mRNA_E-siliculosus-1a_F_contig1599.3431.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1599.3431.1 vs. uniprot
Match: D7G3J7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J7_ECTSI) HSP 1 Score: 842 bits (2174), Expect = 1.580e-303 Identity = 408/426 (95.77%), Postives = 410/426 (96.24%), Query Frame = 1
Query: 1 SEGKCQCAPGYSHVPDLGCMDERPVWLDLKGPTHLTMKQCDKYVEHGVQVVDANSENHDRNVGVSYSKPPGKCASEMGTFTVNYTLNTEWMDPPVQYILRHVTVEDVDECALDIGSPQAACYGCKPSCHKHARCENRVGTYTCQCPACMGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDNPLVMTVGLNTDIAGNPIRGKDYTQELASLITRTAGGALCNDGLGSRCATVIDNNGTHQGVDITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEYADQKVKEAMKNCPKCGTGKPTECPKPPAPVQLPCKPSEGEKGRAAGKTASDISCSRDCPCSERRECVAESECAVRLEEQKQEHSATCQKEAGGWFFPIILTGAQQLAVAALVLLATGVSVFAAVH 1278
SEGKCQCAPGYSHVPDLGCMDERPVWLDLKGPTHLTMKQCDKYVEHGVQVVDANSENHDRNVGVSYSKPPGKCASEMGTFTVNYTLNTEWMDPPVQYILRHVTVEDVDECALDIGSPQAACYGCKPSCHKHARCENRVGTYTCQCPACMGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGD+PLVMTVGLNTDIAGNPIRGKDYTQELASLITRTAGGALCNDGLGSRCATVIDNNGTHQGVDITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEYADQKVKEAMKNCPKCGTGKPTECPKPPAPVQLPCKPSEGEKGR+AG TASDISCSRDCP A RLEEQKQ HSATCQKEAGGWFFPIILTGAQQLAVAALVLLATGVSVFAAVH
Sbjct: 289 SEGKCQCAPGYSHVPDLGCMDERPVWLDLKGPTHLTMKQCDKYVEHGVQVVDANSENHDRNVGVSYSKPPGKCASEMGTFTVNYTLNTEWMDPPVQYILRHVTVEDVDECALDIGSPQAACYGCKPSCHKHARCENRVGTYTCQCPACMGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDDPLVMTVGLNTDIAGNPIRGKDYTQELASLITRTAGGALCNDGLGSRCATVIDNNGTHQGVDITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEYADQKVKEAMKNCPKCGTGKPTECPKPPAPVQLPCKPSEGEKGRSAGNTASDISCSRDCPXXXXXXXXXXXXXAARLEEQKQGHSATCQKEAGGWFFPIILTGAQQLAVAALVLLATGVSVFAAVH 714
BLAST of mRNA_E-siliculosus-1a_F_contig1599.3431.1 vs. uniprot
Match: B7FQ92_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ92_PHATC) HSP 1 Score: 198 bits (503), Expect = 2.450e-52 Identity = 122/322 (37.89%), Postives = 165/322 (51.24%), Query Frame = 1
Query: 13 CQCAPGYSHVPDLGCMDERPVWLDLK----GPTHLTMKQCDKYVEHGVQVVDANSENHDRNVGVSYSKP-PGKCASEMGTFTVNYTLNTEWMDPPVQYILRHVTVEDVDECALDIGSPQAACYGCKPSCHKH--ARCENRVGTYTCQCPACMGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDNPLVMTVGLNTDIAGNPIRGK-------------DYTQELASLITRTAGGALCNDGLG-----SRCATVIDNNGTHQGVDITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEY 903
C C PGY GC+DERP L LK G L +KQ D Y E+ V+++D N+E + R++ ++YS+ P C + +G F VNYT+ W PP I R V +ED+DEC +D+ + +C P C ARC N +G+YTCQCP GDGF+ + P G+ GGTGC+DT PVI+L+G NP V V IAG R K Y ++ L+ TAG LC S C + D T+QG + + K+ EP +K L W V YN DEAGN A R I ++EV + E+
Sbjct: 332 CACKPGYVRHEKYGCVDERPPLLRLKNDPLGDHTLRLKQGDVYKEYAVEILDENAEEYLRSLKIAYSQALPHGCLTRVGEFHVNYTIAMPWTSPPYVRITRRVVIEDIDECNIDVDKYRDSCPELVPQCDTKNGARCVNTIGSYTCQCPRFTTGDGFQQNISFEDHESPDGFLGGTGCRDTSRPVISLVGPNPRVFRVCECGGIAGLSGRKKGEFDLKLKSQQQEQYGNDIKELVRSTAGAELCATPSKPHPDPSECISAYDE--TYQGK-VNLSKKVSVGEPVQKSSLLWSVPYNVQDEAGNAAETVWRDIVVEEVELSEW 650
BLAST of mRNA_E-siliculosus-1a_F_contig1599.3431.1 vs. uniprot
Match: A0A7R9U927_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U927_9STRA) HSP 1 Score: 177 bits (449), Expect = 2.030e-45 Identity = 83/203 (40.89%), Postives = 116/203 (57.14%), Query Frame = 1
Query: 10 KCQCAPGYSHVPDLGCMDERPVWLDLKGPTHLTMKQCDKYVEHGVQVVDANSENHDRNVGVSYSKPPGKCASEMGTFTVNYTLNTEWMDPPVQYILRHVTVEDVDECAL--------DIGSPQAACYGCKPSC--HKHARCENRVGTYTCQCPACMGGDGF-EPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDNPLVMTV 585
+C C GY +P GC+D+ L L+GP L + QC Y E G+ + D N+E ++R + + YS+P G C +G F VNYT+ T W DP + R+V V D+DEC L D + C C+ C A C+N +GTY C CP C GDGF + F PRK +P G+ GGTGC+D+C PVI+L+ +NP+ + V
Sbjct: 264 ECVCEEGYKEIPGYGCVDDTLPVLKLRGPQTLVLPQCGAYTELGLDIEDTNAEQYERTLRIRYSRPLGTCIPTLGNFHVNYTVATNWTDPAFVMVQRNVKVADIDECMLAQTGTLLLDGKEVRPDCSDCEAKCDFENGATCKNHIGTYECSCPKCATGDGFVKGFAPRKDRAMPVGFKGGTGCRDSCPPVISLLEENPVFLPV 466
BLAST of mRNA_E-siliculosus-1a_F_contig1599.3431.1 vs. uniprot
Match: B8BSL1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSL1_THAPS) HSP 1 Score: 173 bits (438), Expect = 1.860e-43 Identity = 118/356 (33.15%), Postives = 170/356 (47.75%), Query Frame = 1
Query: 13 CQCAPGYSHVPDLGCMDERPVWLDLK-GPTHLTMK-------QCDKYVEHGVQVVDANSENHDRNVGVSYSKP-PGKCASEMGTFTVNYTLNTEWMDPPVQYILRHVTVEDVDECAL--DIG----SPQ--AACYGCKPSCHKHARCENRVGTYTCQCPACMGGDGFEPFTPRK--------SGTLPAGYDGGTGCKDTCAPVITLIGDNPLVMTVGLNTDIAGNPIRGKD-----------------YTQELASLITRTAGGALCN-----DGLGSRCATVIDNNGTHQGV-DITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEYADQKVKEAMKN 936
C C PG+ GC+DE P L ++ P+H K Q +KY EHGV V+D N+E + R++ ++YS+P P C EMG F VNYT+ T W DP R V +E+V+EC + D+G P+ A C G A C + +GTY+C+CP GDGF P K +P Y GGTGC+DT P I +IG NP V + + G+D Y ++ +I T+G LC + + C D T++GV D++ + + EP PLQWK+ YN +D+AGN A R I + EV + ++ + E + N
Sbjct: 377 CACKPGFFRDERFGCVDENPPVLHIRPDPSHTDPKTGITRLVQGEKYEEHGVDVIDDNAEEYLRSLKIAYSRPLPQGCLLEMGEFHVNYTVATPWTDPEFVRAKRTVVIENVNECRVKEDVGVGKYCPELVAMCDG-----ESGAMCVDEIGTYSCKCPVGTEGDGFLPIPRLKLDGKGGYVGSMIPLNYRGGTGCRDTSRPTIDIIGPNPKKFLVAKPSGLKSIMRMGEDKDTNASVEKLLAEQRSHYENQIRFMIKSTSGAELCATTSKPNVRATDCIHAQDQ--TYKGVVDLSARVSVGEPIAKDGYPLQWKIPYNVIDDAGNKAKTVWRDIVVDEVDLNDFERKTKAEILAN 725
BLAST of mRNA_E-siliculosus-1a_F_contig1599.3431.1 vs. uniprot
Match: A0A836CIC8_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIC8_9STRA) HSP 1 Score: 172 bits (436), Expect = 4.410e-43 Identity = 131/385 (34.03%), Postives = 174/385 (45.19%), Query Frame = 1
Query: 1 SEGKCQCAPGYSHVPDLGCMDERPVWLDLKGPTHLTMKQCDKYVEHGVQVVDANSENHDRNVGVSYSKPPGKCASEMGTFTVNYTLNTEWMDPPVQYILRHVTVEDVDECALDI---GSPQAA-----------CYGCKPSCHKHARCENRVGTYTCQCPACMGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDNPLVMTVGLNTDIAGN---PIRGKDYTQELASLITRTAGGALCNDGLGSRCATVIDNNGTHQGVDITHNLKI-LEPEPSKKD--------PLQWKVS---------YNAVDEAGNYALPKTRTIEIKEVSMEEYADQKVKEAMKNCPKCGTGKPTECPKPPA---PVQLP-CKPSEGEKGRAA 1038
+ KC C G+ V GC+DE L + G L +KQ D YS+P G C MG F VNYT+ T W +PP +R V VED+DEC+L G A C C+P CH A C+N +G+YTCQCP C GDGF P R G P G+ GGTGCKD+C PVI LIGD V + G P++ +D+ ELA LI T C+ L D+ G + + + E E S++ PL+W+V Y+ VD AGN A RTI++ ++S+EE+A Q V A + + +P P PPA P + P C P + G A
Sbjct: 1202 ASAKCICKNGFQFVEGFGCVDETLPELTVIGANPLRLKQVD------------------------YSQPLGSCLRTMGEFHVNYTIQTPWTEPPYMRAIRRVIVEDIDECSLPAIAEGHISGAMTREHALAALQCEECQPKCHPDALCKNTIGSYTCQCPECTTGDGFLPAIFRH-GAAPEGFKGGTGCKDSCPPVIQLIGDTVTEFKVCKCEGLLGGRGAPVQ-RDWDGELAQLIRETGS---CHQSLYDP-----DSEEQQAGPNDSDSAPAGAESERSRRSTLGVEWEGPLEWRVPEXXXXXXXXYDVVDAAGNRAATVYRTIKVTQLSLEEFAAQAV--AKRELELARSAQPKPPPTPPAVARPQKCPKCPPPKDCGGEVA 1550
BLAST of mRNA_E-siliculosus-1a_F_contig1599.3431.1 vs. uniprot
Match: A0A7S2B575_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B575_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.560e-25 Identity = 90/273 (32.97%), Postives = 125/273 (45.79%), Query Frame = 1
Query: 229 MGTFTVNYTLNTEWMDPPVQYILRHVTVEDVDECALDIGSPQAACYGCKPSCHKHARCENRVGTYTCQCPAC-MGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDNPLVMTV----GLNTDIAGNPIRG---------KDYTQELA-----------------SLITRTAGGA---------------LCNDGLGSRCATVIDNNGTHQGVDITHNLKILEPEPSKKDPLQWKVSYNAVDEAGNYALPKTRTIEIKEVSMEEYAD 909
M FTV Y + T+W DPP Q R V V + +ECA S C C P C +A C + G+YTC+CP C + GDGF + P GY G+GC D+CAP+I L G NP + V GL I+G R +++ +EL S +R++G + D RCA +D T VD+T ++I PE K+ QWKV Y+ DE GN+A+ R I++ E S++E D
Sbjct: 1 MTGFTVRYRIETKWTDPPYQIAERQVRVVNTNECAARTLSTDD-CADCLPQCSNNAICVDTPGSYTCRCPTCAVHGDGFMRLP--QGAKRPVGYVNGSGCSDSCAPLIKLQGPNPRIFRVPKCHGLPM-ISGVESREWDADMKRLVREHPEELCTANPNTPAHSASHFLDDSAASRSSGNSNWRLWADKQSSESSFYPKDSHRGRCAVAMDETVTGT-VDLTDKIRIGVPEMVGKN--QWKVPYDVSDEVGNHAITAYRIIQVVEYSLDELED 266
BLAST of mRNA_E-siliculosus-1a_F_contig1599.3431.1 vs. uniprot
Match: A0A7S1D9P7_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9P7_CYCTE) HSP 1 Score: 79.7 bits (195), Expect = 1.990e-14 Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 394 ARCENRVGTYTCQCPACMGGDGFEPFTPRKSGTLPAGYDGGTGCKDTCAPVITLIGDNPLVMTVGLNTDIAGNPIRGKD----------------YTQELASLITRTAGGALC 684
A C N +G+YTCQCP GDGF+ ++P G++GGTGC+DT PVI ++G NP V V ++G + G++ Y + LI+ T GGALC
Sbjct: 4 AICSNTIGSYTCQCPEYSSGDGFKATASFSKESIPEGFEGGTGCRDTSIPVIEILGPNPKVFKVCKCGGLSG--VLGRETGLSEVDELCKAQRNAYESSIKGLISSTQGGALC 114 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1599.3431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1599.3431.1 >prot_E-siliculosus-1a_F_contig1599.3431.1 ID=prot_E-siliculosus-1a_F_contig1599.3431.1|Name=mRNA_E-siliculosus-1a_F_contig1599.3431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=427bp SEGKCQCAPGYSHVPDLGCMDERPVWLDLKGPTHLTMKQCDKYVEHGVQVback to top mRNA from alignment at E-siliculosus-1a_F_contig1599:133..7932+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1599.3431.1 ID=mRNA_E-siliculosus-1a_F_contig1599.3431.1|Name=mRNA_E-siliculosus-1a_F_contig1599.3431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7800bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1599:133..7932+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1599:133..7932+ >mRNA_E-siliculosus-1a_F_contig1599.3431.1 ID=mRNA_E-siliculosus-1a_F_contig1599.3431.1|Name=mRNA_E-siliculosus-1a_F_contig1599.3431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2562bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1599:133..7932+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |