mRNA_E-siliculosus-1a_F_contig15923.3407.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15923.3407.1
Unique NamemRNA_E-siliculosus-1a_F_contig15923.3407.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15923.3407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15923contigE-siliculosus-1a_F_contig15923:76..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size303
Model size383
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15923.3407.1prot_E-siliculosus-1a_F_contig15923.3407.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15923 98..400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.6063883-UTR-E-siliculosus-1a_F_contig15923:75..971622928105.6063883-UTR-E-siliculosus-1a_F_contig15923:75..97Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15923 76..97 +
1696318806.513879-UTR-E-siliculosus-1a_F_contig15923:75..971696318806.513879-UTR-E-siliculosus-1a_F_contig15923:75..97Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15923 76..97 +
1622928105.636987-UTR-E-siliculosus-1a_F_contig15923:400..4581622928105.636987-UTR-E-siliculosus-1a_F_contig15923:400..458Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15923 401..458 +
1696318806.5334496-UTR-E-siliculosus-1a_F_contig15923:400..4581696318806.5334496-UTR-E-siliculosus-1a_F_contig15923:400..458Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15923 401..458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.6234024-CDS-E-siliculosus-1a_F_contig15923:97..4001622928105.6234024-CDS-E-siliculosus-1a_F_contig15923:97..400Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15923 98..400 +
1696318806.5235748-CDS-E-siliculosus-1a_F_contig15923:97..4001696318806.5235748-CDS-E-siliculosus-1a_F_contig15923:97..400Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15923 98..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15923.3407.1

>prot_E-siliculosus-1a_F_contig15923.3407.1 ID=prot_E-siliculosus-1a_F_contig15923.3407.1|Name=mRNA_E-siliculosus-1a_F_contig15923.3407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MKQHENNYRKKKKDTSKCPPCVCLRPYNNSRRGMAWCSRRPARNTRLHRT
TTHIPITNTCRFVVKSASTAQPTTTENVNHRTLRRVGREKQLPPSTNEIR
*
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mRNA from alignment at E-siliculosus-1a_F_contig15923:76..458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15923.3407.1 ID=mRNA_E-siliculosus-1a_F_contig15923.3407.1|Name=mRNA_E-siliculosus-1a_F_contig15923.3407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=383bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15923:76..458+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAAAACAGTGCCAAATCACGGATGAAACAACACGAAAACAACTACAGAA
AAAAAAAAAAAGACACTTCAAAGTGCCCACCGTGCGTGTGTCTGCGCCCC
TACAACAACAGCCGCCGGGGCATGGCATGGTGCTCTCGCAGGCCGGCACG
AAACACACGTCTACATCGTACAACCACCCACATACCAATTACAAATACAT
GTCGCTTCGTCGTCAAAAGCGCTTCGACGGCACAGCCTACCACTACCGAA
AACGTAAACCATCGCACGCTACGCAGGGTGGGGCGTGAAAAACAACTCCC
ACCGTCCACAAACGAAATACGGTAATCAGGGGGCGCCGTCGAAAACAACC
CCCCCCCCTCCCCCCACGTGCATGCGGTGCCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15923:76..458+

>mRNA_E-siliculosus-1a_F_contig15923.3407.1 ID=mRNA_E-siliculosus-1a_F_contig15923.3407.1|Name=mRNA_E-siliculosus-1a_F_contig15923.3407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15923:76..458+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAACAACACGAAAACAACTACAGAAAAAAAAAAAAAGACACTTCAAA
GTGCCCACCGTGCGTGTGTCTGCGCCCCTACAACAACAGCCGCCGGGGCA
TGGCATGGTGCTCTCGCAGGCCGGCACGAAACACACGTCTACATCGTACA
ACCACCCACATACCAATTACAAATACATGTCGCTTCGTCGTCAAAAGCGC
TTCGACGGCACAGCCTACCACTACCGAAAACGTAAACCATCGCACGCTAC
GCAGGGTGGGGCGTGAAAAACAACTCCCACCGTCCACAAACGAAATACGG
TAAATGAAACAACACGAAAACAACTACAGAAAAAAAAAAAAAGACACTTC
AAAGTGCCCACCGTGCGTGTGTCTGCGCCCCTACAACAACAGCCGCCGGG
GCATGGCATGGTGCTCTCGCAGGCCGGCACGAAACACACGTCTACATCGT
ACAACCACCCACATACCAATTACAAATACATGTCGCTTCGTCGTCAAAAG
CGCTTCGACGGCACAGCCTACCACTACCGAAAACGTAAACCATCGCACGC
TACGCAGGGTGGGGCGTGAAAAACAACTCCCACCGTCCACAAACGAAATA
CGGTAA
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