mRNA_E-siliculosus-1a_F_contig1595.3416.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1595.3416.1
Unique NamemRNA_E-siliculosus-1a_F_contig1595.3416.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: D7FRS5_ECTSI (Folate gamma-glutamyl hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS5_ECTSI)

HSP 1 Score: 659 bits (1701), Expect = 5.630e-234
Identity = 318/340 (93.53%), Postives = 326/340 (95.88%), Query Frame = 2 
Query:  149 SLPDCGGDCDFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKVEPLATNAHHKGVSPDDFVESGLDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSFTAISDWEPGMFHNRDVTASGPINGQMYGFHLSESGRTKSALAPTKDLRRQRHSQQFGRGVNMEGGRAQPPLQQSSSNRHRPLLRGT 1168
            SLPDCGGDCDFVK AYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGG+P LPEGVR        WALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPV+T DFDAENFTQPLGLLADAGESRMLSGVPT+LLEKAKV+PLATNAHHKGVSP D VESGLDTMFRV+AINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRR+GHSFT+ISDWEPGMFHNRDVTASGPINGQMYGFHLSESGRTKSALAPTKDLRRQRHSQQFGRGV+MEGGRAQPPLQQSSSNRHRPLLR T
Sbjct:   48 SLPDCGGDCDFVKAAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGHPLLPEGVR--------WALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVVTDDFDAENFTQPLGLLADAGESRMLSGVPTSLLEKAKVKPLATNAHHKGVSPGDLVESGLDTMFRVMAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRNGHSFTSISDWEPGMFHNRDVTASGPINGQMYGFHLSESGRTKSALAPTKDLRRQRHSQQFGRGVSMEGGRAQPPLQQSSSNRHRPLLRET 379
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: A0A6H5K1M4_9PHAE (Folate gamma-glutamyl hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1M4_9PHAE)

HSP 1 Score: 548 bits (1412), Expect = 1.460e-191
Identity = 262/284 (92.25%), Postives = 271/284 (95.42%), Query Frame = 2 
Query:  317 SLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKVEPLATNAHHKGVSPDDFVESGLDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSFTAISDWEPGMFHNRDVTASGPINGQMYGFHLSESGRTKSALAPTKDLRRQRHSQQFGRGVNMEGGRAQPPLQQSSSNRHRPLLRGT 1168
            S PEG R+ R +   WAL YAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVP +LLEKAKVEPLA NAHHKGVSPDDFVESGLDTMFRV+AINADRQGVRTYVSVAEA+DYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRR+GHSFT+ISDWEPGMFHNRDVTASGPINGQMY FHLSESGRT SALAPTKDLRRQRHSQQFGRGV+MEGG+AQPPLQQSSSNRHR LLRGT
Sbjct:    4 SYPEGTRRYRKVRGKWALNYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVPASLLEKAKVEPLAANAHHKGVSPDDFVESGLDTMFRVMAINADRQGVRTYVSVAEALDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRNGHSFTSISDWEPGMFHNRDVTASGPINGQMYSFHLSESGRTTSALAPTKDLRRQRHSQQFGRGVSMEGGKAQPPLQQSSSNRHRTLLRGT 287
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: F0WJZ5_9STRA (Folate gamma-glutamyl hydrolase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJZ5_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.360e-57
Identity = 103/268 (38.43%), Postives = 152/268 (56.72%), Query Frame = 2 
Query:  176 DFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKVEPLATNAHHKGVSPDDFVESG-LDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSFTAISDWEPGMFHN-RDVTASGP 973
            D++  +YV W+ +AG R +PI YDA  E L  ++ Q NG+L PGG+  + +    +  L+I         LND G  FP+WGTCLG EW+ Q  A D  ++  DFDA N + PL    DA  SR+ S + +++      +PL  N+H  G++ + F E   + + ++ +A N DR GV  ++S  EA  YP YG+Q+HPEKS F++G + DGTPH VINHS +AV  +Q  A FF +E R++   F    +    + +N R  T   P
Sbjct:   34 DYIAASYVKWVESAGGRVVPIPYDAPIEYLSDLVPQFNGILFPGGDAEVNDQATFIVRLAIA--------LNDKGTHFPIWGTCLGMEWLLQITANDKEILDHDFDAHNISLPLNFTDDARSSRLFSSMDSDVYNWLATKPLTMNSHENGITTNHFAEKEKVSSFYKALATNVDRNGVE-FISAFEAYSYPFYGVQFHPEKSMFEFGENDDGTPHEVINHSFEAVSAAQYFANFFINEARKNDQKFHDPHEERGALIYNYRTYTVKWP 292
