mRNA_E-siliculosus-1a_F_contig1596.3422.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1596.3422.1
Unique NamemRNA_E-siliculosus-1a_F_contig1596.3422.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1596.3422.1 vs. uniprot
Match: D7FPB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB4_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 7.560e-111
Identity = 175/206 (84.95%), Postives = 189/206 (91.75%), Query Frame = 1 
Query:    1 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKNNLFLVVGFLNAGTISTLGILTLFMAFWPPLLVDLAVASGAFITCMVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKSLWKQALALSSIGCAEILAIAVRHLTQFGQSTPVIAWTAQMLCGHAAAVIFMSSTQFNAAAPSMSRTSATRPNLIATMRSRSEYSASRISR 618
            MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRK+N+FLVVG LNAG ISTLG+ TLFM FWPPLLVDLAVASG+ ITC+VIIFVAVRITSFINCAMSEHAASSNEFYIEAKK+LWKQALAL SIGCA  +AIAVRHLTQFG+STP+I WTAQ LCGHAAA+IF S TQF AA PSMSR S+TRP+LIATM S SEYSA++ISR
Sbjct:    1 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGLLNAGIISTLGVGTLFMTFWPPLLVDLAVASGSAITCIVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTQFGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAA-PSMSRASSTRPSLIATMTSSSEYSATKISR 205
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BLAST of mRNA_E-siliculosus-1a_F_contig1596.3422.1 vs. uniprot
Match: D7FVJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ6_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 9.100e-38
Identity = 79/179 (44.13%), Postives = 113/179 (63.13%), Query Frame = 1 
Query:    4 LFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKNNLFLVVGFLNAGTISTLGILTLFMAFWPPLLVDLAVASGAFITCMVIIFVAVRITSFINCAMSEH-----AASSNEFYIEAKKSLWKQALALSSIGCAEILAIAVRHLTQFGQSTPVIAWTAQMLCGHAAAVIFMSSTQFNAA 525
            +F VAM+AE+W+ESLP Q+++P SFA  L   S  ++LF+V+G  N G +S LG++T F   WP    DL +  G     +V+ FVA RIT+ IN A S       + SS  FY +AK+++W QA AL  +GC  +L IA++ LT  G+STP+I  T Q+L GH  A++F S+T F+ A
Sbjct:   48 MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADLFIVGGVLTAELVVFFVASRITAVINQATSTAMGRPGSPSSRAFYFKAKRNMWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIIIETLQILTGHGGAIMFSSATSFDRA 226
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BLAST of mRNA_E-siliculosus-1a_F_contig1596.3422.1 vs. uniprot
Match: A0A6H5KVX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.690e-26
Identity = 61/155 (39.35%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:    4 LFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKNNLFLVVGFLNAGTISTLGILTLFMAFWPPLLVDLAVASGAFITCMVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKSLWKQALALSSIGCAEILAIAVRHLTQFGQSTPVIAWTAQM 468
            +F VAM+AE+W+ESLP Q+++P SFA  L   S  ++LF+V+G  N G +S LG++T F   WP    D+ V  G                      ++  + SS  FY +AK++LW QA ALS +GC  +L IA++ LT  G+STP+I  T Q+
Sbjct:   32 MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARTWPQQAADIFVVGGI---------------------LTAGSPSSRTFYSKAKRNLWIQAAALSGVGCFPMLVIAIKLLTMAGRSTPIILETLQV 165
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BLAST of mRNA_E-siliculosus-1a_F_contig1596.3422.1 vs. uniprot
Match: A0A6H5JMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.720e-16
Identity = 61/139 (43.88%), Postives = 66/139 (47.48%), Query Frame = 1 
Query:  181 MAFWPPLLVDLAVASGAFITCMVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKSLWKQALALSSIGCAEILAIAVRHLTQFGQSTPVIAWTAQMLCGHAAAVIFMSSTQFNAAAPSMSRTSATRPNLIATMRSRSEY 597
            MAFWPPLL DL V SG+ I   VI FVAVRITSFIN AMSE                                                       LCGHAAA +FMSSTQF+AAAPSMS T      LI TMRSRS++
Sbjct:    1 MAFWPPLLADLVVVSGSCIAGTVIFFVAVRITSFINRAMSE------------------------------------------------------ALCGHAAAFLFMSSTQFHAAAPSMSSTGTNHSTLITTMRSRSKH 85
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BLAST of mRNA_E-siliculosus-1a_F_contig1596.3422.1 vs. uniprot
Match: A0A6H5KV07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV07_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.310e-5
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    7 FGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKNNLFLVVGFLNAGTISTLGILTLFMAFWPPLLVDLAVASGA 231
            F +  +A FW+  LP QL+   S+A  L   S + N+ LV+G LNA T+S  GILT+   +   +  D  +A G+
Sbjct:   27 FAMMQVASFWVSGLPSQLLPAESYAARLKNASEQRNIILVLGTLNASTVSGSGILTILFPYSAKVAADTFMALGS 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1596.3422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPB4_ECTSI7.560e-11184.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVJ6_ECTSI9.100e-3844.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVX1_9PHAE3.690e-2639.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK0_9PHAE8.720e-1643.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV07_9PHAE2.310e-537.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1596contigE-siliculosus-1a_F_contig1596:25410..27748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size633
Model size633
Exons4
Ec32 orthologEc-15_004030.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1596.3422.1prot_E-siliculosus-1a_F_contig1596.3422.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1596 25410..27748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928108.7316966-CDS-E-siliculosus-1a_F_contig1596:25409..255771622928108.7316966-CDS-E-siliculosus-1a_F_contig1596:25409..25577Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1596 25410..25577 -
1696318807.5290542-CDS-E-siliculosus-1a_F_contig1596:25409..255771696318807.5290542-CDS-E-siliculosus-1a_F_contig1596:25409..25577Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1596 25410..25577 -
1622928108.7451403-CDS-E-siliculosus-1a_F_contig1596:25780..259421622928108.7451403-CDS-E-siliculosus-1a_F_contig1596:25780..25942Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1596 25781..25942 -
1696318807.541176-CDS-E-siliculosus-1a_F_contig1596:25780..259421696318807.541176-CDS-E-siliculosus-1a_F_contig1596:25780..25942Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1596 25781..25942 -
1622928108.7645497-CDS-E-siliculosus-1a_F_contig1596:26924..269871622928108.7645497-CDS-E-siliculosus-1a_F_contig1596:26924..26987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1596 26925..26987 -
1696318807.552335-CDS-E-siliculosus-1a_F_contig1596:26924..269871696318807.552335-CDS-E-siliculosus-1a_F_contig1596:26924..26987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1596 26925..26987 -
1622928108.7790747-CDS-E-siliculosus-1a_F_contig1596:27508..277481622928108.7790747-CDS-E-siliculosus-1a_F_contig1596:27508..27748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1596 27509..27748 -
1696318807.5627637-CDS-E-siliculosus-1a_F_contig1596:27508..277481696318807.5627637-CDS-E-siliculosus-1a_F_contig1596:27508..27748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1596 27509..27748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1596.3422.1

>prot_E-siliculosus-1a_F_contig1596.3422.1 ID=prot_E-siliculosus-1a_F_contig1596.3422.1|Name=mRNA_E-siliculosus-1a_F_contig1596.3422.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=211bp
MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKNNLFLVVGFLNAGT
ISTLGILTLFMAFWPPLLVDLAVASGAFITCMVIIFVAVRITSFINCAMS
EHAASSNEFYIEAKKSLWKQALALSSIGCAEILAIAVRHLTQFGQSTPVI
AWTAQMLCGHAAAVIFMSSTQFNAAAPSMSRTSATRPNLIATMRSRSEYS
ASRISRLEEC*
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mRNA from alignment at E-siliculosus-1a_F_contig1596:25410..27748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1596.3422.1 ID=mRNA_E-siliculosus-1a_F_contig1596.3422.1|Name=mRNA_E-siliculosus-1a_F_contig1596.3422.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2339bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1596:25410..27748- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGTTCGGCGTCGCCATGATGGCCGAGTTTTGGTTGGAGAGCTTGCC
GCACCAGTTGGTTTCCCCCGGCAGCTTCGCGGAGTGGTTGACAAAGGTTT
CGCGCAAAAACAACCTTTTCTTGGTTGTTGGGTTTCTCAACGCGGGGACT
ATATCGACCCTTGGCATCTTGACGCTGTTCATGGCTTTCTGGCCTCCACT
TTTGGTGGATCTTGCAGTGGCGTCCGGGGCCTTCATAACGGTGAAACACG
AGTGCGATTTACCGCGTCTAAGCTTGTGTAGTTCATCGTAACCCCATGTT
GTACCAGGTAGCATTTTCATAGCGTACCCGGTTATTGACTGCTGTTCAGC
CCAGGAATACACATGTACAGTTGGGCGGTCAGGGTTGTTTGTTTCACTGA
TGCGTGTACAACCGGGGCCGGCTCAGCAACCAATCATATATCCCTCGCAC
CTGTCAGGCCGCACGGCCAACGGGGAGAACAGAGCGGTTCCTCACGACAT
ATACATTAGTATGCGTATTTCTTCTTTCGCTTAGGTTGCTGATCGCCTGG
CCAGTTACTGTCTCTCGCCCTCCATGCCTAACAGATATGCCTATGACGAC
ACGGGGGAAACACGGATTGGTCATGGCCGAAAGTGGTTCTCGATAACGCT
GTGTCGTGTTTCAGGTTCGCTCTGAAAGCACTGAATTTCCCCCACGCTTC
TTGCTGCCACCTTCGCACGCCTTTGACCACGACTCCTTGCACCAAACGTT
TGCACGATCAGTGCATGGTTATCATCTTCGTGGCTGTTCGGATCACGAGC
TTCATCAACTGCGCTATGTCGGAGGTAGGTGTGGAGTTGAAGTGTAGGCG
CTAACCAGCGAAGGTTTCGCCCATTACACGATGGTTTAATGTCAAACGTG
ATGCTCTCAAGTAGGGACAGCGTCGAATCGTCACAGAAGGCGGCTTCACG
GTCTCGAAGAAGGTGCCTGCTTTAGACACCCACGAAATGCTTTGTTGATA
TGCGTTAATGTACGTTTTGCGTAGCCGAACTCGCTGCTTGATGCAAGGAG
TTGGATGGTTGCATGCATGATACGCTTCGATACAATTACCTCGGCCCCTA
