mRNA_E-siliculosus-1a_F_contig1597.3424.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: D8LCV3_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV3_ECTSI) HSP 1 Score: 496 bits (1278), Expect = 2.130e-171 Identity = 256/273 (93.77%), Postives = 260/273 (95.24%), Query Frame = 1
Query: 352 MKGAAGSARIAGRAGGGDPYTVAAPGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLTQRSDATPDPIGREER 1170
MKGAAGSAR+AGRAGGGDPYTVAAPGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQK VIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGR +SGG QGGGQL+YVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLTQ SDATPDPIGRE+R
Sbjct: 1 MKGAAGSARMAGRAGGGDPYTVAAPGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQK---------VIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRGSVSGGNQGGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLTQPSDATPDPIGREQR 264
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: A0A836CP51_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP51_9STRA) HSP 1 Score: 234 bits (598), Expect = 1.370e-69 Identity = 132/224 (58.93%), Postives = 160/224 (71.43%), Query Frame = 1
Query: 424 PGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGG-QLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRL 1092
PGA PL L+HGTTTVA+V DGG+IAAVDSRASMG+F+GS TT K IP+S+ I+GTMAGGAADC+FWLR LG Q +V NG ++ V AARVLA+ L G G GLS+GTMIMG D GG +GG LYYVDS+G RV+G YF+VGSGSTYAY VLD GY+ M++ AA LA RAV+ A +RDA+SGGFINV+ V+A+G T+L
Sbjct: 33 PGASPLLLAHGTTTVAMVIDGGIIAAVDSRASMGAFIGSSTTTK---------FIPISKTIVGTMAGGAADCSFWLRVLGEQVRVLTG-NGARVTVRAAARVLANVLHGLSGGGLSIGTMIMGWD-------------GGAEGGSPDLYYVDSEGTRVRGSYFAVGSGSTYAYGVLDAGYQRNMTVGAAAALAARAVQRAAFRDAYSGGFINVYHVNATGVTQL 233
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: M2W568_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W568_GALSU) HSP 1 Score: 216 bits (550), Expect = 4.190e-62 Identity = 110/230 (47.83%), Postives = 157/230 (68.26%), Query Frame = 1
Query: 424 PGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGF 1113
P + +K HGTTT++ + G++AAVDSRASMG ++GS + +K VI +++++LGTMAGGAADCTFW RYLGM+ ++FE +N ++ VA A+++L + + +G GLS+GTMIMG D+ G +YYVDS+G R+KG FSVGSGST+A VLD+GY+ MS+EEA +L +R++ HAT+RDAFSGG+INV+ + GW + +DSGF
Sbjct: 48 PPKDLVKFHHGTTTLSFIFSEGIVAAVDSRASMGQYIGSGSVKK---------VIEINKYLLGTMAGGAADCTFWERYLGMRCRIFELKNKERISVAAASKILCNTVYQYKGMGLSMGTMIMGWDKK----------------GPHIYYVDSEGTRLKGSKFSVGSGSTHALGVLDQGYKWNMSVEEACELGRRSIYHATHRDAFSGGYINVYYIGPDGWKFISHEDSGF 252
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: A0A0H5RKB4_9EUKA (Proteasome subunit beta n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RKB4_9EUKA) HSP 1 Score: 212 bits (540), Expect = 2.020e-60 Identity = 113/235 (48.09%), Postives = 153/235 (65.11%), Query Frame = 1
Query: 424 PGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLTQ 1128
P A +K +HGTTT+ V GGV+ AVDSRASMGS++GS T +K VI +++ +LGTMAGGAADC++W R+L + ++++ RNG + VA A+++L + RG+GLS GTMI G D Q G QLYY+D G R+KG FSVGSGSTYAY VLD Y+ M+ EEA +L KRA+ HAT+RDA+SGG INV++++ +GWT++ DD L Q
