mRNA_E-siliculosus-1a_F_contig1595.3417.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE) HSP 1 Score: 306 bits (783), Expect = 2.940e-93 Identity = 158/231 (68.40%), Postives = 181/231 (78.35%), Query Frame = 2
Query: 272 TQHKSIGEALDAIDRDVSLQFNAI----------LVKLAAINHNASVERSAQVLRDQMDVKFTMDRSMRQDVAFLRWPVPRLVCVLPAPESGAKPLEEVDRSFEQWSATLQTWCLGRKRKGKGFATRKLRLFFLCPYDRSLAECGPGGQGYEVAELLDWAKKAMPSAKVGLALASSAHRVSVGLTIPEADFEATLGSKVGGDLSTFVEESLNSGIKSVASTAGERVDGARA 934
T K IG+ +D + D +F + V + +H A +ER V RDQM+VK MDRSMRQDVAFLRWP+PRLVCVLPAPESGAKPLEE DRSFEQWSATL+ WCLG KR GKGFATRKLR+FFLCPYDRS+AECGPGGQGYEV EL++WAKKAMPSAKVGLALAS A RV +GL IPE DF+ATLG+K GG LSTF EESL+SG++SVAS AG+R+DG RA
Sbjct: 653 TALKDIGDQVDELISDHKNRFPGLGLVRSGESEETVVYSDSDHKALLERIVDVQRDQMNVKLMMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEGDRSFEQWSATLRNWCLGGKRTGKGFATRKLRMFFLCPYDRSIAECGPGGQGYEVTELVEWAKKAMPSAKVGLALASIALRVCIGLAIPEVDFKATLGTKAGGALSTFAEESLHSGVESVASIAGDRLDGGRA 883
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE) HSP 1 Score: 299 bits (765), Expect = 1.460e-90 Identity = 148/190 (77.89%), Postives = 168/190 (88.42%), Query Frame = 2
Query: 365 NHNASVERSAQVLRDQMDVKFTMDRSMRQDVAFLRWPVPRLVCVLPAPESGAKPLEEVDRSFEQWSATLQTWCLGRKRKGKGFATRKLRLFFLCPYDRSLAECGPGGQGYEVAELLDWAKKAMPSAKVGLALASSAHRVSVGLTIPEADFEATLGSKVGGDLSTFVEESLNSGIKSVASTAGERVDGARA 934
+H A V+R +LRDQM+VKF MDRS++QD+AFLRWP+PRLVCVLPAPESGAKPLEE DRSF++WSATL+ WCLG KRKGKG ATRKLRLFFLCPYDRSLAECGPGGQGYEV ELL WAKKA+P AKVGLALAS+A +V GL+IPEADFEATLG+K GG LSTFVE+SLNSG +S+AS AGER+DG A
Sbjct: 705 DHEALVKRIVNMLRDQMNVKFMMDRSIKQDLAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFDKWSATLRNWCLGGKRKGKGVATRKLRLFFLCPYDRSLAECGPGGQGYEVTELLTWAKKAIPLAKVGLALASTAFKVCTGLSIPEADFEATLGTKAGGALSTFVEDSLNSGGESMASIAGERLDGGTA 894
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI) HSP 1 Score: 296 bits (759), Expect = 2.320e-88 Identity = 150/190 (78.95%), Postives = 162/190 (85.26%), Query Frame = 2
Query: 365 NHNASVERSAQVLRDQMDVKFTMDRSMRQDVAFLRWPVPRLVCVLPAPESGAKPLEEVDRSFEQWSATLQTWCLGRKRKGKGFATRKLRLFFLCPYDRSLAECGPGGQGYEVAELLDWAKKAMPSAKVGLALASSAHRVSVGLTIPEADFEATLGSKVGGDLSTFVEESLNSGIKSVASTAGERVDGARA 934
+H A +ER VLRDQM+VKF MDRSMRQDVAFLRWP+PRLVCVLPAPES AKPLEE DRSFEQWSATL+ WC+ KR GKGFATRKLR+FFLCPYDRSLAECGPGGQGYEV ELL WAKKAMP A+VG ALAS A RV +GL IPE DFEATLG+ GG LS F EESLNSGI+SVAS AGER+DG RA
Sbjct: 981 DHKALLERIVDVLRDQMNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESRAKPLEEKDRSFEQWSATLRNWCVDGKRTGKGFATRKLRVFFLCPYDRSLAECGPGGQGYEVTELLGWAKKAMPFAEVGRALASIALRVCIGLAIPEVDFEATLGTVAGGALSKFAEESLNSGIESVASIAGERLDGGRA 1170
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI) HSP 1 Score: 201 bits (511), Expect = 1.500e-54 Identity = 100/161 (62.11%), Postives = 124/161 (77.02%), Query Frame = 2
Query: 440 SMRQDVAFLRWPVPRLVCVLPAPESGAKPLEEVDRSFEQWSATLQTWCLGRKRKGKGFATRKLRLFFLCPYDRSLAECGPGGQGYEVAELLDWAKKAMPSAKVGLALASSAHRVSVGLTIPEADFEATLGSKVGGDLSTFVEESLNSGIKSVASTAGERVD 922
