mRNA_E-siliculosus-1a_F_contig15918.3401.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15918.3401.1
Unique NamemRNA_E-siliculosus-1a_F_contig15918.3401.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: A0A5S3PX65_9FLAO (Uncharacterized protein n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PX65_9FLAO)

HSP 1 Score: 429 bits (1103), Expect = 2.500e-148
Identity = 206/235 (87.66%), Postives = 225/235 (95.74%), Query Frame = 1
Query:    1 LFSSNDTAAESAVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSLN 705
            +F +ND+AAE+ VPT+STTGQGGSFARFKIV DYLYAVEPWSINVF+ISDLDNP+VL+EVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSG+YAFVTLR++NFCG   ESGLYIVDV+DL NPTL KTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKT+++NLVQLNHFE+INTYDVIPL+NSLLMIG+KVLYQYEYL+NEIRLLS F LN
Sbjct:  199 VFLANDSAAETNVPTSSTTGQGGSFARFKIVSDYLYAVEPWSINVFDISDLDNPKVLEEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGDYAFVTLRSSNFCGDDIESGLYIVDVSDLTNPTLSKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTDINNLVQLNHFEDINTYDVIPLSNSLLMIGEKVLYQYEYLDNEIRLLSAFDLN 433          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: A0A7Y2GPE4_9FLAO (Uncharacterized protein n=1 Tax=Pricia sp. TaxID=2268138 RepID=A0A7Y2GPE4_9FLAO)

HSP 1 Score: 353 bits (907), Expect = 1.290e-118
Identity = 175/233 (75.11%), Postives = 202/233 (86.70%), Query Frame = 1
Query:    4 FSSNDTAAESAVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSL 702
            FS+N   AE++ PT STTGQGGS ARFKIV DYLYA+E  SI+VF+ISDL+NP++LD+VY  G IETI+NQGDILFLGGTQGMYIYDISSP+KPT+VSEF HG ACDPVVV G+YAFVTLR  N CG GTESGLYIVD+++L +P LKK YP+T PYGLG K+EKLFICDG DGLKVYDK+NVD+L  LNHF++I TYDVIPL NSLLMIGDKVLYQYEYL+++IRLLS F L
Sbjct:  202 FSNN---AEASTPTRSTTGQGGSLARFKIVADYLYAIEWSSISVFDISDLENPKILDDVYTNGVIETIYNQGDILFLGGTQGMYIYDISSPEKPTFVSEFVHGTACDPVVVDGDYAFVTLRGENSCG-GTESGLYIVDISNLASPELKKFYPLTGPYGLGFKDEKLFICDGADGLKVYDKSNVDDLKLLNHFKDIITYDVIPLPNSLLMIGDKVLYQYEYLDDDIRLLSAFDL 430          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: UPI001269E763 (hypothetical protein n=1 Tax=Pelagihabitans pacificus TaxID=2696054 RepID=UPI001269E763)

HSP 1 Score: 345 bits (886), Expect = 1.840e-115
Identity = 170/226 (75.22%), Postives = 194/226 (85.84%), Query Frame = 1
Query:   28 ESAVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSLN 705
            E+AVPT+S TGQGGS ARFKIV DYLYA+E +SINVF+IS+LD P++LDEVY  G IETIFNQGDILFLGGTQGMYIYDI+SP+ P+YVSEF HG ACDPVVV G +A+VTLR  N CG G ESGLYI+DVT+L +P L+K Y + EPYGLGIK+EKLFICDG  GLKVYDK++VDNL  LNHFE I TYDVIPL NSLLMIGD VLYQYEYLE++I+LLSTF LN
Sbjct:  205 EAAVPTSSDTGQGGSLARFKIVGDYLYAIESFSINVFDISNLDEPKILDEVYTNGVIETIFNQGDILFLGGTQGMYIYDITSPETPSYVSEFVHGTACDPVVVDGNFAYVTLRGGNACG-GIESGLYIIDVTNLADPKLRKFYGLKEPYGLGIKDEKLFICDGSAGLKVYDKSDVDNLRLLNHFENIITYDVIPLQNSLLMIGDNVLYQYEYLEDQIQLLSTFDLN 429          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: A0A371JPA2_9FLAO (Uncharacterized protein n=1 Tax=Muricauda nanhaiensis TaxID=2292706 RepID=A0A371JPA2_9FLAO)

HSP 1 Score: 336 bits (861), Expect = 1.090e-111
Identity = 166/224 (74.11%), Postives = 186/224 (83.04%), Query Frame = 1
Query:   34 AVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSLN 705
            A PT S TGQGGS ARF+IV DYLYAVE  SINVF+ISDLD PEVLDEVY    IETIFNQGD+LFLGGT+GMYIYDIS P KPT+VS+F HG ACDPVVV G+YA+VTLR  N CG   ESGLYIVD++D+ NP L   YPM EPYGLGIKEEKLFICDG  GLKV+DKT+V+NLV+LNHFE+I TYDVIP+ N L+M+GD VLYQYEYLENEI+LLS   LN
Sbjct:  207 AAPT-SDTGQGGSLARFRIVGDYLYAVEWSSINVFDISDLDAPEVLDEVYTSWGIETIFNQGDLLFLGGTRGMYIYDISEPSKPTFVSDFEHGTACDPVVVDGDYAYVTLRGGNLCG-AVESGLYIVDISDIKNPELAIEYPMDEPYGLGIKEEKLFICDGASGLKVFDKTDVENLVELNHFEDIVTYDVIPMENHLIMVGDGVLYQYEYLENEIKLLSQIGLN 428          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: UPI001C07C5A2 (hypothetical protein n=1 Tax=Zobellia uliginosa TaxID=143224 RepID=UPI001C07C5A2)

HSP 1 Score: 336 bits (861), Expect = 1.230e-111
Identity = 163/230 (70.87%), Postives = 195/230 (84.78%), Query Frame = 1
Query:   13 NDTAAESAVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSL 702
            +++ AES  PT+  TGQGGS ARFKIV DYLYAVE  SI++F+I+DLDNP+VL++VYA G IETI+NQGD+LF+GGTQGMYIYDISSPDKP +VSEF HG ACDPVVV G+YAFVTLR  N CG  TESGLYIV+V++L NP L+K YP+  PYG+G K + LF+CDG  GLKVYDKTNV++L  +NHF++I TYDVIPL NSLLMIGDKVLYQY YL+N++RLLSTFSL
Sbjct:  203 SNSGAESTSPTSGDTGQGGSLARFKIVADYLYAVEWSSISIFDITDLDNPKVLEDVYANGTIETIYNQGDVLFVGGTQGMYIYDISSPDKPEFVSEFVHGTACDPVVVDGDYAFVTLRGENSCG-NTESGLYIVNVSNLTNPELEKFYPLEGPYGIGFKGDNLFVCDGDAGLKVYDKTNVNDLQLVNHFKDIITYDVIPLKNSLLMIGDKVLYQYLYLDNDLRLLSTFSL 431          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: UPI00188A048C (hypothetical protein n=2 Tax=Zobellia roscoffensis TaxID=2779508 RepID=UPI00188A048C)

HSP 1 Score: 334 bits (857), Expect = 4.970e-111
Identity = 163/233 (69.96%), Postives = 196/233 (84.12%), Query Frame = 1
Query:    4 FSSNDTAAESAVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSL 702
            F  ++++AESA PT+  TGQGGS ARFKIV+DYLYAVE  SI+VF+ISDLDNP+ L++VY  G IETI+NQGDILF+GG QGMYIYDISSP+KP Y+SEF HG ACDPVVV G+YAFVTLR  N CG  TESGLYIVDV+DL NP L+K YP+  PYG+G K++ LF+CDG  GLKVYDKT+V++L  ++HF++I TYDVIPL  SLLMIGDKVLYQY+YL N+IRLLS+FSL
Sbjct:  200 FDLSNSSAESASPTSGDTGQGGSLARFKIVQDYLYAVEWSSISVFDISDLDNPKTLEDVYVNGAIETIYNQGDILFIGGAQGMYIYDISSPEKPEYISEFVHGTACDPVVVDGDYAFVTLRGENSCG-STESGLYIVDVSDLVNPQLEKFYPLEGPYGIGFKDDNLFVCDGDAGLKVYDKTDVNDLKLVSHFKDIVTYDVIPLQESLLMIGDKVLYQYKYLNNDIRLLSSFSL 431          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: A0A3G2LA48_9FLAO (Uncharacterized protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A3G2LA48_9FLAO)

HSP 1 Score: 333 bits (854), Expect = 1.330e-110
Identity = 159/219 (72.60%), Postives = 188/219 (85.84%), Query Frame = 1
Query:   49 STTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSLN 705
            S+TGQGGS ARFKIV DYLYAVE  SI++F+ISDLDNP+ LD+VY  G +ETI+NQGDILFLGGTQGMYIYDI+SPDKP +VSEF HG ACDPVVV G+YA+VTLR  N CG  TESGLYIVD+T+L  P L+K Y +T PYG+G K++KLF+CDG DGLKVYDK+N+ NL  LNHF++I TYDVIPL NSLLMIG++VLYQYEYLEN+I LLS++SLN
Sbjct:  213 SSTGQGGSLARFKIVGDYLYAVEWGSISIFDISDLDNPKTLDDVYTNGAVETIYNQGDILFLGGTQGMYIYDITSPDKPVFVSEFIHGTACDPVVVDGDYAYVTLRGENSCG-NTESGLYIVDLTNLAEPKLEKFYSLTGPYGIGFKDDKLFVCDGADGLKVYDKSNIQNLTLLNHFKDIVTYDVIPLQNSLLMIGNQVLYQYEYLENDIELLSSYSLN 430          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: A0A844NBY6_9FLAO (Uncharacterized protein n=4 Tax=Zobellia TaxID=112040 RepID=A0A844NBY6_9FLAO)

HSP 1 Score: 329 bits (844), Expect = 4.330e-109
Identity = 164/230 (71.30%), Postives = 193/230 (83.91%), Query Frame = 1
Query:   13 NDTAAESAVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSL 702
            ND+AAES   +   TGQGGS ARFKIVEDYLYAVE  SI+VF+ISDLDNP+ L++VY  G IETI+NQGDILF+GGTQGMYIYDISSP+KP Y+SEF HG ACDPVVV G+YAFVTLR  N CG GTESGLYIVDV++L NP L+K YP+  PYG+G K+  LF+CDG DGLKVYDKT+V++L  ++HF++I TYDVIPL +SLLMIGDK LYQY+YL N+I LLSTFSL
Sbjct:  203 NDSAAESI--SGGDTGQGGSLARFKIVEDYLYAVEWSSISVFDISDLDNPKTLEDVYVNGAIETIYNQGDILFVGGTQGMYIYDISSPEKPEYISEFVHGTACDPVVVDGDYAFVTLRGENSCG-GTESGLYIVDVSNLVNPELEKFYPLKGPYGIGFKDNLLFVCDGDDGLKVYDKTDVNDLKLVSHFKDIITYDVIPLDDSLLMIGDKELYQYKYLNNDISLLSTFSL 429          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: A0A7X3D2L1_9FLAO (Uncharacterized protein n=2 Tax=Zobellia TaxID=112040 RepID=A0A7X3D2L1_9FLAO)

HSP 1 Score: 326 bits (835), Expect = 1.030e-107
Identity = 158/230 (68.70%), Postives = 193/230 (83.91%), Query Frame = 1
Query:   13 NDTAAESAVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSL 702
            + ++AE++ PT+  TGQGGS ARFKIVEDYLYAVE  SI+VF+ISDLDNP+ L++VY  G IETI+NQGDILF+GGTQGMYIYDISSP+KP +VSEF HG ACDPVVV G+YAFVTLR  N CG  TESGLYIV+V++L +P L+K YP+  PYG+G K+ +LF+CDG DGLKV+DKT+V++L  ++HF++I TYDVIPL  SLLMIGDKVLYQY+YL N IRLLST  L
Sbjct:  202 DSSSAEASSPTSGGTGQGGSLARFKIVEDYLYAVEWSSISVFDISDLDNPKTLEDVYVNGTIETIYNQGDILFIGGTQGMYIYDISSPEKPEFVSEFVHGTACDPVVVDGDYAFVTLRGENSCG-NTESGLYIVNVSNLASPELQKFYPLEGPYGIGFKDNRLFVCDGDDGLKVFDKTDVNDLKLVSHFKDIVTYDVIPLEESLLMIGDKVLYQYKYLNNSIRLLSTLDL 430          
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Match: UPI000CD48F75 (hypothetical protein n=4 Tax=Arenibacter TaxID=178469 RepID=UPI000CD48F75)

HSP 1 Score: 325 bits (832), Expect = 1.770e-107
Identity = 155/224 (69.20%), Postives = 187/224 (83.48%), Query Frame = 1
Query:   34 AVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISDLDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSEFTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKKTYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYDVIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSLN 705
            A   +S TGQGGS ARFKIV DYLYAV+  SINVFNI DL+NP+ L++VYA  +IETIFN+GD LFLG  +GMYIYDISSP  PT +SEF HG ACDPVVV G+YA+VTLR  N CG  TESGL+IVD++D+ NP L KTYPM  PYGLG+K EKLF+CDG  GLKV+DKT+V NLVQLNHF++INT+DVIP+ ++LLMIG++V+YQYEYLEN+I+L+STF LN
Sbjct:  193 AAQNSSPTGQGGSLARFKIVNDYLYAVDSHSINVFNIQDLENPKDLEDVYAGFDIETIFNRGDQLFLGSMRGMYIYDISSPATPTLISEFQHGTACDPVVVDGDYAYVTLRGGNMCG-ATESGLFIVDISDMTNPELVKTYPMDGPYGLGVKGEKLFVCDGTSGLKVFDKTDVQNLVQLNHFKDINTFDVIPMEDNLLMIGEEVIYQYEYLENKIKLISTFKLN 415          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15918.3401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S3PX65_9FLAO2.500e-14887.66Uncharacterized protein n=1 Tax=Maribacter algarum... [more]
A0A7Y2GPE4_9FLAO1.290e-11875.11Uncharacterized protein n=1 Tax=Pricia sp. TaxID=2... [more]
UPI001269E7631.840e-11575.22hypothetical protein n=1 Tax=Pelagihabitans pacifi... [more]
A0A371JPA2_9FLAO1.090e-11174.11Uncharacterized protein n=1 Tax=Muricauda nanhaien... [more]
UPI001C07C5A21.230e-11170.87hypothetical protein n=1 Tax=Zobellia uliginosa Ta... [more]
UPI00188A048C4.970e-11169.96hypothetical protein n=2 Tax=Zobellia roscoffensis... [more]
A0A3G2LA48_9FLAO1.330e-11072.60Uncharacterized protein n=2 Tax=Flavobacteriaceae ... [more]
A0A844NBY6_9FLAO4.330e-10971.30Uncharacterized protein n=4 Tax=Zobellia TaxID=112... [more]
A0A7X3D2L1_9FLAO1.030e-10768.70Uncharacterized protein n=2 Tax=Zobellia TaxID=112... [more]
UPI000CD48F751.770e-10769.20hypothetical protein n=4 Tax=Arenibacter TaxID=178... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15918contigE-siliculosus-1a_F_contig15918:27..734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size708
Model size708
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
COG Functional cat.S
EggNOG OGs1HYS1@117743,4NG4W@976,COG5276@1,COG5276@2
EggNOG free text desc.LVIVD repeat
Seed eggNOG ortholog143224.JQMD01000002_gene2596
Seed ortholog evalue2.7e-86
Seed ortholog score325.1
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928104.6718657-CDS-E-siliculosus-1a_F_contig15918:26..7341622928104.6718657-CDS-E-siliculosus-1a_F_contig15918:26..734Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15918 27..734 +
1696318806.0605447-CDS-E-siliculosus-1a_F_contig15918:26..7341696318806.0605447-CDS-E-siliculosus-1a_F_contig15918:26..734Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15918 27..734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15918.3401.1prot_E-siliculosus-1a_F_contig15918.3401.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15918 27..734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15918.3401.1

>prot_E-siliculosus-1a_F_contig15918.3401.1 ID=prot_E-siliculosus-1a_F_contig15918.3401.1|Name=mRNA_E-siliculosus-1a_F_contig15918.3401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=236bp
LFSSNDTAAESAVPTASTTGQGGSFARFKIVEDYLYAVEPWSINVFNISD
LDNPEVLDEVYAQGNIETIFNQGDILFLGGTQGMYIYDISSPDKPTYVSE
FTHGRACDPVVVSGEYAFVTLRANNFCGYGTESGLYIVDVTDLNNPTLKK
TYPMTEPYGLGIKEEKLFICDGPDGLKVYDKTNVDNLVQLNHFEEINTYD
VIPLTNSLLMIGDKVLYQYEYLENEIRLLSTFSLN*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig15918:27..734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15918.3401.1 ID=mRNA_E-siliculosus-1a_F_contig15918.3401.1|Name=mRNA_E-siliculosus-1a_F_contig15918.3401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15918:27..734+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTATTCAGTTCAAATGATACTGCGGCAGAGTCAGCTGTTCCTACAGCATC TACTACAGGCCAAGGGGGTTCTTTTGCACGTTTTAAAATTGTAGAAGATT ATTTGTATGCAGTTGAGCCATGGAGTATTAATGTTTTTAATATTTCAGAT TTGGATAACCCAGAAGTATTGGACGAAGTATATGCACAGGGAAATATTGA AACGATTTTTAATCAAGGAGATATTTTATTTTTAGGAGGTACACAAGGCA TGTATATTTATGATATCTCTTCACCAGACAAACCTACCTACGTATCTGAA TTCACACATGGTAGAGCTTGTGATCCCGTTGTTGTAAGTGGCGAATATGC TTTCGTTACTCTACGTGCTAATAATTTTTGTGGATATGGAACTGAAAGTG GTCTTTATATTGTTGATGTTACAGATCTCAATAATCCGACATTGAAGAAA ACGTATCCAATGACGGAACCTTATGGTTTAGGAATTAAAGAAGAAAAACT ATTTATATGTGATGGTCCTGATGGTCTAAAAGTATACGACAAGACCAATG TTGACAATCTCGTTCAGTTAAATCATTTTGAAGAAATCAATACATATGAT GTGATTCCGCTGACAAACTCTCTTTTGATGATTGGAGACAAAGTACTTTA TCAATATGAATATCTTGAAAATGAGATACGATTGTTAAGTACTTTTAGTC TAAACTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15918:27..734+

>mRNA_E-siliculosus-1a_F_contig15918.3401.1 ID=mRNA_E-siliculosus-1a_F_contig15918.3401.1|Name=mRNA_E-siliculosus-1a_F_contig15918.3401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1416bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15918:27..734+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTATTCAGTTCAAATGATACTGCGGCAGAGTCAGCTGTTCCTACAGCATC
TACTACAGGCCAAGGGGGTTCTTTTGCACGTTTTAAAATTGTAGAAGATT
ATTTGTATGCAGTTGAGCCATGGAGTATTAATGTTTTTAATATTTCAGAT
TTGGATAACCCAGAAGTATTGGACGAAGTATATGCACAGGGAAATATTGA
AACGATTTTTAATCAAGGAGATATTTTATTTTTAGGAGGTACACAAGGCA
TGTATATTTATGATATCTCTTCACCAGACAAACCTACCTACGTATCTGAA
TTCACACATGGTAGAGCTTGTGATCCCGTTGTTGTAAGTGGCGAATATGC
TTTCGTTACTCTACGTGCTAATAATTTTTGTGGATATGGAACTGAAAGTG
GTCTTTATATTGTTGATGTTACAGATCTCAATAATCCGACATTGAAGAAA
ACGTATCCAATGACGGAACCTTATGGTTTAGGAATTAAAGAAGAAAAACT
ATTTATATGTGATGGTCCTGATGGTCTAAAAGTATACGACAAGACCAATG
TTGACAATCTCGTTCAGTTAAATCATTTTGAAGAAATCAATACATATGAT
GTGATTCCGCTGACAAACTCTCTTTTGATGATTGGAGACAAAGTACTTTA
TCAATATGAATATCTTGAAAATGAGATACGATTGTTAAGTACTTTTAGTC
TAAACTAACTATTCAGTTCAAATGATACTGCGGCAGAGTCAGCTGTTCCT
ACAGCATCTACTACAGGCCAAGGGGGTTCTTTTGCACGTTTTAAAATTGT
AGAAGATTATTTGTATGCAGTTGAGCCATGGAGTATTAATGTTTTTAATA
TTTCAGATTTGGATAACCCAGAAGTATTGGACGAAGTATATGCACAGGGA
AATATTGAAACGATTTTTAATCAAGGAGATATTTTATTTTTAGGAGGTAC
ACAAGGCATGTATATTTATGATATCTCTTCACCAGACAAACCTACCTACG
TATCTGAATTCACACATGGTAGAGCTTGTGATCCCGTTGTTGTAAGTGGC
GAATATGCTTTCGTTACTCTACGTGCTAATAATTTTTGTGGATATGGAAC
TGAAAGTGGTCTTTATATTGTTGATGTTACAGATCTCAATAATCCGACAT
TGAAGAAAACGTATCCAATGACGGAACCTTATGGTTTAGGAATTAAAGAA
GAAAAACTATTTATATGTGATGGTCCTGATGGTCTAAAAGTATACGACAA
GACCAATGTTGACAATCTCGTTCAGTTAAATCATTTTGAAGAAATCAATA
CATATGATGTGATTCCGCTGACAAACTCTCTTTTGATGATTGGAGACAAA
GTACTTTATCAATATGAATATCTTGAAAATGAGATACGATTGTTAAGTAC
TTTTAGTCTAAACTAA
back to top