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: A0A2D4C9F6_PYTIN (Folate gamma-glutamyl hydrolase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9F6_PYTIN)

HSP 1 Score: 213 bits (541), Expect = 2.770e-56
Identity = 110/277 (39.71%), Postives = 161/277 (58.12%), Query Frame = 2 
Query:  176 DFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGV-PTNLLEKAKVEPLATNAHHKGVSPDDFVE-SGLDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSFTAISDWEPGMFHNRDV-TASGPINGQMYGF 997
            +++  +YV W+  AG R +P+ ++A+ E L  IL Q+NG+L PGG      G R +          Y    ND+GD+FP+WGTCLG+EW+ Q  A +   +  DFDAEN + PL L   A ESR+L+G   + +    +  P+  N+HH GV P  F     L + FRV+A N DR G R +V++ EA+DYP+YG+Q+HPEK+ F+ G+D DGTP  V++HS +++ + Q  A FF +E RR+ H F         + +N    TA GP   + Y F
Sbjct:  489 EYISASYVKWIEMAGGRVVPLPFNASIEHLEEILPQLNGVLFPGGEADPSVGARFI--------YDYVVRANDNGDYFPLWGTCLGFEWLVQITAQNMSALQPDFDAENISLPLDLTPAAAESRILTGARASGVYSSLETLPITMNSHHLGVEPAHFASFERLTSFFRVLATNVDRVG-RPFVAMVEAVDYPIYGVQFHPEKNVFEHGIDDDGTPWEVVDHSFESILMGQHFANFFVNEARRNQHRFKDSHKQTAALIYNYQTSTALGPEMVEAYIF 756
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: A0A7S3HQ60_9STRA (Folate gamma-glutamyl hydrolase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ60_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.670e-54
Identity = 104/289 (35.99%), Postives = 159/289 (55.02%), Query Frame = 2 
Query:  158 DCGGDCDFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITV---DFDAENFTQPLGLLADAGESRMLSGVP---TNLLEKAKVEPLATNAHHKGVSPDDFVESG-LDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSFTAISDWEPGMFHNRDVTASGPINGQMYGFHL 1003
            +CGGDC ++  +YV ++ ++GAR +PI + AT  EL  +L  +NG+  PGG+   P   +        +     K++ND G+ FP+WGTC+G+EW+  +   D  ++       DA N++ PL   A    S +    P   TN+L K  V     N HH G+  D F ++  L+  F V++ N DR G + +VS+ EA  YP++G QWHPEK+ F+W  D +G P+  INHS DAV  SQ +A FF  + R S H+FT+ ++ +  + +N   T +     Q Y FH 
Sbjct:   38 NCGGDCLYLAASYVKYIESSGARVVPINFYATEAELDKLLPSLNGVFFPGGDAEFPPAAQ--------YTFDKVKKMNDAGEHFPLWGTCMGFEWLLMSATRDSSILDPKNGQMDAYNYSIPLDFTATYKNSALFKNAPSFVTNVLAKQNV---TMNNHHYGIWTDHFFQTPVLNDFFHVLSNNKDRNGDQ-FVSMIEAYKYPIFGSQWHPEKNNFEWAEDSEGIPNEAINHSLDAVLASQYMANFFVGQARLSKHAFTSEAEEDAALIYNYQPTKTTGSFVQEYYFHF 314
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: A0A812YFC1_SYMMI (Folate gamma-glutamyl hydrolase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YFC1_SYMMI)

HSP 1 Score: 195 bits (496), Expect = 5.300e-54
Identity = 100/284 (35.21%), Postives = 157/284 (55.28%), Query Frame = 2 
Query:  158 DCGGDCDFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVI---TVDFDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKVEPLATNAHHKGVSPDDFVES-GLDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSFTAISDWEPGMFHNRDVTASGPINGQMYGF 997
            +CGGDC ++  +YV  + ++GAR +PI Y ++ EEL  + + +NG    GG  + P+  + +   ++          ND GD+ P+WGTC+G++W+    + D  ++   T  FDA N + PL     A  S M    P ++ E    E +  N HH G+  D F+E+  L + F +++ N DRQGV  +VS  EA  YP++G QWHPEK+ F+W  + +G P+  INHS  AV +SQ    FF  ETR++ H F++  + +  + +N   T SGP   + Y F
Sbjct:   21 ECGGDCLYLAASYVKEIESSGARVVPINYYSSEEELDFLFESLNGFFFVGGGAAYPDSAQYIFDKTVA--------ANDAGDYMPLWGTCMGFQWLLIAASRDVNILDPKTGQFDAYNLSIPLDFTESAASSYMFRNAPKDVYEILATEDVTMNNHHYGIYTDHFLETDSLTSFFDMLSTNKDRQGV-DFVSTIEAFKYPIFGTQWHPEKNTFEWDKE-NGYPYEAINHSPHAVHISQWTGNFFVDETRKNDHKFSSDEEEDARLIYNYPKTRSGPDFVETYYF 294
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: A0A7S0SR75_9STRA (Folate gamma-glutamyl hydrolase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR75_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.130e-53