S+ ++VAFL WP+P L+CVLPA ESGAKPL+E DRSFE+WS LQ C + G+G AT+KLRLFFLCP D SLAECGP GQGY+V ELL WAKKA P A++GLALAS A +V GL +P AD EA LG+ GG LS FVEE+L S ++++A+ AGER++
Sbjct: 874 SLARNVAFLLWPIPSLMCVLPARESGAKPLDERDRSFEEWSTVLQKRCSEGNKMGRGVATQKLRLFFLCPLDMSLAECGPDGQGYQVTELLSWAKKAKPLAELGLALASIAVKVCTGLAMPAADIEAVLGTNAGGVLSEFVEEALTSSVEAMATVAGERLE 1034
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: A0A6H5JXU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU4_9PHAE) HSP 1 Score: 163 bits (413), Expect = 1.850e-43 Identity = 94/163 (57.67%), Postives = 109/163 (66.87%), Query Frame = 2
Query: 365 NHNASVERSAQVLRDQMDVKFTMDRSMRQDVAFLRWPVPRLVCVLPAPESGAKPLEEVDRSFEQWSATLQTWCLGRKRKGKGFATRKLRLFFLCPYDRSLAECGPGGQGY------EVAELLDWAKKAMPSAKVGLALASSAHRVSVGLTIPEADFEATLGSK 835
+H A VER + + VKF DRS+RQD AFL+WP+PRL+C+LPAP+SGAKPLEE D SFE+WSATL+ WCLG KRKGKG ATRKLRLFFL S +E GP G+ +V ELL WAKKA P AKVGLALAS A R GL LG +
Sbjct: 262 DHKALVERIGRP--EGSGVKFMTDRSIRQDAAFLQWPIPRLLCLLPAPKSGAKPLEEKDGSFEEWSATLRKWCLGGKRKGKGVATRKLRLFFLRTTGASPSE-GPQGKASRADVRSQVTELLKWAKKAKPFAKVGLALASIALRECTGLEYLRRSSRQPLGQQ 421
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI) HSP 1 Score: 164 bits (415), Expect = 1.030e-41 Identity = 107/294 (36.39%), Postives = 156/294 (53.06%), Query Frame = 2
Query: 119 QALQGSATAIVENELERLQGLFSEIEDLHAKHTANPEDGRPARIAI--RVTRGTQHKSIGEALDAIDRDVSLQFNAILVKLAA-----INHNASVERSAQVLRDQMDVKFTMDRSMRQDVAFLRWPVPRLVCVLPAPESGAKPLEEVDRSFEQWSATLQTWCLGR-------------------KRKGKGFATRKLRLFFLCPYDRSLAECGPGGQGYEVAELLDWAKKAMPSAKVGLALASSAHRVSVGLTIPEADFEATLGSKVGGDLSTFVEESLNSGIKSVASTAGERVD 922
+A Q + A+ + +E L+ + + +++P DG + ++ G K + + DV+ + N +K+ A + N S A + + D+ + R +VA LRWP+PR VCVLPA ++ L E DRSFE+WS L+ WC + K + +G TR+LRLFFLC D+SLAECGP GQGYEV E LDW +KA P+AK+GLALAS A +V GL + FEA G+ D+S FVE++L++GI+ S AG R+D
Sbjct: 768 EAWQDTRAALRGDLVEELEPNLEAVLRKILEPSSSPGDGLAESNTLIPKLIDGALAKRLSSLCSDMQLDVNRKLNETTMKVVAGVEQVVQANLSNAAVAGLRPTERDILVGVAR----EVAILRWPIPRFVCVLPARDTR---LSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGTSE--DMSAFVEDALSAGIEGTTSKAGNRLD 1052
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: A0A6H5K561_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K561_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.680e-36 Identity = 86/184 (46.74%), Postives = 104/184 (56.52%), Query Frame = 2
Query: 374 ASVERSAQVLRDQMDVKFTMDRSMRQDVAFLRWPVPRLVCVLPAPESGAKPLEEVDRSFEQWSATLQTWCLGRKRKGKGFATRKLRLFFLCPYDRSLAECGPGGQGYEVAELLDWAKKAMPSAKVGLALASSAHRVSVGLTIPEADFEATLGSKVGGDLSTFVEESLNSGIKSVASTAGERVDG 925
A VER +LRDQ +V RWP+ L CVLP PES KPLEE++RSFE WS L++ C K++ KGFATRKL +FFLCP DRSLAECGPGGQG EV DFEAT G++ GG ST VEESL+SG +++AS+A ER+DG
Sbjct: 155 ALVERIKSILRDQTNV---------------RWPI--LACVLPTPESDVKPLEEINRSFEGWSTVLRSCCRDGKKQRKGFATRKLWMFFLCPVDRSLAECGPGGQGCEV------------------------------------DFEATPGTRPGGAFSTLVEESLDSGGEALASSAEERLDG 285
