = 158/231 (68.40%), Query Frame = 3 
Query:  474 KAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAV 1166
            KA +FG LDG+LTSFA+VAGA GGGL  Q+VLI+G S+I+AD LSMG+GEYLSSKA NEY+  E+KREEWEL NH+EGE++ M+D Y+ RGM + DA +V   +AKY+  FV+ VM+AE +G  +   P  DE  +++EG+V F SFA  G +PLL Y + P  S  G   E      LF  A   T   LF MG VKS F ++SW+ SG ETL LGG CA +AYE+G  V
Sbjct:   48 KAMIFGGLDGILTSFAIVAGAVGGGLAWQSVLILGFSNILADALSMGVGEYLSSKAHNEYVLSEKKREEWELRNHKEGEIKEMIDIYVERGMGQADATQVVNTMAKYEAFFVN-VMMAEELGLQV---PDEDEDETLKEGLVMFLSFACFGALPLLGYVIFP--SVLGVDNE----STLFWTAVATTLTVLFVMGAVKSYFGTKSWYASGAETLALGGACALVAYEVGGLV 268
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: W7TLX2_9STRA (Vacuolar iron family transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLX2_9STRA)

HSP 1 Score: 211 bits (537), Expect = 4.560e-62
Identity = 123/246 (50.00%), Postives = 163/246 (66.26%), Query Frame = 3 
Query:  441 DADSESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAVASCV 1178
            D   +S  D  K+ +FG LDG+LTSFA+VAGA+GGGL  + V+++G S+I AD  SMG+GEYLSSKA NE++  E++RE WEL N REGE++ M+D Y+ RGM  +DA++V  +++KYDD FV+ +MV E     +    P D+   ++EG+V F SFA  G +PLL YAL PL   S      +    LF  AC +TA  LF MG VKS F +R W  SG+E LVLGG CA +AYEIG  V+S V
Sbjct:   58 DETHDSVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVFKEKERESWELQNFREGEIKEMIDIYVERGMEPDDAEDVVRKMSKYDDFFVNVMMVEE---LGLQVPDPNDDI--VKEGVVMFLSFAGFGAMPLLGYALIPLCFPS------LGPSHLFNIACGVTALTLFIMGAVKSKFSTRGWLHSGLEMLVLGGICAVMAYEIGHLVSSLV 292
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: A0A7S4MYN1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYN1_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.330e-59
Identity = 115/237 (48.52%), Postives = 153/237 (64.56%), Query Frame = 3 
Query:  453 ESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDE--AGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIG 1157
            ++E  + K  +FG LDG+LTSFA+VAGA+GG L T  +LI+G S+I AD LSMG+GE+LSSKA NE++  ER+RE WE+ N+ EGE+  MVD Y+ RGM R+DA+ V   ++KY D FVD +M  E     +    P D+    + +EG+V F SFA  G  PLL YA+ P      ++   + +  LF  AC++T   LF MG VKS F S  WF  GMETL+LGG CA +AY IG
Sbjct:   56 KTEGGLLKPMIFGGLDGILTSFAIVAGAAGGSLSTSVILILGFSNIFADALSMGVGEFLSSKAENEWILSERERENWEMENYPEGEIREMVDIYVSRGMERDDAEMVIKTMSKYQDFFVDVMMAEE-----LQLQVPEDDYQMENFKEGVVMFCSFATFGAFPLLGYAIIP------AAFPYLGEDALFTCACIVTGIVLFCMGCVKSNFGSHHWFWCGMETLLLGGACAAIAYTIG 281
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: A0A7S1VE63_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE63_9STRA)

HSP 1 Score: 202 bits (514), Expect = 6.730e-59
Identity = 115/232 (49.57%), Postives = 155/232 (66.81%), Query Frame = 3 
Query:  468 IWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDE--AGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIG 1157
            + K  +FG LDG+LTSFA+VAGA+GG L T  VLI+G S+I AD LSMG+GE+LSSKA NE++  ER+RE WE+ N+ EGE++ MVD Y+ RGM ++DA+ V   +AKY+D FVD +M  E     +    P D+    S+REG++ F SFA  G +PL+ Y + P++  +      +    LF  AC++TA  LF +G VKS F S +WF SG ETL+LGG CA LAY IG
Sbjct:   49 LLKPMIFGGLDGILTSFAIVAGAAGGHLSTGVVLILGFSNIFADALSMGVGEFLSSKAENEWILSERRREAWEMENYPEGEIKEMVDIYVSRGMEQQDAELVIKTMAKYEDFFVDVMMTQE-----LELQVPDDDHVKESMREGVIMFCSFAFFGALPLIGYVIFPILFPT------MDDDALFWSACIVTAVVLFMLGSVKSMFCSMNWFVSGSETLLLGGACATLAYTIG 269
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: B7FUB4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUB4_PHATC)

HSP 1 Score: 201 bits (512), Expect = 1.340e-58
Identity = 121/241 (50.21%), Postives = 157/241 (65.15%), Query Frame = 3 
Query:  453 ESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDEAG-SIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAVAS 1172
            ++E  + K  +FG LDG+LTSFA+VAGA+GG L  Q VLI+GVS+I AD LSMG+GE+LSSKA NE++  ER REEWEL N+ EGE++ MV+ +  +GMS EDA      +AKY D FVD +M  E         P  D    S++EG+V F SFA  G +PLL Y L PL          +S+G LF+ AC++T   LF MG VKS F ++ WF +GMETL+LGG CA +A+ IG  V S
Sbjct:   41 QTEGGMLKPIIFGGLDGILTSFAIVAGAAGGELSPQVVLILGVSNIFADALSMGVGEFLSSKANNEWILSERAREEWELENYPEGEIKEMVEIFEDKGMSHEDAVSCINTMAKYKDFFVDIMMQQE----LELQVPDKDHIRESMKEGVVMFCSFAFFGALPLLGYVLFPL------EFHDMSEGELFVSACIVTGMVLFFMGSVKSFFSNQQWFIAGMETLLLGGACATVAFTIGQLVKS 271
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BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Match: A0A7S1CNE0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNE0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 4.200e-58
Identity = 116/228 (50.88%), Postives = 147/228 (64.47%), Query Frame = 3 
Query:  474 KAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSIVADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMRRGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIREGIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAAALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIG 1157
            K+ VFG LDG++T+FAVVAGA GGGL    +LI+G SS+ AD LSMG+G+ LSSKA NE++ +ER REEWEL N +EGEV+ MVD Y  +GM  EDA+EV  R+AKY D FVD +MV E     +    P  +   I +G+VTF SF + G VPLL Y           S   ++   LF  AC LTA  LF +G+VKS F   +W+ SG+E LVLG C A +AY IG
Sbjct:   53 KSVVFGGLDGIITTFAVVAGAVGGGLSVDVILILGFSSVFADALSMGVGDALSSKAENEFIMLERSREEWELENDKEGEVQEMVDLYTSKGMKEEDAREVITRMAKYPDFFVDVMMVEE-----LELQVPDPDDNPIWDGLVTFCSFVVFGTVPLLGYV--------AFSSLQLTVTALFGIACFLTACTLFGLGMVKSQFTKMTWYRSGLEVLVLGSCTAMVAYFIG 267
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig160.3452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJJ9_ECTSI7.420e-19697.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1NR54_HETAK6.580e-6953.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LRS5_ECTSI1.040e-6752.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUT7_9STRA9.170e-6645.77VIT family-domain-containing protein n=1 Tax=Tribo... [more]
A0A7S3XV86_HETAK1.440e-6253.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TLX2_9STRA4.560e-6250.00Vacuolar iron family transporter n=2 Tax=Monodopsi... [more]
A0A7S4MYN1_9STRA3.330e-5948.52Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1VE63_9STRA6.730e-5949.57Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B7FUB4_PHATC1.340e-5850.21Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1CNE0_9STRA4.200e-5850.88Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig160contigE-siliculosus-1a_F_contig160:23557..28876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size903
Model size1217
Exons5
Ec32 orthologEc-17_002280.1
Ec32 ortholog descriptionCcc1 family
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EggNOG OGsCOG1814@1,KOG4473@2759
EggNOG free text desc.cellular manganese ion homeostasis
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005381,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006828,GO:0006873,GO:0006874,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0008324,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0012505,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0034220,GO:0034755,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0051716,GO:0055065,GO:0055071,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071421,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0097577,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098852,GO:1903874
KEGG ModuleM00385,M00386
KEGG Pathwayko03420,ko04120,ko05161,ko05203,map03420,map04120,map05161,map05203
KEGG koko:K10610
Preferred nameCCC1
Seed eggNOG ortholog2880.D8LJJ9
Seed ortholog evalue1.2e-155
Seed ortholog score555.8
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928115.799129-UTR-E-siliculosus-1a_F_contig160:23556..235801622928115.799129-UTR-E-siliculosus-1a_F_contig160:23556..23580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig160 23557..23580 -
1696318810.2717557-UTR-E-siliculosus-1a_F_contig160:23556..235801696318810.2717557-UTR-E-siliculosus-1a_F_contig160:23556..23580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig160 23557..23580 -
1622928115.8849306-UTR-E-siliculosus-1a_F_contig160:28586..288761622928115.8849306-UTR-E-siliculosus-1a_F_contig160:28586..28876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig160 28587..28876 -
1696318810.3285244-UTR-E-siliculosus-1a_F_contig160:28586..288761696318810.3285244-UTR-E-siliculosus-1a_F_contig160:28586..28876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig160 28587..28876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928115.8140602-CDS-E-siliculosus-1a_F_contig160:23580..237061622928115.8140602-CDS-E-siliculosus-1a_F_contig160:23580..23706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 23581..23706 -
1696318810.283253-CDS-E-siliculosus-1a_F_contig160:23580..237061696318810.283253-CDS-E-siliculosus-1a_F_contig160:23580..23706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 23581..23706 -
1622928115.8256729-CDS-E-siliculosus-1a_F_contig160:24332..246951622928115.8256729-CDS-E-siliculosus-1a_F_contig160:24332..24695Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 24333..24695 -
1696318810.2922518-CDS-E-siliculosus-1a_F_contig160:24332..246951696318810.2922518-CDS-E-siliculosus-1a_F_contig160:24332..24695Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 24333..24695 -
1622928115.8394897-CDS-E-siliculosus-1a_F_contig160:25703..258671622928115.8394897-CDS-E-siliculosus-1a_F_contig160:25703..25867Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 25704..25867 -
1696318810.3014953-CDS-E-siliculosus-1a_F_contig160:25703..258671696318810.3014953-CDS-E-siliculosus-1a_F_contig160:25703..25867Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 25704..25867 -
1622928115.8561492-CDS-E-siliculosus-1a_F_contig160:26289..264081622928115.8561492-CDS-E-siliculosus-1a_F_contig160:26289..26408Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 26290..26408 -
1696318810.310527-CDS-E-siliculosus-1a_F_contig160:26289..264081696318810.310527-CDS-E-siliculosus-1a_F_contig160:26289..26408Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 26290..26408 -
1622928115.8697443-CDS-E-siliculosus-1a_F_contig160:28455..285861622928115.8697443-CDS-E-siliculosus-1a_F_contig160:28455..28586Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 28456..28586 -
1696318810.3191533-CDS-E-siliculosus-1a_F_contig160:28455..285861696318810.3191533-CDS-E-siliculosus-1a_F_contig160:28455..28586Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig160 28456..28586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig160.3452.1prot_E-siliculosus-1a_F_contig160.3452.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig160 23581..28586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig160.3452.1

>prot_E-siliculosus-1a_F_contig160.3452.1 ID=prot_E-siliculosus-1a_F_contig160.3452.1|Name=mRNA_E-siliculosus-1a_F_contig160.3452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=301bp
MSLNAVQGQGAKEGERSRLFPAPMTGYSNGRSESPTDLEQPPASGGQPDG
DADSESESDIWKAAVFGALDGVLTSFAVVAGASGGGLGTQAVLIVGVSSI
VADGLSMGLGEYLSSKAMNEYMDIERKREEWELANHREGEVENMVDTYMR
RGMSREDAQEVSARLAKYDDCFVDAVMVAEGVGSSMFASPPLDEAGSIRE
GIVTFGSFALSGIVPLLSYALSPLVSASGSSGEPVSQGVLFLWACLLTAA
ALFSMGVVKSTFVSRSWFGSGMETLVLGGCCAGLAYEIGAAVASCVAGMS
*
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mRNA from alignment at E-siliculosus-1a_F_contig160:23557..28876-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig160.3452.1 ID=mRNA_E-siliculosus-1a_F_contig160.3452.1|Name=mRNA_E-siliculosus-1a_F_contig160.3452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5320bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig160:23557..28876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGTCCCTTGCTTCCTGCTTTTTTGCCTTGCTGTGTTTCGCCCTCAGCA
CTGCCACGTGCTCTCTCCCTATCCCTCTTTAGGGTGCATACTCGTGTGGC
AGATTCCTAAGGACTAGCTAGGTGGCACGCTCTTTGCCGCCGTCCTCGAG
ACTTTATCCCAGAGGGAATCTCTCACAGTAGGGGTTCCGAATTACCTGTT
GCGCGTGTAGAGCAGTGTTCCAAGGCACACGCGCGCGCGACCCAACATCA
TTGCCCAGCAGCAAGACCTACCACCTTCCGCCGCACCACCATGAGTCTCA
ACGCGGTCCAGGGTCAGGGAGCGAAGGAAGGAGAGAGGTCCCGGCTCTTC
CCCGCGCCCATGACCGGCTACAGCAACGGCCGGAGCGAATCGCCAACTGA
TCTCGAGCAACCTCCTGCCAGGTTCGTGTTTGCTGGCTCTTTCCATGTAT
TCCTTCCCGCTCATAAGCGGTGCGCTGCCGCCATTCTACCGATGACATAC
TATACCATTCGGGTTCCGTTCCTCCGGCGAGAGCTTTGGGCCCCGTGAAT
ATGCTGCTCTAGCATTTTTGTTTACATGTTTCGTTTCCTGGTGGTGCAGG
ATGTGTTTTATGTGAAGGAATGTTGGATTTGTTATTTCAGTGGTGATTTC
CTGCTGCCCCCGGGTCTCTTGAGTTCCGTCTCCGACCCGTACAACACCGC
TGTTTTCCTAAAATTGCCAGCGGTGTGTTTTTCCTGTTTCCTACTGCCCG
CCGCCCGGAGATTTATGGTTTTGAGATGATGTGTGCTGCGGTATGTATGT
ATCTACCGCTGGCGTTCGTTGATGTCCGACAAGTCCGTAAGATCGGGTCC
GGCTCAATTGTTGCCGGCACTGCGCTGGTGCTTGCGTATGCACAGCTATA
GTTATGTTTCGGACATGGTAATGAAACATGTGCTTGTTGCCTTCGATTCC
CGCCCGCTACGTAGCAGTGTTGCCGCGGGTGACACAAGATACCACACCCC
TGGAACGATTTTCAAAAGGTCGATTGCTCCACAGCACGAAGAGTGGCGGT
GCCGGAACATGGGGGGGGGGGCGTTGGACACTTCTCGTCGAGAGCTATCG
TATCGTTTGTACATGCTCTCTGGACTGTATGTACTGCTGTAGCCAGTAGC
TGCTGTAGCCAGTAGTCGAGCGTTGGTGAAAGGGGTGTGTGATGCCTTGT
GTCACAGACGGTGCTTTTGTTCCCGATCAGCGCACGTACGATAGAGCGTG
GTACATCCCCTGTGTGTAGGTGCAAGACCCCACGGGAGGTGGAGGCGCTT
TCTGCTTGCCGGTGGCGTGCCCTGTTGTCCCAAGCCTGTCTCGCACAATC
AAGTAGCACCGCGGTGAAGCGCTCGCTTTCTGTCCAATCCTCCCAACAGC
TAATTCCTACGAGAAGTACCAAGGGAAGATGGTCCTGAGTTTTTCTGGCC
AGTTGGGGCTGTGTTATTTCCATTTTCGTCTTCAAAACGAGGCTCTGGAC
AGCTCGTTCTCGACCTCCTAGACATTCCTCGTTGAGAAGCAGCGGGCACA
TGTCATGGATCTCAAGCTTTTGCTAATGGATCTCAAGCTTTGTCTTTAGG
AACATTTAACCCTACCGCGCTCAAGTAACCTTTTGGTAATGGATCCCAAG
ATTTTGCCTGAGACATGTACACTACCGCTCAAGTATCGGCCCGCGCAAGC
TCCATTGTAGGGCTTTCCCTGACGTGCTCTGCGGGAAGGTGGACCCTATC
GCTCAACCAAATTCATGGGTCGCTAGCTTTTTCTATTGGGTCTGAAGCTT
TTGTTGAGACACACTTCTTCTACCGCGCTCAAGTATCAGCCGTGTTGCAC
GCTCCCTAGAGCTGAGCTGAGGTTGTCTGCGGGAAAGTTGGGCCCTCTCG
CTGAACTTTTTGCGATGGAATATGGTCGGCGGAATCGCCCTATTGCCGTC
GTCCCCCTCCCCCGAGAGTGTTTAGAGGGCTGGTTTTTTATGCATGTACG
TTTTTCAACATCACCTCAAGTCATTTATGCAATGGTCACCCCGGTTCAAC
AAGTCCACTCGTCCTATGGTGTGGCGGCGAGATGTTTGTTTTGCGCATTT
CGGTGGCGAATGTGTCCTGAACGGGAGGGACCATGTCAGAATTGATGAGA
GCTTGTCCATATTTGTCCCGCCCGGGTCTTTGTTTTCTCTGTCCCCCTGC
TCTGCTTTTCTCCCGATGTCAGCGTCGCACGAGATCATTGCACGAACACG
ACGATGACACGGTCACAGAAGCAGTGTGATGGTATCGTCCATGAGAGAAT
GACGCCGTTTACTGCGCGGAGGTGATGGTTGCATGTAGACAAGATAACCA
CATCGCGTATTTGACCTCTGTCCACTCGTCCAGCTTCGTTCTCTTGACCC
TGCATCCTGTCTTTGCGTTGGCCGCGCCCTCTCGACCCTGCCTACTATCA
ACGCACCCTTCTCCGCAGCGGGGGGCAGCCGGATGGCGACGCTGACAGCG
AGAGCGAGAGCGATATCTGGAAAGCCGCAGTTTTCGGCGCCTTGGATGGC
GTGCTCACAAGCTTCGCGGTCGTTGCGGGTGCTTCGGGTGTGTATTGTGT
GTGTGTGTGTGTGTGTCTTTTTTTCTTGGCATTGACCTCGCTAACCGACT
GACCAAAATGAAGAAGACGCCAGTCTCACGGCGGTTGAAGACAGAAAATG
CAGCCATGATCTGGGACTGCGTCATGGGGGAGGCTAAGTGTGTGTGTGCG
CGTCTTTCGTGTGTTTCATGAATTAGCGACGACCGCGCTAACCGGCTGAC
CAATCGACACAGGGGGTGTTACATCTTGCGCAGCCTATGGTAAGCAGGGC
GTTTTGTCGCCCGCGGAAAACTCTGGGATGTTTCTGCCCGCTCCCTTTCG
TTCTCGTGAGGAAAGCGTTCGCACGGCTGACTATCCTCTCGCTGCTCTTG
TCGCCTCTTACCCTTTACCACCCTCTCTCTCACTCTCCTGCCGGTCTTGA
TACACACAGGAGGGGGGCTTGGCACGCAGGCGGTGTTGATCGTGGGGGTT
TCCAGCATCGTAGCGGACGGGCTGAGCATGGGGCTCGGGGAGTACCTCTC
GAGCAAGGCCATGAACGAGTACATGGATATCGAGCGGAAGCGGGAGGAGT
GGGAGCTCGCGAACCACAGAGAGGTGCGTGTACCGTGTGTTTTTTTTGAG
CCGCGTGTATGTGTGTTTGGTGTGTGTCTTTGTTGTTTGCATCGACCGCG
CTAGCTGGCTGACCAATGAAAAGACGTCCGTCTCAGTGCGTCTGAAGACA
AGAACATATTTGTGTTGTACAGGCCGGGGGGAGGGGGAGGGTTTGGACTG
AGCGGTGCAGCCTCTGCAGTCACCCGTGTTGCGAAGAGAGAACAATGTTC
TTGTCTTTCGCTAATGTAGTGTTTTTTGCCCCATTGTCTGTCCCACAAGT
TCATGAAGCAATCTCCTCCTGACTAGGACGAAAAATACGAGAAATGCTTC
CTCTACATGGGGCGTGCGTATTTTCTAGTGTTTGCATCCTGTGGTTTGCG
TGCCCTTGTCGTTTGCCGCAAGCGTCGACCGAACCATCGGTAGAAAAGTC
GTCGTCCGTTTCAGCTGGAACATGGAACATGACCTTTGTGTCATGGGTGC
GCCCCCCCCCCCCCCCCCATGGTTGGGGGGTGGTGTTAGGGAACAGACAG
ACGGCTCCAGCGTTCAGACAGAGTTGGTCGGTGATTTTCTCCGTTACTGA
CTTGTTGCTGTTTTTGGTGTCTCTCACCATCGCTTTGATGTCGGCTGTGT
TCTTTTAAGAGTGTCGGCTCTGGAGCCTTGACGGCCTCCCTACGGCCGAT
TAAATATATATATATACTTTTTTTCCGTTGCTCCATCGCCTACATTGAAG
AAAGTCATCCCATCCTGCCATGTATATCTGACTTGTGCGTTGCACTTTTT
GTTTGTATTCCAAGCGAGCTGTTGGCCTACTACGCGCCACCACGTGCTCC
CCGCCTCACCCTGTGCTCTCTCCTTCGGTGTTGCTCCTGCCAAACTCACT
CACACGAGCTTAACCGATGGCCAAGTATTTCCTCCTTACTTTCCCGCCCC
ACCCGGCCCCTCTTCTCTCCCCGCGCCCGAAACTCGCGGGCGCGCGCCGT
TTTGAATCCCCTATCCCGCTGCCACCCTCAGGGAGAGGTCGAGAACATGG
TGGACACGTACATGCGAAGGGGCATGTCCCGGGAGGACGCCCAGGAGGTC
TCGGCGAGGCTCGCCAAGTACGACGACTGCTTCGTGGACGCGGTGATGGT
GGCGGAGGGGGTGGGGTCCTCCATGTTCGCGTCGCCCCCGCTGGACGAGG
CCGGGTCCATCCGCGAGGGCATCGTGACCTTCGGGTCGTTCGCCCTCTCC
GGCATCGTGCCTCTGCTGTCGTACGCGCTGTCTCCTCTGGTCTCGGCGAG
CGGCAGCAGCGGGGAACCAGTGTCTCAGGGGGTGCTGTTCTTGTGGGCCT
GCCTCCTGACCGCGGCCGCTCTCTTCTCGATGGGGGTCGTGAAGGTGCGT
GTGTGTGTGTGTTTGTGTGTGCGCTTCTTTTCTTCATCGACCAGGCGAAC
GGGGGTGACCAAATACGAAAATACATCAATCTCAGTGCGGCTGGAAACTG
GATTGTGTGAGTGCTTGCATCGACCATGCTCACCGTGTGACGAAAGACCG
GTGTGTGCGTTGGTCTTTTATTTGATTTTTTTAGCGCATTCCGGCTGACA
AGGGTCTTCCACTAAGCGCCGTGTACGCATGGGCATGGATCGCTCGCGTC
GTTCCTTCTGCCGTTGTCGCCTTCCTACCGTTTAGGTTGTTTCGGCCGCC
CCTGATAGTTTCGGACTCTGTCCAGGTTCTTACTCACCTTCATTGCGCTT
CAAGGCAAAGGCTTAGAATCCCGTGGTTTCAGGCGTACCCACGCATAGCG
CTATCGCGTGCTTGTTATCCTGTTTACCGCGGCATGGAGTTATTTTCCGC
CAGCGGTCAGTCAAATGTTTTGGACGTCTTTCCCTCGTTGATCGATTGGT
TCCGTACTGCGAAAGCTTAAAAAGTAGATACCTATTATGGCACAGCTCAC
GTATCTCTCCTGTTCGTGTCACGTTCGAACGTAATCGTTTTTCTCTCGTG
TTGTTTTTCCCTTTCGGCAGTCGACTTTCGTTTCGCGCTCCTGGTTCGGA
TCCGGGATGGAAACACTGGTTCTCGGGGGGTGCTGCGCGGGGCTGGCGTA
CGAGATAGGCGCGGCCGTGGCTAGCTGTGTGGCGGGCATGTCGTGACGGC
AAAGAGGCTTGTGTGTAGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig160:23557..28876-

>mRNA_E-siliculosus-1a_F_contig160.3452.1 ID=mRNA_E-siliculosus-1a_F_contig160.3452.1|Name=mRNA_E-siliculosus-1a_F_contig160.3452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1806bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig160:23557..28876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGTCTCAACGCGGTCCAGGGTCAGGGAGCGAAGGAAGGAGAGAGGTC
CCGGCTCTTCCCCGCGCCCATGACCGGCTACAGCAACGGCCGGAGCGAAT
CGCCAACTGATCTCGAGCAACCTCCTGCCAGATGAGTCTCAACGCGGTCC
AGGGTCAGGGAGCGAAGGAAGGAGAGAGGTCCCGGCTCTTCCCCGCGCCC
ATGACCGGCTACAGCAACGGCCGGAGCGAATCGCCAACTGATCTCGAGCA
ACCTCCTGCCAGCGGGGGGCAGCCGGATGGCGACGCTGACAGCGAGAGCG
AGAGCGATATCTGGAAAGCCGCAGTTTTCGGCGCCTTGGATGGCGTGCTC
ACAAGCTTCGCGGTCGTTGCGGGTGCTTCGGCGGGGGGCAGCCGGATGGC
GACGCTGACAGCGAGAGCGAGAGCGATATCTGGAAAGCCGCAGTTTTCGG
CGCCTTGGATGGCGTGCTCACAAGCTTCGCGGTCGTTGCGGGTGCTTCGG
GAGGGGGGCTTGGCACGCAGGCGGTGTTGATCGTGGGGGTTTCCAGCATC
GTAGCGGACGGGCTGAGCATGGGGCTCGGGGAGTACCTCTCGAGCAAGGC
CATGAACGAGTACATGGATATCGAGCGGAAGCGGGAGGAGTGGGAGCTCG
CGAACCACAGAGAGGAGGGGGGCTTGGCACGCAGGCGGTGTTGATCGTGG
GGGTTTCCAGCATCGTAGCGGACGGGCTGAGCATGGGGCTCGGGGAGTAC
CTCTCGAGCAAGGCCATGAACGAGTACATGGATATCGAGCGGAAGCGGGA
GGAGTGGGAGCTCGCGAACCACAGAGAGGGAGAGGTCGAGAACATGGTGG
ACACGTACATGCGAAGGGGCATGTCCCGGGAGGACGCCCAGGAGGTCTCG
GCGAGGCTCGCCAAGTACGACGACTGCTTCGTGGACGCGGTGATGGTGGC
GGAGGGGGTGGGGTCCTCCATGTTCGCGTCGCCCCCGCTGGACGAGGCCG
GGTCCATCCGCGAGGGCATCGTGACCTTCGGGTCGTTCGCCCTCTCCGGC
ATCGTGCCTCTGCTGTCGTACGCGCTGTCTCCTCTGGTCTCGGCGAGCGG
CAGCAGCGGGGAACCAGTGTCTCAGGGGGTGCTGTTCTTGTGGGCCTGCC
TCCTGACCGCGGCCGCTCTCTTCTCGATGGGGGTCGTGAAGGGAGAGGTC
GAGAACATGGTGGACACGTACATGCGAAGGGGCATGTCCCGGGAGGACGC
CCAGGAGGTCTCGGCGAGGCTCGCCAAGTACGACGACTGCTTCGTGGACG
CGGTGATGGTGGCGGAGGGGGTGGGGTCCTCCATGTTCGCGTCGCCCCCG
CTGGACGAGGCCGGGTCCATCCGCGAGGGCATCGTGACCTTCGGGTCGTT
CGCCCTCTCCGGCATCGTGCCTCTGCTGTCGTACGCGCTGTCTCCTCTGG
TCTCGGCGAGCGGCAGCAGCGGGGAACCAGTGTCTCAGGGGGTGCTGTTC
TTGTGGGCCTGCCTCCTGACCGCGGCCGCTCTCTTCTCGATGGGGGTCGT
GAAGTCGACTTTCGTTTCGCGCTCCTGGTTCGGATCCGGGATGGAAACAC
TGGTTCTCGGGGGGTGCTGCGCGGGGCTGGCGTACGAGATAGGCGCGGCC
GTGGCTAGCTGTGTGGCGGGCATGTCGTGATCGACTTTCGTTTCGCGCTC
CTGGTTCGGATCCGGGATGGAAACACTGGTTCTCGGGGGGTGCTGCGCGG
GGCTGGCGTACGAGATAGGCGCGGCCGTGGCTAGCTGTGTGGCGGGCATG
TCGTGA
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