GCACACTGCGTGTAGCATTGAAGCCTTAATGACGGAACAATTTCCTTCGC
CGTTTTCGGCATTGCGGGAAGCTTGACGTATGTATTAAACGAGCTATCTT
TTTCGTGCGTAGAGAAAATCAGGACGACGTTGTTTGTATTTATCCATCTC
TTCCACAGAATAGAGCCCGTGGTAGACTAGCAATAAATATATATTGTTGA
ACGGTGACTAATTTGAATTTATACGGTTCCCGAGCAGCATACAGCGATAT
CTCCTCCTGTGGGCAATAGGCTTGACAAGACAGTGCCATTTAGTCTTGTC
GGTAAATGCTTGAAACATCCAGACTATCGTCGAACGCCTGGCCAGCGTGA
GCCAGCTTGACTTCCACGATTGCATGTCCCGTTGTCTCCGAGGATCCTCA
AACGGCAACCACCCGATTTCAGTCGTGTGTCGTTCTCTCCCTGAGCTTCC
TTAAAGCCACCGTAGGCGACGAGTGCACATGTGGACATGAGAACGCCCGT
GTGAGCCAGCGAGTGCGTACGGGCCGGCGCATGCTTGTGTTTCAATGCCT
CCTGGTTAAGACACAGCCCCGTGTACGTATTCGTATTGGGTCGACCGCGC
TCCTACCAAAAGCTGACTAGTCAATCAACCGTTGTTGTTACAGGCAACGT
AATGTAACTTTAATGCCCGTGCTCTCGTGGCTTGTACGTGCTTCCATCTG
CATCAGCATGCAGCTAGCTCGAACGAGTTCTACATCGAGGCAAAGAAGAG
CCTCTGGAAACAAGCGCTTGCACTTAGCAGCATTGGTTGCGCCGAGATTC
TTGCTATTGCTGTCAGGCACCTTACCCAATTTGGGCAAAGCACTCCTGTC
ATCGCATGGACTGCTCAGGTTAGTTCTGCCGTGAATGTGGCTATACACCG
CGAGCGGTTGGCCGGTAAGGCTTCCGCGAAAACGTCTTCCACTCCACTTG
ACAAACGGTCTTGGGTAGATGCGAACGTTTCTATTTGTCAATAGCCGTTC
TTACCCGTCAAATCAATACAAAAATTTCGGGGTCGGGGTTAACGACGCTC
GTTCTCTTGTAAATCTGGCAGATGCTCTGTGGCCATGCGGCTGCGGTCAT
ATTCATGAGCTCGACACAGTTCAACGCGGCGGCACCATCGATGTCGAGGA
CCTCCGCCACCCGTCCGAACCTGATCGCCACCATGAGATCAAGAAGCGAA
TACTCGGCGTCGAGAATCTCAAGGTTAGAGGAGTGTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1596:25410..27748-

>mRNA_E-siliculosus-1a_F_contig1596.3422.1 ID=mRNA_E-siliculosus-1a_F_contig1596.3422.1|Name=mRNA_E-siliculosus-1a_F_contig1596.3422.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1596:25410..27748- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGTTCGGCGTCGCCATGATGGCCGAGTTTTGGTTGGAGAGCTTGCC
GCACCAGTTGGTTTCCCCCGGCAGCTTCGCGGAGTGGTTGACAAAGGTTT
CGCGCAAAAACAACCTTTTCTTGGTTGTTGGGTTTCTCAACGCGGGGACT
ATATCGACCCTTGGCATCTTGACGCTGTTCATGGCTTTCTGGCCTCCACT
TTTGGTGGATCTTGCAGTGGCGTCCGGGGCCTTCATAACGATGCTGTTCG
GCGTCGCCATGATGGCCGAGTTTTGGTTGGAGAGCTTGCCGCACCAGTTG
GTTTCCCCCGGCAGCTTCGCGGAGTGGTTGACAAAGGTTTCGCGCAAAAA
CAACCTTTTCTTGGTTGTTGGGTTTCTCAACGCGGGGACTATATCGACCC
TTGGCATCTTGACGCTGTTCATGGCTTTCTGGCCTCCACTTTTGGTGGAT
CTTGCAGTGGCGTCCGGGGCCTTCATAACGTGCATGGTTATCATCTTCGT
GGCTGTTCGGATCACGAGCTTCATCAACTGCGCTATGTCGGAGTGCATGG
TTATCATCTTCGTGGCTGTTCGGATCACGAGCTTCATCAACTGCGCTATG
TCGGAGCATGCAGCTAGCTCGAACGAGTTCTACATCGAGGCAAAGAAGAG
CCTCTGGAAACAAGCGCTTGCACTTAGCAGCATTGGTTGCGCCGAGATTC
TTGCTATTGCTGTCAGGCACCTTACCCAATTTGGGCAAAGCACTCCTGTC
ATCGCATGGACTGCTCAGCATGCAGCTAGCTCGAACGAGTTCTACATCGA
GGCAAAGAAGAGCCTCTGGAAACAAGCGCTTGCACTTAGCAGCATTGGTT
GCGCCGAGATTCTTGCTATTGCTGTCAGGCACCTTACCCAATTTGGGCAA
AGCACTCCTGTCATCGCATGGACTGCTCAGATGCTCTGTGGCCATGCGGC
TGCGGTCATATTCATGAGCTCGACACAGTTCAACGCGGCGGCACCATCGA
TGTCGAGGACCTCCGCCACCCGTCCGAACCTGATCGCCACCATGAGATCA
AGAAGCGAATACTCGGCGTCGAGAATCTCAAGGTTAGAGGAGTGTTAAAT
GCTCTGTGGCCATGCGGCTGCGGTCATATTCATGAGCTCGACACAGTTCA
ACGCGGCGGCACCATCGATGTCGAGGACCTCCGCCACCCGTCCGAACCTG
ATCGCCACCATGAGATCAAGAAGCGAATACTCGGCGTCGAGAATCTCAAG
GTTAGAGGAGTGTTAA
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