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: A0A6H5JXK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK6_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.870e-28 Identity = 75/161 (46.58%), Postives = 97/161 (60.25%), Query Frame = 2
Query: 440 SMRQDVAFLRWPVPRLVCVLPAPESGAKPLEEVDRSFEQWSATLQTWCLGRKRKGKGFATRKLRLFFLCPYDRSLAECGPGGQGYEVAELLDWAKKAMPSAKVGLALASSAHRVSVGLTIPEADFEATLGSKVGGDLSTFVEESLNSGIKSVASTAGERVD 922
S+ Q+VAF+RWP+PRLV +L AP+SG L T + C + KG+ TRKLRLFF + SLA CGPGG V ELL+WAKKA +AKVGLA+AS A +V +GL IP D A G+ G ++ VEE+ S I S+ S AG R++
Sbjct: 225 SIAQNVAFMRWPIPRLVWLLLAPDSGEPAL------------TAEQRC--NQAKGRRLVTRKLRLFFRYSHHYSLAVCGPGGA--RVTELLNWAKKAKSAAKVGLAVASIALKVCIGLAIPRMDLNAAFGASTGDVVTGVVEEAATSSIDSMTSAAGGRIE 369
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 119 bits (299), Expect = 2.400e-26 Identity = 65/135 (48.15%), Postives = 93/135 (68.89%), Query Frame = 2
Query: 2 MDTVKDLLSVGGRIEEAIKGEEAVKVRMRTRIKDYRSVLQALQGSATAIVENELERLQGLFSEIEDLHAKHTANPEDGRPARIAIRVTRGTQHKSIGEALDAIDRDVSLQFNAILVKLAAINHNASVERSAQVLR 406
+D +K+LLS+G RI +A KG +AVK +MRTR+ DY VLQ L S A ++NEL RL+GL+ EI+ LH KHTA+P D + A+ A +V RGTQHKSI E LDAID++ F I K ++I+ ++++ ++ R
Sbjct: 2 IDDIKELLSLGTRIRDAAKGADAVKTKMRTRLADYDGVLQVLLQSDFADIKNELLRLRGLYEEIDALHVKHTADPADPKWAKAAKKVNRGTQHKSIEEDLDAIDKEARQLFGIIATK-SSIDTRKTIKQILELQR 135
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Match: A0A6H5KFQ0_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ0_9PHAE) HSP 1 Score: 103 bits (257), Expect = 3.120e-21 Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 2
Query: 2 MDTVKDLLSVGGRIEEAIKGEEAVKVRMRTRIKDYRSVLQAL-QGSATAIVENELERLQGLFSEIEDLHAKHTANPEDGRPARIAIRVTRGTQHKSIGEALDAIDRDVSLQFNAILVKLAAINHNASVERSAQVLR 406
+D VK+LL+VG ++ EAI+ + K R R R+KDY S L L Q + ++EL+RL ++ EIE LH KHTA+PED R A +V RGTQHKSI E LDAID AI K ++I ++ ++ + Q L+
Sbjct: 2 IDDVKELLTVGSKVREAIEATDVAKKRRRARLKDYDSTLHVLLQSGSPDKFKSELQRLHDIYHEIEALHVKHTADPEDPTWVRFAKKVNRGTQHKSIEEDLDAIDGQALQLITAIAAK-SSIGNSKAIRQILQDLK 136 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1595.3417.1 >prot_E-siliculosus-1a_F_contig1595.3417.1 ID=prot_E-siliculosus-1a_F_contig1595.3417.1|Name=mRNA_E-siliculosus-1a_F_contig1595.3417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=311bp MDTVKDLLSVGGRIEEAIKGEEAVKVRMRTRIKDYRSVLQALQGSATAIVback to top mRNA from alignment at E-siliculosus-1a_F_contig1595:12737..14192+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1595.3417.1 ID=mRNA_E-siliculosus-1a_F_contig1595.3417.1|Name=mRNA_E-siliculosus-1a_F_contig1595.3417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1595:12737..14192+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1595:12737..14192+ >mRNA_E-siliculosus-1a_F_contig1595.3417.1 ID=mRNA_E-siliculosus-1a_F_contig1595.3417.1|Name=mRNA_E-siliculosus-1a_F_contig1595.3417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1866bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1595:12737..14192+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |