mRNA_E-siliculosus-1a_F_contig15951.3420.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15951.3420.1
Unique NamemRNA_E-siliculosus-1a_F_contig15951.3420.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: A0A651D8P3_HALSX (Inner membrane protein n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A651D8P3_HALSX)

HSP 1 Score: 70.9 bits (172), Expect = 1.130e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPASPN 114
            ALIT W+LGPGWL WAVV LL LIALWLATRPEP+SP+
Sbjct:   87 ALITAWTLGPGWLRWAVVALLALIALWLATRPEPSSPS 124
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: UPI001D09AC7C (YbaN family protein n=1 Tax=Halomonas sp. FeN2 TaxID=2832500 RepID=UPI001D09AC7C)

HSP 1 Score: 69.3 bits (168), Expect = 4.660e-14
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPASPND 117
            ALIT WSLGPGW  W V+ LLMLIA+WLATRPEP+S N+
Sbjct:   87 ALITAWSLGPGWTRWGVIALLMLIAVWLATRPEPSSSNE 125
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: UPI001FEBA8CA (YbaN family protein n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001FEBA8CA)

HSP 1 Score: 69.3 bits (168), Expect = 4.660e-14
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPASPND 117
            ALIT WSLGPGW  W V+ LLMLIA+WLATRPEP+S N+
Sbjct:   87 ALITAWSLGPGWTRWGVIALLMLIAVWLATRPEPSSSNE 125
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: A0A060B472_9GAMM (Inner membrane protein n=8 Tax=Halomonadaceae TaxID=28256 RepID=A0A060B472_9GAMM)

HSP 1 Score: 68.6 bits (166), Expect = 9.130e-14
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPAS 108
            A+ITVWSLGPGWLS AVV LLMLIALWLATRPEP+S
Sbjct:   87 AIITVWSLGPGWLSGAVVALLMLIALWLATRPEPSS 122
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: A0A0D5LYQ2_9GAMM (Inner membrane protein n=9 Tax=Halomonas TaxID=2745 RepID=A0A0D5LYQ2_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 3.670e-13
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPAS 108
            ALIT WSLGPGW  W V++LLML+A+WLATRPEP+S
Sbjct:   87 ALITAWSLGPGWTRWGVIVLLMLVAVWLATRPEPSS 122
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: A0A1J8P969_9GAMM (Inner membrane protein n=22 Tax=Halomonadaceae TaxID=28256 RepID=A0A1J8P969_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 3.670e-13
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPAS 108
            ALIT WSLGPGW+ W V+ LLMLIA+WLATRPEP+S
Sbjct:   87 ALITAWSLGPGWIRWGVIALLMLIAVWLATRPEPSS 122
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: A0A1H0FMC1_9GAMM (Inner membrane protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A1H0FMC1_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 3.670e-13
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPAS 108
            ALIT WSLGPGW  W V+ LLMLIALWLATRPEP+S
Sbjct:   87 ALITAWSLGPGWTRWGVIALLMLIALWLATRPEPSS 122
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: A0A3Q8WI13_9GAMM (Inner membrane protein n=5 Tax=Halomonadaceae TaxID=28256 RepID=A0A3Q8WI13_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 2.090e-12
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPAS 108
            A+I VWSLGPGWLS +VV LLMLIALWLATRPEP+S
Sbjct:   87 AIIIVWSLGPGWLSGSVVALLMLIALWLATRPEPSS 122
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: A0A365TKV0_9GAMM (Inner membrane protein n=2 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A365TKV0_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 4.580e-12
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPAS 108
            ALI VWSLG GWL WAVV LL +IALWLATRPEP+S
Sbjct:   87 ALIVVWSLGQGWLRWAVVALLFVIALWLATRPEPSS 122
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BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Match: A0A246S2L1_9GAMM (Inner membrane protein n=1 Tax=Halomonas campaniensis TaxID=213554 RepID=A0A246S2L1_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 8.390e-12
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 ALITVWSLGPGWLSWAVVILLMLIALWLATRPEP 102
            ALIT WSLGPGW  W V+ LLMLIA+WLATRPEP
Sbjct:   87 ALITAWSLGPGWTRWGVIALLMLIAVWLATRPEP 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15951.3420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A651D8P3_HALSX1.130e-1481.58Inner membrane protein n=1 Tax=Halomonas sp. TaxID... [more]
UPI001D09AC7C4.660e-1474.36YbaN family protein n=1 Tax=Halomonas sp. FeN2 Tax... [more]
UPI001FEBA8CA4.660e-1474.36YbaN family protein n=1 Tax=Halomonas neptunia Tax... [more]
A0A060B472_9GAMM9.130e-1488.89Inner membrane protein n=8 Tax=Halomonadaceae TaxI... [more]
A0A0D5LYQ2_9GAMM3.670e-1375.00Inner membrane protein n=9 Tax=Halomonas TaxID=274... [more]
A0A1J8P969_9GAMM3.670e-1377.78Inner membrane protein n=22 Tax=Halomonadaceae Tax... [more]
A0A1H0FMC1_9GAMM3.670e-1380.56Inner membrane protein n=2 Tax=Halomonas TaxID=274... [more]
A0A3Q8WI13_9GAMM2.090e-1283.33Inner membrane protein n=5 Tax=Halomonadaceae TaxI... [more]
A0A365TKV0_9GAMM4.580e-1280.56Inner membrane protein n=2 Tax=Halomonas sulfidaer... [more]
A0A246S2L1_9GAMM8.390e-1279.41Inner membrane protein n=1 Tax=Halomonas campanien... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15951contigE-siliculosus-1a_F_contig15951:3..122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size120
Model size120
Exons1
Hectar predicted targeting categorysignal peptide
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.S
EggNOG OGs1N7BI@1224,1SCJZ@1236,1XKZT@135619,COG2832@1,COG2832@2
EggNOG free text desc.membrane
KEGG koko:K09790
Preferred nameybaN
Seed eggNOG ortholog1504981.KO116_3363
Seed ortholog evalue6.6e-09
Seed ortholog score65.5
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928108.5874565-CDS-E-siliculosus-1a_F_contig15951:2..1221622928108.5874565-CDS-E-siliculosus-1a_F_contig15951:2..122Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15951 3..122 +
1696318807.4886665-CDS-E-siliculosus-1a_F_contig15951:2..1221696318807.4886665-CDS-E-siliculosus-1a_F_contig15951:2..122Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15951 3..122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15951.3420.1prot_E-siliculosus-1a_F_contig15951.3420.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15951 3..122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15951.3420.1

>prot_E-siliculosus-1a_F_contig15951.3420.1 ID=prot_E-siliculosus-1a_F_contig15951.3420.1|Name=mRNA_E-siliculosus-1a_F_contig15951.3420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=40bp
ALITVWSLGPGWLSWAVVILLMLIALWLATRPEPASPND*
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mRNA from alignment at E-siliculosus-1a_F_contig15951:3..122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15951.3420.1 ID=mRNA_E-siliculosus-1a_F_contig15951.3420.1|Name=mRNA_E-siliculosus-1a_F_contig15951.3420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=120bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15951:3..122+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGCTAATCACCGTTTGGTCACTCGGACCTGGCTGGTTGAGCTGGGCAGT
GGTGATCCTACTGATGCTGATTGCGCTTTGGCTAGCCACTCGGCCAGAGC
CTGCCTCTCCCAATGATTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15951:3..122+

>mRNA_E-siliculosus-1a_F_contig15951.3420.1 ID=mRNA_E-siliculosus-1a_F_contig15951.3420.1|Name=mRNA_E-siliculosus-1a_F_contig15951.3420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=240bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15951:3..122+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGCTAATCACCGTTTGGTCACTCGGACCTGGCTGGTTGAGCTGGGCAGT
GGTGATCCTACTGATGCTGATTGCGCTTTGGCTAGCCACTCGGCCAGAGC
CTGCCTCTCCCAATGATTAAGCGCTAATCACCGTTTGGTCACTCGGACCT
GGCTGGTTGAGCTGGGCAGTGGTGATCCTACTGATGCTGATTGCGCTTTG
GCTAGCCACTCGGCCAGAGCCTGCCTCTCCCAATGATTAA
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