Identity = 94/286 (32.87%), Postives = 155/286 (54.20%), Query Frame = 2 
Query:  158 DCGGDCDFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVD---FDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKVEPLATNAHHKGVSPDDFVE-SGLDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSFTAISDWEPGMFHNRDVTASGPINGQMYGFHL 1003
            DC G C ++  +YV ++  AGAR +PI Y +T  EL  +   +NG   PGG+ S P   + +    +        E ND+GDF P+WGTC+G++W+  + A D  ++       DA N++ PL   ++A  SR+    P ++++      +  N HH G+ P+       L + + V+++N DR GV ++VS  E+ DYP+YG QWHPEK+ ++WG   +G P+  INHS +++ ++Q  A FF  + R+  HS+T   + +  +  N   T +     + Y FH 
Sbjct:   43 DCAGSCQYIAASYVKYIEAAGARVVPINYYSTTTELDELFKNLNGFFFPGGSSSFPSSAQYIFDKIV--------EANDNGDFIPLWGTCMGFQWLLISAARDDTILDPSSGVLDAYNYSIPLDFTSEASSSRLFGRAPLDVMKILSSRNVTLNNHHYGIYPEHLQSIDSLSSFYNVLSVNEDRAGV-SFVSTIESFDYPIYGTQWHPEKNIYEWGQ-TNGIPNEAINHSPESILIAQYTANFFVEQARKCSHSYTNADEEDEALISNYTPTKTTGSFQESYYFHF 318
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: A0A3M6VJF0_9STRA (Folate gamma-glutamyl hydrolase n=3 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJF0_9STRA)

HSP 1 Score: 194 bits (492), Expect = 3.340e-53
Identity = 94/242 (38.84%), Postives = 142/242 (58.68%), Query Frame = 2 
Query:  176 DFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKVEPLATNAHHKGVSPDDFVE-SGLDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRS 898
            +++  +YV W+ +AG R +PI Y+A    L  +L Q+NGLL PGG  ++ +           W  + A E+ND G +FPVW TCLG+EW+ Q   GD   +    D+ N T PL    +A  SR+ S     L    K +P+  N H +G++PD F++ S L   + V+A N DRQGV  ++S  EA +YP+Y +Q+HPEK+ F++G   DGTP+ VI+HS++ +   Q  A FF +E R++
Sbjct:   42 EYIAASYVKWVESAGGRVVPIPYNAPKPYLEQLLPQLNGLLFPGGAATVNDRAE--------WLFQLALEINDKGVYFPVWATCLGFEWLVQLTTGDVESLNKGLDSTNITLPLNFTKEAPTSRLFSQASPELYSWLKDKPITMNNHKQGITPDRFIQYSSLTNFYTVLATNVDRQGVE-FISAFEAKEYPVYAVQFHPEKNSFEYGEYLDGTPYEVIDHSREGIASGQYFANFFINEARKN 274
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: A0A024GIG4_9STRA (Folate gamma-glutamyl hydrolase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GIG4_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.960e-52
Identity = 102/276 (36.96%), Postives = 150/276 (54.35%), Query Frame = 2 
Query:  176 DFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKVEPLATNAHHKGVSPDDFVESG-LDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSFTAISDWEPGMFHN-RDVTASGPINGQMYGF 997
            D++  +YV W+ +AG R +PI Y+A  E L  I+ Q NG+L PGG   L +    +  L+I         LND G  FP+WGTCLG EW+ Q  A D  ++   FDA N + PL    +A  SR+   +  ++      +PL  N+H  G++   F +S  + + +  +A N DR GV  ++S  EA +YP+YG+Q+HPEKS F++G    GTPH VINHS +A+  SQ  A FF +E R +   F    + +  + +N R  T   P   + Y F
Sbjct:   34 DYLAASYVKWVESAGGRVVPIPYNAPIEYLSSIVPQFNGILFPGGAAELNDQATFIVRLAIA--------LNDKGTHFPIWGTCLGLEWLLQITADDKEILDQGFDASNISLPLNFTDEARSSRLFGSMNADVYNWLATKPLTMNSHVNGITTKHFEQSREVSSFYNALATNVDRNGVE-FISAFEAYNYPIYGVQFHPEKSMFEFGEKDSGTPHEVINHSFEAISASQYFANFFVNEARMNDQKFHDPHEEQAALIYNYRTYTVKSPKFVETYLF 300
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Match: A0A8K1FMN2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMN2_PYTOL)

HSP 1 Score: 187 bits (475), Expect = 9.410e-51
Identity = 95/246 (38.62%), Postives = 145/246 (58.94%), Query Frame = 2 
Query:  176 DFVKGAYVNWLANAGARSLPIRYDATPEELRPILDQVNGLLLPGGNPSLPEGVRQVRGLSIVWALKYAKELNDDGDFFPVWGTCLGWEWMAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKVEPLATNAHHKGVSPDDFVE-SGLDTMFRVVAINADRQGVRTYVSVAEAIDYPMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETRRSGHSF 910
            +++  +YV W+   G R +PI Y A  E L+ ++ Q+NGLL PGG   + E  + +  ++I        ELND G +FPVWGTCLG+EW+ Q  A D   +   FD+EN T PL     A  SRM S    ++      +P+  N H +G++P+ F + S L+  + V+A+N DR+  RT++S  EA  YP+Y +Q+HPEK+ F++G   +G P+ VI+HS +AV + Q  A FF +E R++   F
Sbjct:   43 EYLAASYVKWVEMGGGRVVPIPYHAPKEYLKELVPQLNGLLFPGGAADVNEAAKTMYDIAI--------ELNDKGVYFPVWGTCLGFEWLVQLTADDLKALESGFDSENITLPLNFTDLAPSSRMFSKAGDDIYSWLANKPITMNNHGQGITPEQFAKFSKLNEFYNVLALNVDRKD-RTFISAFEAKKYPIYAVQFHPEKNSFEYGEYENGMPYEVIDHSYEAVLMGQYFANFFINEARKNDLKF 279
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1595.3416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRS5_ECTSI5.630e-23493.53Folate gamma-glutamyl hydrolase n=1 Tax=Ectocarpus... [more]
A0A6H5K1M4_9PHAE1.460e-19192.25Folate gamma-glutamyl hydrolase n=1 Tax=Ectocarpus... [more]
F0WJZ5_9STRA6.360e-5738.43Folate gamma-glutamyl hydrolase n=1 Tax=Albugo lai... [more]
A0A2D4C9F6_PYTIN2.770e-5639.71Folate gamma-glutamyl hydrolase n=1 Tax=Pythium in... [more]
A0A7S3HQ60_9STRA2.670e-5435.99Folate gamma-glutamyl hydrolase n=1 Tax=Spumella e... [more]
A0A812YFC1_SYMMI5.300e-5435.21Folate gamma-glutamyl hydrolase n=1 Tax=Symbiodini... [more]
A0A7S0SR75_9STRA1.130e-5332.87Folate gamma-glutamyl hydrolase n=1 Tax=Chromulina... [more]
A0A3M6VJF0_9STRA3.340e-5338.84Folate gamma-glutamyl hydrolase n=3 Tax=Peronospor... [more]
A0A024GIG4_9STRA1.960e-5236.96Folate gamma-glutamyl hydrolase n=1 Tax=Albugo can... [more]
A0A8K1FMN2_PYTOL9.410e-5138.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1595contigE-siliculosus-1a_F_contig1595:2808..10441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size729
Model size1809
Exons9
Ec32 orthologEc-25_000210.1
Ec32 ortholog descriptionPeptidase C26, gamma-glutamyl hydrolase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC3.4.18.1,3.4.19.9
EggNOG OGsKOG1559@1,KOG1559@2759
EggNOG free text desc.gamma-glutamyl-peptidase activity
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006082,GO:0006508,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009987,GO:0016787,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034722,GO:0042558,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046900,GO:0051186,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901360,GO:1901564
KEGG Pathwayko00790,ko01523,ko04142,ko04210,map00790,map01523,map04142,map04210
KEGG ReactionR04242
KEGG koko:K01307,ko:K08568
KEGG rclassRC00064,RC00090
Preferred nameGGH1
Seed eggNOG ortholog2880.D7FRS5
Seed ortholog evalue9.8e-132
Seed ortholog score476.1
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928107.236905-UTR-E-siliculosus-1a_F_contig1595:2807..30111622928107.236905-UTR-E-siliculosus-1a_F_contig1595:2807..3011Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1595 2808..3011 +
1696318807.1545312-UTR-E-siliculosus-1a_F_contig1595:2807..30111696318807.1545312-UTR-E-siliculosus-1a_F_contig1595:2807..3011Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1595 2808..3011 +
1622928107.250992-UTR-E-siliculosus-1a_F_contig1595:3694..38501622928107.250992-UTR-E-siliculosus-1a_F_contig1595:3694..3850Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1595 3695..3850 +
1696318807.1745944-UTR-E-siliculosus-1a_F_contig1595:3694..38501696318807.1745944-UTR-E-siliculosus-1a_F_contig1595:3694..3850Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1595 3695..3850 +
1622928107.263969-UTR-E-siliculosus-1a_F_contig1595:5107..51891622928107.263969-UTR-E-siliculosus-1a_F_contig1595:5107..5189Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1595 5108..5189 +
1696318807.1947567-UTR-E-siliculosus-1a_F_contig1595:5107..51891696318807.1947567-UTR-E-siliculosus-1a_F_contig1595:5107..5189Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1595 5108..5189 +
1622928108.0832496-UTR-E-siliculosus-1a_F_contig1595:9803..104411622928108.0832496-UTR-E-siliculosus-1a_F_contig1595:9803..10441Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1595 9804..10441 +
1696318807.2795646-UTR-E-siliculosus-1a_F_contig1595:9803..104411696318807.2795646-UTR-E-siliculosus-1a_F_contig1595:9803..10441Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1595 9804..10441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928107.2773573-CDS-E-siliculosus-1a_F_contig1595:5189..51981622928107.2773573-CDS-E-siliculosus-1a_F_contig1595:5189..5198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 5190..5198 +
1696318807.2070825-CDS-E-siliculosus-1a_F_contig1595:5189..51981696318807.2070825-CDS-E-siliculosus-1a_F_contig1595:5189..5198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 5190..5198 +
1622928107.6400368-CDS-E-siliculosus-1a_F_contig1595:6486..65921622928107.6400368-CDS-E-siliculosus-1a_F_contig1595:6486..6592Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 6487..6592 +
1696318807.2192423-CDS-E-siliculosus-1a_F_contig1595:6486..65921696318807.2192423-CDS-E-siliculosus-1a_F_contig1595:6486..6592Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 6487..6592 +
1622928107.8001177-CDS-E-siliculosus-1a_F_contig1595:6932..70471622928107.8001177-CDS-E-siliculosus-1a_F_contig1595:6932..7047Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 6933..7047 +
1696318807.2314987-CDS-E-siliculosus-1a_F_contig1595:6932..70471696318807.2314987-CDS-E-siliculosus-1a_F_contig1595:6932..7047Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 6933..7047 +
1622928107.812744-CDS-E-siliculosus-1a_F_contig1595:7602..77051622928107.812744-CDS-E-siliculosus-1a_F_contig1595:7602..7705Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 7603..7705 +
1696318807.2402387-CDS-E-siliculosus-1a_F_contig1595:7602..77051696318807.2402387-CDS-E-siliculosus-1a_F_contig1595:7602..7705Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 7603..7705 +
1622928107.832318-CDS-E-siliculosus-1a_F_contig1595:8288..83721622928107.832318-CDS-E-siliculosus-1a_F_contig1595:8288..8372Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 8289..8372 +
1696318807.248413-CDS-E-siliculosus-1a_F_contig1595:8288..83721696318807.248413-CDS-E-siliculosus-1a_F_contig1595:8288..8372Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 8289..8372 +
1622928107.9579237-CDS-E-siliculosus-1a_F_contig1595:9190..92861622928107.9579237-CDS-E-siliculosus-1a_F_contig1595:9190..9286Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 9191..9286 +
1696318807.257018-CDS-E-siliculosus-1a_F_contig1595:9190..92861696318807.257018-CDS-E-siliculosus-1a_F_contig1595:9190..9286Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 9191..9286 +
1622928108.0404055-CDS-E-siliculosus-1a_F_contig1595:9587..98031622928108.0404055-CDS-E-siliculosus-1a_F_contig1595:9587..9803Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 9588..9803 +
1696318807.2686968-CDS-E-siliculosus-1a_F_contig1595:9587..98031696318807.2686968-CDS-E-siliculosus-1a_F_contig1595:9587..9803Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1595 9588..9803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1595.3416.1prot_E-siliculosus-1a_F_contig1595.3416.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1595 5190..9803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1595.3416.1

>prot_E-siliculosus-1a_F_contig1595.3416.1 ID=prot_E-siliculosus-1a_F_contig1595.3416.1|Name=mRNA_E-siliculosus-1a_F_contig1595.3416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=243bp
MAQTFAGDYPVITVDFDAENFTQPLGLLADAGESRMLSGVPTNLLEKAKV
EPLATNAHHKGVSPDDFVESGLDTMFRVVAINADRQGVRTYVSVAEAIDY
PMYGLQWHPEKSQFDWGLDPDGTPHYVINHSKDAVELSQVLATFFASETR
RSGHSFTAISDWEPGMFHNRDVTASGPINGQMYGFHLSESGRTKSALAPT
KDLRRQRHSQQFGRGVNMEGGRAQPPLQQSSSNRHRPLLRGT*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1595:2808..10441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1595.3416.1 ID=mRNA_E-siliculosus-1a_F_contig1595.3416.1|Name=mRNA_E-siliculosus-1a_F_contig1595.3416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7634bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1595:2808..10441+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTTCCCGAATTTTTTGTACGTGTTGACCCAACTTACCGTAGAGAGAATT
TGCCTTGCGGCGGATGTTGTTTCCAACTTGTAGCTTATAATTATCTCCTT
CTTCTCGCCCTCGTCCTGCCCTTGTCGTCGTATTTTCTCGAGCATCTCAG
CCTCCCGGACTGCGGTGGTGACTGCGATTTTGTGAAGGGCGCCTACGTTA
ATTGGTGAGAAACCCTGTGTTAGCGGGTTTGGTTGATGGTAGATACAATA
ACTATGTTGATGCTGTCGCTGGTGTTGGCAATGGTCTGTTTGCTATTGTT
GGCGTTGCCATGTTGCCGCTGGGAAAGTTTTGTTCGTCGCACATCCATAT
TGCTATTGGGAAGCAGACGGCGGTGGGCTAGTTGGAAGTTTCTCAGGCAT
GCATGGAGACTTGCAATCCGTACACGTGGACCCTAACGCAATTCAGTAAC
ACAGATGCGAGGGAGGTGACATCGAACATCGTCGGCGTCCTTTCAATTTG
AATATGTTATCTGCTCCTCAAGGTAGGCCGCGTTTGTTCGAACAACGAGC
ATCGCCAAACCACAGGAAATACCAATAATCTCAACACGAAGTAACCACTA
CGAGCGAAATCCATGTTTGCCGGCGTCTACCTCCGAGTGGACCGGACGGG
AGAGACGAATTTGTCGAGGGAGTTGTCGGAAGTCTCGATATAATAGTACC
TCCCCAAATTTGATCTCGAGAGGCGAAGGGAGAGGAAAGTTGGTATGCGC
GTGTTCCACTCTCCCTTGTTATCATGTCACGGCTTTGCTGGCCCCAGGCT
GTATCCCCGAGTCGTCGTTCGTGACCACAAACCCCGCAGAAATCGATCGC
TTGCCTGAGAACCCCACCCACCTGTGTCTTGCAAAAGGCTTGCGAATGCC
GGCGCGAGATCCCTGCCGATTCGGTACGACGCAACACCGGAAGAGTTGAG
ACCGATCCTGGACCAAGTGAACGGCCTTCTCTTACCCGGAGGGAATCCGT
CGCTACCGGAAGGTGTCAGGCAAGTGCGGGGATTATCAATCGTGTACAGG
CGCCCTGGGAATATCTGTGCGCACCAGCTTGGGTGTGTGGAGCCTCGCGC
ATCGCCGAGCAAGCGCCGTGGAGCTTCTGGCCTGAGTTTAGCATACGGCA
GACAACGAGTTGGCGATCGTTCTGTGGTTCCATGACGCGTGTCAGCCAAG
GTGTTTTGATCGCTGTTCTTGTGGGCGAAAGCAGCTCGATTCTGTGACGA
AGGGAGACGTAGTTTGACATTACGCTCCTCCAGTGATCAGAGATCGCCAC
TTTGATACCTTCTGTTATCCTACCCACCCGGCATCAAGAATGTTGACGCA
GGAGTGTTAACTGCCACCCTCACACATCGGTAACTTGCGCAGACAAGATC
TAGAAACATCTGTGACCGACCCATCTCATGAGGAATCTAGGTTGTCAATG
CAGGCCGAGACCAGTTTCTGTTTTACGGGCAAGGGTTAGGTATACGCCCT
GATCGAGCTTATAAAGAGCAGGTATCAGCGAGTTGTTGGAGTTTCCGCCA
CTGGAGATATTTCCAAGGGCGTTCGTTCTTTCGCTGGCATCTCACCTTGA
ACAATCACGGCTGTATTAACGCCGGCACAAGTAATTACCTTATCCGTATG
AGTTGGTGGAATCATGCATTTCGTTAGTACAGGTGGAAGTTGAAACACCA
GCATCTACTGCTTCGACAGCAACGAAACCTAACTCAAAGCTGTGAGTGAG
TTTTCACGAGCTGCTGTGCTGTCTGACTGTCTCTCTTGCCACCCACAAGG
CCGGCCCCGTTGTCCCCGTCTGACATCTTTGCTTCACAGTCCCACGTAAT
TGATTGAGGATCAGGATAGCCTCCAACTCTCTCTTCTACGTGACTCATCA
CACCGTTGATTTAGTACCAGCTTTTACTTAAGTTTTCATCCTCCGGTCGC
CCCCGGCGGTCTAGTGGTTAACCTCGCAAGCTTATCAGTAGCAGGGTGTG
GGTTCGGTTCTCTCTGTGGAGGGTTTCTTTGGATAGCGGGAAACGATCAG
TTCGCATGAGTATGGTATAATGATCCACATTTTCACGGCCAACGAGGGTA
ACGGACGGCTAACCCTTTTCGCAGGAGGAAAGGTGGGGCAACAACAAATA
CTACTTCATAGTAAGAACCTCCTGTAGACCTGGCTGATACATCGACACAT
ACACCGAGAAGTGTGAAGACTGGTGTCACCTATACCTGCGACGGATTCAT
ACGAACACACATCGTTCGTGTGTCTCTCATATTGGCCCATCGTGCCGAAG
GTGGGCATTGAAGTATGCGAAGGAATTGAACGACGATGGCGACTTCTTCC
CCGTGTGGGGCACGTGCCTTGGCTGGGAGTGGATGGCACAGGTGATATTC
GTTGGAATCGTCCGTGAACCAGAGTGCAAATACAGTTTTTCGACGACCAC
GTGGTGCACTGTTTTCGTTTTCTACGGAGACGCTTTTATATGTCGGAGTG
AGTCGGTCCATAACATTGTGACAGAAGAAATATTACTCGGCCCGGCGGTT
GCACTCTGTGAGCACCCCTGGAGTTTTCGAAAAACAGGTGTAGTGCTCGA
CCGTAAGCTCCGAGAAAGTGAACACATCGGACGCAACGTGCATAAACGTG
TCCTGCAAATTGCAAATTCCAATATCATGACTTTTAACAGAGAGCACGGC
AAATCATAGTTTATTTTAAGAATGCGACAAACGCTTCCTCTCAACCCCTT
GCAAGATGGTTGTTAAGTCCGAGCGTATCAATACACCTTCCCTAGAAGGA
AATGATTTGTATTCAATTGGGTTGTTTTTTTCTGTATGTCTGCAAGTTTC
AAGCGATCGGTTTCCAGAAGAGTGCGGAAAAACCTAGTTATCTGAAATCG
CAGATGAAATTTTCTGTTAAGGTTGTGGGTAAAATCTAGACAGCTCACGA
CAAGTGGGTGTATTTGTACATGAAGCATTGCACCCAAACCGTCGCCGTGT
TCGGCTCAAAACCATAGCGTTGGAATTTTGACCATGTTTACTGTGGTCCA
CTGCGGTCGCGGTAGAGGCCTTTTGACGATTGTTTCTGTTTGAAGAAAGT
GATGAAAGGAAGCGCAGTTGTTGTGTCATGAACCACCACAACCTGATGAT
GTTGATGATTGTGGATGTGGTGGTCGGCGTGCCATCGTGCGTTCGCACCA
CGACGGTAGGATGGTTTCTCTTGCCTGAGGAACAACTGCTCTTTCGACAC
AGCCTTTTCTGGCAGTTTCGTCGTTTAGGTAACGGGCGGCGGTTGCTTGA
CAAGTTCACTTCTCGATCGGTTGGCGTCGTTGGAGAGTGTATCGTTCGCG
AATATGGCTGTCCAATCGCGCCTGCCTTGAGTAGCCGAAACAACGCACTT
GTCGCAGGTGATGCTGTCCCAGCTGGCGGAATTGGTTGAGGGCTTCAAAA
GTGCTTGACGCGTGCAATGGTCTCACATTTTTGCGCGAGCTATTGTTCTG
GTCTCCTCCCGCCCATATCCCCTTCCCTCGGATGTAGATAATGCCACGTG
TATCCCAAGATTCCCCACCTCGGTGTTCGTTGGTGGAACTTTTGTCGCTA
CGTCCGTGCGTGATGTCGAGTGCCTCGCCCCCCACCCACCACCTGCTCTT
CGCTTCCACCATGGACTTTCTTTCGATAGACGTTCGCGGGAGACTACCCG
GTTATAACTGTCGATTTCGATGCCGAGAACTTTACCCAACCACTTGGTCT
CCTGGCCGATGCCGGAGAGAGTCGAATGCTGTCCGGTGAGTCGAATTGTT
TGCTGTTCGGGGATTCTTTTGTTGCTGTCGTTGCCTTTTTTTGCTGCTGT
TGTTGGAACACGATTGATACCGCCAAAATAAATGACAACGGAATAGTCTA
ACCCCGACCCTCGACCTTCCCTCTTTTCGAAGCGCACCACACGTGTATCA
CGATGCAGACCATCTCCACATTCTTTGGCCAACCGCTTGTTGCCATGTCG
AACTAACCAATCCTTAAGCATCACCCGAACATGACCCCGACTTATGCGAT
TGACGGTATCACGTTTTTCCGCCGTAGTTGAACTCATGTTTTTCTTGGCA
AAATTCGCGATGTCCTTCCAAACAGGAGTGCCAACGAACCTGCTCGAGAA
AGCCAAGGTCGAGCCCTTGGCAACCAACGCTCACCACAAGGGGGTCTCAC
CGGACGATTTCGTGGAGTCTGGCCTGGATACGATGTTCAGGTACGGCGAT
TTTCCATTGGGGGCTACACGTGTGCGAGGGCGTTGCGAAGTTTTATTGGC
AAGCCACGTATAGATGTAGAAGACCAATGAAGAGATGCGGTTTTCTTGCA
GGTAGGGCGGACGGTGGCGGCAACTACGCTTATTTCTCCTCACAACACAA
TCTGTTGAAGCTACGTATGTCGAGAACGTCGACCTACGAAAAATTAGGTG
ATTTTACAACACAATCTGTTGAAGCTACGTATGTCGAGAACGTCGACCTA
CGCAAAAGTAGGTGATTTTAGTTTGAAAATCGGAGATCACCGACTCCAAA
ACCAGGTCAAAAGGAGGGAATGCTGCCTAACTGGGGTCATAGTCAGTATC
CGATTCCGGCTGTATATTTCGCACAATAAACTGAAACGCTAAGGGTGCTA
CGTGTGCCATGGTTAGGATACAACGAGATGCAAGAAAGCGGACTTCTAAG
TCCCTCACAGCTGTTCGGTGTTCCCTTTCTTCAACTAGAGGGTAGTAGCA
CGCTCACACACCTCGTCTTATTTCGCTGGACCTTCGTCAAGTCAGGGTAG
TGGCCATCAACGCCGACAGACAGGGCGTTCGGACGTACGTGAGCGTTGCG
GAGGCGATAGACTACCCCATGTACGGGCTGCAGTGGCATCCCGAAAAGGT
CGGTTGTCGTTGCTTGCTTCAATCCAAGCAATCCCGGATGTCAATATTGT
CGGGATACAGTCGCCCACGAACAATCCGAAATCGAACGAACCTGGACTCG
TAAGCATCTGCACCATTGGAACGGTTACTATTTGCTTTGTCGTCCTGTTT
TCGACATCACGGAAACTTTCGGTAGACGAAGAGTTAGGGCACCTCTGCGA
CATACAGCACTGTTTTGACCTTGGCGCTCCGTCTCCGAATCGATTATCTT
GAATGGTTTGCCTCCGACCGAGACCAGCGTATCGCTAGGGTAAGAACCGT
CGTCGACCCGCAAATACCTATGCGGTTCCGTGAAATGGTACACGTTCCCG
CAGCGGACAGGTGGTCAGATCTCGCGTGGCAGTTCAGTTTGCTTTTGAAA
GAGAGGCCTCCCTGAGGTGATCCTATTTCGTGTTTGTCCTTCCCCAAAGC
CGCTTCGCCCTAGGTGACTGTTGGTGTCCGCCCACAACTGTCGTGCCGCC
ATGTGATACAAGTAAGCTTGCTGTGGCGAAGCGACCTTCATATCTTCTGC
ACTCTTGCCCTATCCTCGCACCGTGTTCCAGAGCCAGTTCGATTGGGGCT
TGGATCCAGACGGCACCCCTCATTACGTCATTAATCACAGCAAGGATGCG
GTGGAATTGTCGCAGGTGTGTGGAGCAATAATTACCGTGTCTGACGGTGT
ACGTCAGAACCTGGCAGGCAATGTTTCGGTTTTTGAGAGCTCGAACGCTC
CACTACTAAGAAGGTGCCATGTTCGAACGGTACGAGTTCATGCAGATCTC
GTCCAACCAAGGCCTTCCGGCAGCGGCGTCTTATTCTCCAGAATAGCAAT
TGAGTGCTTACGCTCGGGCCACCGGTTTTTGACTTACACCGAAAACCACG
GCAGTTCATTTTTCGCATCGACTAACAGCACACCAAGAGCTTGTGTTAAA
CGTATACTGGTCACGACGAGGCGTGCAGTGTAGAACGGTGGTGTGGAGAG
GGGACTACGGGGTTTGGATGGGAGAAAAACATTGGGGTACAGTGACACGG
AGGCTGATCTCTCGCAAGCGCAGGTGTCGTTTGAGGTTTTCTCGTTACAT
GGTTCCATGATTTTCTTGAAGGTCAAGTTCTCACCCTCGTCTGGATAGGG
TTTATCGATGCCGCACCATTTGTATCGGCTGTCAGAGCAACACGTGTTCC
AAGAAGATCCGACAAGGCTGAAACTGCGTGTGGTGTAGATCGTCATCAGA
ACAGGTCTCAAGAAGTTGTTTCTCCTGACGTACTAGCATCATCCCTTCCG
ACGTGCTAGCCTTGATGGCATACCTCAAACGTCAGCTGTACCTCTCAAGA
AAGCTTTCCTTGGCGAACTGCTCTTATTGCGTTTGAAGGCATCAACCCAT
CCTCGGCAATAGAGTTGTCTATTCTCCGCCACCACCTGCTCTCGCTACTC
CTTAAATGCCTACTGGACATCCCCTGTGAACAGGTGTTGGCAACGTTTTT
CGCTTCGGAAACCCGCCGCAGCGGGCATTCCTTCACTGCAATCTCCGACT
GGGAGCCTGGAATGTTCCACAACAGAGATGTAAGTCGAAGTTATGCATGG
ACCATCCACTATTGTGTCGATGTAGCTGTTTTTTGTCGACGGCGATGGCA
ACTATTTAATGTGCCCGTGTTCGAGGCTTAGTACCACATATATTATGGTC
GGATGTCTTGCTGGACGGGTCTCTCTTACATGGGCTACACCCCTTTATTG
TTTCGGTCTTGCTGTGTACCCTTGTGTTCACCCGTATCTCTTGGAACTTG
GAAACAGTGAGCTGGAAATGTCGATCATTTCTCTGTTTCACAGATTTTTA
CTGGAGTATTATTTCTCCCGTCTCCCGCAGGTCACCGCCTCTGGACCCAT
CAACGGCCAGATGTACGGCTTCCACCTGTCGGAGAGCGGCAGAACAAAGA
GTGCTTTAGCACCTACCAAAGATCTACGACGTCAAAGACATTCGCAGCAG
TTCGGAAGAGGCGTGAATATGGAGGGTGGTAGGGCACAACCGCCCTTGCA
GCAGTCGTCTTCAAACCGACATCGACCGTTGCTGCGGGGAACGTGAAGGC
GCCTAACGCCAGCACATGATACAACAACACCAGCTGAGTTATGGTCTCTG
CACGCTGCAAACACTGAAAGAAAAGGCTGAGACCCTGGCACTGCTGACCG
GGGCCGTGCTTCATAGTTTTGTGTCCGGCGCCTTGTATGCACCGCCGTTG
TACCAAGTTTTTTTATTTTGTCAACACGTGGGTGTGGAGACAGGGAACGA
CATGTGGATTTTATGGGCCGCCGTTGTACCAAGTTTTTTTTGTCAAAACG
TAGGTGTGGAGACAGGAACGACATTTATTTGGGCCTTTATTTCTTCCCGA
ATGAGTTCGCTGTCACATGTTAAGGTACCTGTACTGCACGGCAGCAGGTT
GTAAGTGGAAGGGCGTGTAGTGTGCTAAACCTCGCATCGGTGCATAGTTC
TAGCGGTAGCAGCAGAAACTGTGTCTCCAAGGGTGCGAATAACGTAGACA
GGAATGTGCGGACTGTCAAGTCCGACCGTTTAGGAATTTTGTTCTTTCCC
CACGACCCGAACAGAACAGTGGAAATGGTAACAGGGGGTAACGTATTTTG
TACATACTCACAGAATGTCATCGTCTCGTGATATTAGACTTCGTTTTAGA
GTGCACCAGTTTGGGTGTTTTTTTATTGCAAGCC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1595:2808..10441+

>mRNA_E-siliculosus-1a_F_contig1595.3416.1 ID=mRNA_E-siliculosus-1a_F_contig1595.3416.1|Name=mRNA_E-siliculosus-1a_F_contig1595.3416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1595:2808..10441+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCACAGATGGCACAGACGTTCGCGGGAGACTACCCGGTTATAACTGT
CGATTTCGATGCCGAGAACTTTACCCAACCACTTGGTCTCCTGGCCGATG
CCGGAGAGAGTCGAATGCTGTCCGACGTTCGCGGGAGACTACCCGGTTAT
AACTGTCGATTTCGATGCCGAGAACTTTACCCAACCACTTGGTCTCCTGG
CCGATGCCGGAGAGAGTCGAATGCTGTCCGGAGTGCCAACGAACCTGCTC
GAGAAAGCCAAGGTCGAGCCCTTGGCAACCAACGCTCACCACAAGGGGGT
CTCACCGGACGATTTCGTGGAGTCTGGCCTGGATACGATGTTCAGGAGTG
CCAACGAACCTGCTCGAGAAAGCCAAGGTCGAGCCCTTGGCAACCAACGC
TCACCACAAGGGGGTCTCACCGGACGATTTCGTGGAGTCTGGCCTGGATA
CGATGTTCAGGGTAGTGGCCATCAACGCCGACAGACAGGGCGTTCGGACG
TACGTGAGCGTTGCGGAGGCGATAGACTACCCCATGTACGGGCTGCAGTG
GCATCCCGAAAAGGGTAGTGGCCATCAACGCCGACAGACAGGGCGTTCGG
ACGTACGTGAGCGTTGCGGAGGCGATAGACTACCCCATGTACGGGCTGCA
GTGGCATCCCGAAAAGAGCCAGTTCGATTGGGGCTTGGATCCAGACGGCA
CCCCTCATTACGTCATTAATCACAGCAAGGATGCGGTGGAATTGTCGCAG
AGCCAGTTCGATTGGGGCTTGGATCCAGACGGCACCCCTCATTACGTCAT
TAATCACAGCAAGGATGCGGTGGAATTGTCGCAGGTGTTGGCAACGTTTT
TCGCTTCGGAAACCCGCCGCAGCGGGCATTCCTTCACTGCAATCTCCGAC
TGGGAGCCTGGAATGTTCCACAACAGAGATGTGTTGGCAACGTTTTTCGC
TTCGGAAACCCGCCGCAGCGGGCATTCCTTCACTGCAATCTCCGACTGGG
AGCCTGGAATGTTCCACAACAGAGATGTCACCGCCTCTGGACCCATCAAC
GGCCAGATGTACGGCTTCCACCTGTCGGAGAGCGGCAGAACAAAGAGTGC
TTTAGCACCTACCAAAGATCTACGACGTCAAAGACATTCGCAGCAGTTCG
GAAGAGGCGTGAATATGGAGGGTGGTAGGGCACAACCGCCCTTGCAGCAG
TCGTCTTCAAACCGACATCGACCGTTGCTGCGGGGAACGTGAGTCACCGC
CTCTGGACCCATCAACGGCCAGATGTACGGCTTCCACCTGTCGGAGAGCG
GCAGAACAAAGAGTGCTTTAGCACCTACCAAAGATCTACGACGTCAAAGA
CATTCGCAGCAGTTCGGAAGAGGCGTGAATATGGAGGGTGGTAGGGCACA
ACCGCCCTTGCAGCAGTCGTCTTCAAACCGACATCGACCGTTGCTGCGGG
GAACGTGA
back to top