Sbjct: 73 PIAPDMKYAHGTTTLGFVFKGGVLIAVDSRASMGSYIGSGTVKK---------VIEINERLLGTMAGGAADCSYWERHLATECRLYQLRNGENISVAAASKILCNIFFQYRGRGLSCGTMIGGWD----------------QRGPQLYYIDDKGTRMKGPRFSVGSGSTYAYGVLDTHYKPDMTKEEAVELGKRAIYHATHRDAYSGGTINVYLIEEAGWTKMFSDDMNTLHYGQ 282
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: A0A7S1CZK1_CYCTE (Proteasome endopeptidase complex n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZK1_CYCTE) HSP 1 Score: 211 bits (538), Expect = 6.180e-60 Identity = 113/230 (49.13%), Postives = 155/230 (67.39%), Query Frame = 1
Query: 433 EPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRL---DVDDSGF 1113
+ +K + GTTT+A +GG+I +VDSR++MG+++ S T QK VI ++ ++LGTMAGGAADC+FW R LG+Q ++FE NG ++ VA A+++LA+ + RG GLS+GTM+ G D + G QLYYVD DG R+KG+YFSVGSGSTYAY VLD +RD +S+EEA DL KRA+ HAT+RDAFSGG N+F V GW ++ DV+D +
Sbjct: 91 QEIKFAKGTTTLAFKFNGGIIVSVDSRSTMGNYISSGTVQK---------VIKINPYLLGTMAGGAADCSFWERNLGVQCRMFELTNGHRISVAGASKLLANTMSSYRGYGLSMGTMVTGWD----------------ETGPQLYYVDDDGTRLKGKYFSVGSGSTYAYGVLDTYHRDDLSVEEAIDLGKRAIYHATHRDAFSGGINNLFHVTKDGWVQIHAIDVNDMHY 295
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: A0A7S2VUQ7_9EUKA (Proteasome subunit beta n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2VUQ7_9EUKA) HSP 1 Score: 211 bits (537), Expect = 1.230e-59 Identity = 110/218 (50.46%), Postives = 149/218 (68.35%), Query Frame = 1
Query: 439 LKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRL 1092
+K SHGTTT+A + GGV+ AVDSRASMGS++GS T +K VIP+S++++GTMAGGAADC+FW R L MQ ++ E R G ++ VA A+++L + + RG GLS+GTM+ G D D G + L+YVDSDG R+KG FSVGSG+TYAY +LD YR + +EA +L KRA+ HAT+RDA+SGG INVFV+ +GW ++
Sbjct: 95 IKFSHGTTTLAFIFQGGVLVAVDSRASMGSYIGSGTVKK---------VIPISRYLIGTMAGGAADCSFWERNLAMQCRLHELREGSRISVAAASKLLGNIVFQYRGYGLSMGTMMAGFD----DKKGPA-----------LFYVDSDGTRLKGNLFSVGSGATYAYGILDSEYRHDLDEKEAVELGKRAIYHATHRDAYSGGTINVFVIRETGWEQM 288
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: A0A0G4J2G1_PLABS (Proteasome subunit beta n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2G1_PLABS) HSP 1 Score: 210 bits (535), Expect = 1.260e-59 Identity = 111/235 (47.23%), Postives = 155/235 (65.96%), Query Frame = 1
Query: 424 PGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLTQ 1128
P + +K +HGTTT+ V GGV+ AVDSRASMGS++GS+T +K VI ++ +LGTMAGGAADC++W R+L + ++++ RN ++ VA A+++L++ RG+GLS GTM+ G D Q G QLYY+D DG R+KG+ FSVGSGSTYAY VLD Y+ +S EEA +L KRA+ HAT+RDA+SGG INV+V++ GWT++ +D L Q
Sbjct: 77 PLVKDMKYAHGTTTLGFVFKGGVLLAVDSRASMGSYIGSQTVKK---------VIEINDRLLGTMAGGAADCSYWERHLTFKCRLYQLRNNERITVAAASKMLSNIFYAYRGRGLSCGTMVAGWD----------------QRGPQLYYIDDDGTRLKGQKFSVGSGSTYAYGVLDTHYKYELSREEAIELGKRAIYHATHRDAYSGGTINVYVIEEQGWTKVFSNDMNTLHYGQ 286
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: A0A6U2YY24_9EUKA (Proteasome subunit beta n=2 Tax=Lotharella TaxID=74819 RepID=A0A6U2YY24_9EUKA) HSP 1 Score: 209 bits (532), Expect = 2.790e-59 Identity = 114/235 (48.51%), Postives = 153/235 (65.11%), Query Frame = 1
Query: 433 EPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLTQRSD 1137
+ +K SHGTTT+A + GGV+ AVDSRASMGS++GS T +K VIPVS++++GTMAGGAADC+FW R L MQ ++ E R G ++ VA A+++L + + RG GLS+GTM+ G D + G L+YVDSDG R+KG FSVGSG+TYAY VLD GY + ++A +L KRA+ HAT+RDA+SGG INVFV+ +GW ++ D L Q D
Sbjct: 71 DKIKFSHGTTTLAFLFKGGVLVAVDSRASMGSYIGSGTVKK---------VIPVSKYLIGTMAGGAADCSFWERNLAMQCRLHELREGKRISVAAASKLLGNVVFQYRGYGLSMGTMMAGWDE---------------KKGPGLFYVDSDGTRLKGNLFSVGSGATYAYGVLDSGYSYDLDEKQAIELGKRAIYHATHRDAYSGGTINVFVIRETGWEQMYKGDMNELHYGQYMD 281
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: A0A7S0RES2_9CHLO (Proteasome subunit beta n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RES2_9CHLO) HSP 1 Score: 208 bits (529), Expect = 3.270e-59 Identity = 113/226 (50.00%), Postives = 151/226 (66.81%), Query Frame = 1
Query: 439 LKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFL 1116
+K SHGTTT+A + GGVI AVDSRASMG ++ S+T +K VI ++ H+LGTMAGGAADC FW R LGMQ +++E N ++ VA A+++LA+ L RG GLS+GTM+ G D SG S LYYVDS+ R+KG FSVGSGS +AY VLD+GY+ M+ EEA +L ++A+ HAT+RDA+SGG ++V+ V GWT++ DD G L
Sbjct: 54 VKPSHGTTTLAFIFKGGVIVAVDSRASMGPYISSQTVKK---------VIEINPHLLGTMAGGAADCQFWQRNLGMQTRLYELNNKKRISVAGASKLLANTLFSYRGMGLSMGTMVAGWD-----DSGPS-----------LYYVDSEAQRIKGERFSVGSGSLFAYGVLDQGYKWDMTDEEARELGRKAIYHATFRDAYSGGTVSVYHVTQDGWTKVSGDDVGEL 254
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Match: F4PRF6_CAVFA (Proteasome subunit beta n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRF6_CAVFA) HSP 1 Score: 209 bits (531), Expect = 5.250e-59 Identity = 110/224 (49.11%), Postives = 154/224 (68.75%), Query Frame = 1
Query: 433 EPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKARLGEGGGTVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRSRISGGTQGGGQLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDD 1104
+P++++HGTTT+A V +GGVI AVDS+++ GS+V SRT +K VI ++ ++LGTMAGGAADC+FW R LG + +++E RN + VA A+++LA+ + +G GLS+GTMI G D+ G LYYVD+DG R+KG+ FSVGSGSTYAY VLD GY+ ++ +EA +L +RAV HAT+RDA SGGFINV+ V +GW ++ DD
Sbjct: 81 KPIEMAHGTTTLAFVFNGGVIVAVDSKSTQGSYVASRTVKK---------VIEITPNLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKT----------------GPCLYYVDNDGTRLKGQRFSVGSGSTYAYGVLDSGYKPDLTDQEAQELGRRAVYHATHRDAMSGGFINVYHVKETGWVKISSDD 279 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1597.3424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1597.3424.1 >prot_E-siliculosus-1a_F_contig1597.3424.1 ID=prot_E-siliculosus-1a_F_contig1597.3424.1|Name=mRNA_E-siliculosus-1a_F_contig1597.3424.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=352bp MATIMACSPARRRRRAQHHHHDSSSATGRRTRRLTVVLLALFSAHTTTATback to top mRNA from alignment at E-siliculosus-1a_F_contig1597:144..5766+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1597.3424.1 ID=mRNA_E-siliculosus-1a_F_contig1597.3424.1|Name=mRNA_E-siliculosus-1a_F_contig1597.3424.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5623bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1597:144..5766+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1597:144..5766+ >mRNA_E-siliculosus-1a_F_contig1597.3424.1 ID=mRNA_E-siliculosus-1a_F_contig1597.3424.1|Name=mRNA_E-siliculosus-1a_F_contig1597.3424.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2112bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1597:144..5766+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |