mRNA_E-siliculosus-1a_F_contig1590.3397.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1590.3397.1
Unique NamemRNA_E-siliculosus-1a_F_contig1590.3397.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: D8LK18_ECTSI (Aldehyde dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK18_ECTSI)

HSP 1 Score: 796 bits (2055), Expect = 3.290e-283
Identity = 495/560 (88.39%), Postives = 499/560 (89.11%), Query Frame = 1
Query:    1 SKAGRDPSEGSVVDGADPLGVHVEAFVEGEEDSRDTAEEEKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKQNGXXX------GIRDYDYFDFGFDLDYPGFGDDLLYNQAEGAAAAPAFEGLAAVAGAVGXXXXXXXXXXXXXXXXXXXXXXLVRVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------PARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRKADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAMXXXXXXXXXXXXXXXXXXXXX-ATRYGTGLAGGTSKRATD 1641
            S+AGRDPS GS VDGADPLGVHVEAFVEGEEDSRDT EEEKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDK   XXX      GIRDYDYFDFGFDLDYPGFGDDLLYNQ EGAAAA AFEGLAAVAGAVG                             RTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQP  ARR LPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      PARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRK D EGGDP+NGGGYVVPFTLEVGWPGRGRGRI+ NPSPGAEE RILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGV DVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAMXXXXXXXXXXXXXXXXXXXX  AT+YGTGLAGG SKRATD
Sbjct:  194 SRAGRDPSGGSPVDGADPLGVHVEAFVEGEEDSRDTVEEEKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKXXXXXXXXXXXXGIRDYDYFDFGFDLDYPGFGDDLLYNQTEGAAAALAFEGLAAVAGAVGGGSGQ------------------------RTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQP--ARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGEGPARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRK-DTEGGDPSNGGGYVVPFTLEVGWPGRGRGRII-NPSPGAEE-RILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVADVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAMXXXXXXXXXXXXXXXXXXXXGRATQYGTGLAGGKSKRATD 724          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: A0A6H5JP99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP99_9PHAE)

HSP 1 Score: 676 bits (1744), Expect = 1.430e-233
Identity = 453/673 (67.31%), Postives = 465/673 (69.09%), Query Frame = 1
Query:    1 SKAGRDPSEGSVVDGADPLGVHVEAFVEGEEDSRDTAEEEKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKQNGXXXGIRDYDYFDFGFDLDYPGFGDDLLYNQAEGAAAAPAFEGLAAVAGAVGXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------LVRVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVF-------------------------------------------------AVSSGVVSSYDDEGRLKWQDRR---GPKWTR----KADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAMXXXXXXXXXXXXXXXXXXXXX----------ATRYGTGLAGGTSKRATD 1641
            S+AGR PS GSVVDGADPLGVHVEAFVEGEEDSRDTAEEEKMS EEKG+RAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKQNG   GIRDYDYFDFGFDLDYPGFG DLL NQ EG AAA AFEGLAAVAGAVG                                                                                  LVRVVLARTRDGLEAVELSTGKPLSAVALPAA GTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMG+LSEEPTPSQPQPARR LPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVG ASPAII R SAG  AA    XXXXXXXXXXXXXXXXXXXXXXXXX                                                         A+  GV        +L+ +      G  W +    +  AEGGDP+NGGGYVVPFTLEVGW GRGR RI TNP PGAEE RILV+GQDKMCVYDRGGRLAGS PLAAPPSQRPVLGDFDGDGV DVL+VGWSGAVAGYALAPDPGVRAMFVAVLALVAAM  XXXXXXXXXXXXXXXXXXX          ATRYGTGLAGG S RATD
Sbjct:  226 SRAGRHPSGGSVVDGADPLGVHVEAFVEGEEDSRDTAEEEKMSAEEKGKRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKQNGGGSGIRDYDYFDFGFDLDYPGFGGDLLSNQTEGTAAALAFEGLAAVAGAVGGGGGRQYRRSLLNHLPHAWSAPSDTRLEITALHRRGTGDRRNGVSAGGVVGEGGGEDHPXXXXXXXXXXXXXXXXXXXXXXGLVRVVLARTRDGLEAVELSTGKPLSAVALPAATGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGYLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGVASPAIIQRGSAGAGAATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGXXXXXXXXXXXXXXXXRGSRALRRGVCREQRGSEQLRRRGAAKVAGSPWAQVDPERWGAEGGDPSNGGGYVVPFTLEVGWLGRGRRRI-TNPPPGAEE-RILVLGQDKMCVYDRGGRLAGSIPLAAPPSQRPVLGDFDGDGVADVLIVGWSGAVAGYALAPDPGVRAMFVAVLALVAAMLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRYGTGLAGGKSSRATD 896          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: A0A7S2B999_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B999_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.990e-35
Identity = 109/349 (31.23%), Postives = 162/349 (46.42%), Query Frame = 1
Query:  484 VVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHE----GVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRKADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVA 1518
            VV A +  G+EAV L  GKP+ A+ALP       G+Y D+NGD ++DH+  V         H ++       + HLS     ++ +    LLPPC A+A+SG+P REQLFN SLC   G+L  +++R  +  +R    S   EV  A P  + R                                     P  +D +FAVSSGVV+SY  +G L WQ ++ P W   A              + F  ++                   ++ ILV G+D++ ++   G +  S+ LA  P +RP+L D +GDG +DV++V   GAV GYAL+  PG    F  ++ L+A
Sbjct:  127 VVFAYSEHGVEAVTLHHGKPVFALALP-----KGGLYADVNGDNLIDHLSVVEQH------HANQDNPASPTLSHLSGSAVHARVRD-HGLLPPCSAVALSGIPAREQLFNGSLCDHHGSLLSLRDRQERVFNRKRRMSNHEEVRGAEPITVERPQ---------------------FLGRLVAQHAVTSAPKFYDTIFAVSSGVVTSYRSDGELNWQVQKAPVWGENA--------------LGFISQL-----------------PRQDEILVTGEDQVMLFSPTGSILASSKLAQAPLRRPLLVDANGDGAIDVVIV-TEGAVWGYALSYSPGGGGAFRLLVTLLA 410          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: A0A6P3YZM5_ZIZJJ (uncharacterized protein LOC107407575 n=4 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P3YZM5_ZIZJJ)

HSP 1 Score: 115 bits (287), Expect = 2.720e-23
Identity = 106/355 (29.86%), Postives = 150/355 (42.25%), Query Frame = 1
Query:  475 LVRVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVFAVSSGVVSSYDD----EGRL-KWQDRRGPKWTRKADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAM 1524
            L  VV+A  ++G+EAV L+TG+ L  + L      + G++ D+NGDGV+DHVQAVG  G +      + V  G +              +L PC+A+A SG+P REQLFNAS+CH +   F      S+   RS   +  LEV  A+P +IPRD                                     +  D VF  + G V+SY       G + +WQ   G  W+      G   A   G VVP        G               ++ IL  G+ +  V   GG +  S  L APP+   V  DF  DG+ D+++V  +G V G+     PG       V  L+  M
Sbjct:  388 LPNVVVAHQKEGIEAVHLATGRTLCKLHLQ-----EGGLHADINGDGVLDHVQAVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNASICHHSPFNFFQHGEFSRNFGRSQDVA-SLEV--ATPILIPRDDG-----------------------------HRHRKGSHGDVVFLTNRGEVTSYSPGLHGHGAIWRWQLTTGAAWSNLPSPSGLMEA---GTVVPTLKAFSLRGHDN------------QQMILAAGEQEAVVISPGGSILASVGLPAPPTHALVCEDFSNDGLTDIILVTSTG-VYGFVQTRQPGALFFSTLVGCLILVM 670          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: A0A2Z7BFW1_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BFW1_9LAMI)

HSP 1 Score: 114 bits (285), Expect = 4.880e-23
Identity = 103/353 (29.18%), Postives = 147/353 (41.64%), Query Frame = 1
Query:  484 VVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGA-LFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVFAVSSGVVSSY-----DDEGRLKWQDRRGPKWTRKADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAM 1524
            VV+A  ++G+EA+ L++G+ L  + L      + G++ D+NGDGV+DHVQ VG  G +      + V  G +              +L PC+A+A SG+P REQLFNAS+CH +   LF+  E        S   SLD+    A+P +IPR                                      +  D VF  + G V+SY       +    WQ   G  W++     G   ++    + PF L          R+  NP      E IL  G  +  V   GG L  +  L APP+   V  DF  DG+ DV+VV  S  V G+     PG       V  L+  M
Sbjct:  395 VVVAHEKEGIEAIHLASGRTLCKLHLQ-----EGGLHADINGDGVLDHVQVVGGNGAE------QSVVSGSME-------------VLRPCWAVATSGVPVREQLFNASICHHSPFNLFQHGEFSRSYGRNSDVTSLDV----ATPILIPRSDG-----------------------------HRHRMGSHGDVVFLTNRGEVTSYAPGLHGHDANWNWQRLTGATWSKLPSPSGMMESDVVPTLKPFPL----------RMHDNP------EMILAAGDQEAVVLTPGGSLLATIDLPAPPTHALVCEDFSNDGLTDVIVV-TSNGVYGFVQTRQPGALFFSTLVGCLIVVM 673          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: A0A7I8K498_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K498_SPIIN)

HSP 1 Score: 111 bits (278), Expect = 3.720e-22
Identity = 95/341 (27.86%), Postives = 148/341 (43.40%), Query Frame = 1
Query:  475 LVRVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGA-LFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVFAVSSGVVSSYD-----DEGRLKWQDRRGPKWTRKADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPG 1479
            L  VV+A  ++G+EA+ L++G+ L  + LP     + G++ D+NGDGV+DHVQAVG RG      + + V  G +              +L PC+A+A SG+P REQLFN S+C  A   LF      ++   R+++ +    +  A+P ++PR                                      +  D +F  + G +++Y      ++   +WQ   G  WT      G   A     VVP TL+                 G + E ++  G  +  V   GG +  S  L A P+   VLGDF GDG+ D+++   SG V G+     PG
Sbjct:  395 LPNVVVAHEKEGIEAIHLASGRTLCKLHLP-----EGGLHADINGDGVLDHVQAVGGRG------VEQTVVSGSME-------------VLRPCWAVATSGVPVREQLFNVSICQHAHFNLFYHSGDFARTFGRAAAAADTQSLEVATPILLPRPDG-----------------------------HRHRKGSHGDVIFLNNRGEMTAYSPGLHGEDAVWRWQITTGASWTNPPSPAGMAEA---AAVVP-TLKA-----------FRLRAGDQREVVIAAGDQEAAVVSPGGVVLASVDLPAAPTHALVLGDFSGDGLADIILQ-TSGGVYGFVQTRQPG 666          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: A0A7N0UBT2_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UBT2_KALFE)

HSP 1 Score: 110 bits (276), Expect = 6.450e-22
Identity = 102/357 (28.57%), Postives = 153/357 (42.86%), Query Frame = 1
Query:  484 VVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDL-EVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVFAVSSGVVSSY-----DDEGRLKWQDRRGPKWTRKADAEGGDPANGGGYVVP----FTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAM 1524
            VV+A  ++G+EAV L+TG+ +  + L     T+ G++ D+NGDGV+DHVQ VG  G +      + V  G +              +L PC+A+A SG+P REQLFNAS+CH +   F + +      SR+  R+ D+  +  A+P +IP+D                                     +  D +F  + G V+SY     D E   +WQ   G  W+      G   +   G V+P    F+L V                  ++E IL  G  +  V   GG +  S  L APP+   +  DF  DG+ D++VV  S  V G+     PG       V  L+  M
Sbjct:  395 VVVAHQKEGIEAVHLATGRTICKLHL-----TEGGLHADINGDGVLDHVQVVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNASICHHSH--FNIFQH--GDFSRAYGRAPDVTSLEVATPILIPKDDG-----------------------------HKHRKGSHGDVIFLTNRGEVTSYSPSTHDHEAIWQWQMLTGATWSNLPSPSGMMES---GTVIPTLKAFSLRVY----------------DKQEIILAAGDQEAVVLSPGGSILTSVDLPAPPTHALLTEDFSNDGLTDLIVV-TSNGVYGFVQTRQPGALFFSTLVGCLIIVM 674          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: A0A843WSK9_COLES (Uncharacterized protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WSK9_COLES)

HSP 1 Score: 107 bits (268), Expect = 2.500e-21
Identity = 99/352 (28.12%), Postives = 147/352 (41.76%), Query Frame = 1
Query:  484 VVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVFAVSSGVVSSYD-----DEGRLKWQDRRGPKWTRKADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAM 1524
            VV+A  ++G+EAV L+TG+ +  + LP     + G++ D+NGDGV+DHVQAVG  G +      + V  G +              +L PC+A+A SG+P REQLFN S+CH            ++   R++  S+ LEV  A+P ++PRD                                     +  D VF  S G V++Y       +   +WQ   G  WT      G   +     VVP                 +     ++E IL  G  +  V    G L  S  L A P+   VL DF+ DG+ D++++  SG V G+     PG       V  L+  M
Sbjct:  172 VVVAHEKEGIEAVHLATGRTICKLHLP-----EGGLHADVNGDGVLDHVQAVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNVSICHHTHFNLFQHGDFARAFGRTTDTSM-LEV--ATPILVPRDDG-----------------------------HKHRKGSHGDVVFLTSRGEVTAYSPGLHGQDALWRWQLLTGATWTNLPSPSGMMES----LVVPTLKSF------------HLRAHDKQEVILAAGDQEAVVISPSGSLLASVELPASPTHALVLEDFNNDGLTDIILLTSSG-VYGFVQTRQPGALFFSTLVGCLIVIM 450          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: S8CAN9_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CAN9_9LAMI)

HSP 1 Score: 108 bits (270), Expect = 3.700e-21
Identity = 94/353 (26.63%), Postives = 143/353 (40.51%), Query Frame = 1
Query:  484 VVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLE-VGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVFAVSSGVVSSYDD-----EGRLKWQDRRGPKWTRKADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAM 1524
            VV+   ++G+E + L++G+ L   +         G++ D+NGDGV+DHVQ  G  G      +   V  G +              +L PC+A+A SG+P REQLFNAS+CH +   F      S    R   R +D++ +  A+P +IPR+  G                                  +R D +F  + G V+SY       +    WQ   G  W+      G   +     VVP  L            +     G  +  IL  G+ +  V   GG +  +  L APP+   V+ DF  DG+ D++VV  +G V G+     PG       V  L+  M
Sbjct:  397 VVVIHEKEGIEVLHLASGRTLCKASREKFRIIQGGLHADINGDGVLDHVQVFGANG------VERTVMAGSME-------------VLRPCFAVATSGVPVREQLFNASICHHSPFNFIQYGDFS----RGFGREIDMKSLEVATPILIPRNDGG---------------------------GHKRRKGSRGDIIFLTNRGEVTSYSPGLHGHDVTWNWQILTGATWSNLPSPSGLMESR---RVVPTLLPF---------PLKRHDDGRRQRLILAAGEQEAVVISPGGSVKATVELPAPPTHAVVVDDFSNDGLNDLIVVAANGGVYGFVQTRQPGAVFFSTLVGCLIVVM 687          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Match: A0A445M4A6_GLYSO (Uncharacterized protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A445M4A6_GLYSO)

HSP 1 Score: 108 bits (270), Expect = 3.780e-21
Identity = 95/353 (26.91%), Postives = 149/353 (42.21%), Query Frame = 1
Query:  484 VVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLPPCYALAVSGLPPREQLFNASLCHDAGA-LFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFDAVFAVSSGVVSSYDD-----EGRLKWQDRRGPKWTRKADAEGGDPANGGGYVVPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGSTPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVAVLALVAAM 1524
            VV+A  ++G+EA+ L++G+ +  + L      + G++ D+NGDGV+DHVQAVG  G +      + V  G +              +L PC+A+A SG+P REQLFN S+CH     LF+  E     +  S   SL++    A+P +IPR                                      +  D +F  + G ++SY       +   +WQ   G  W+      G     GGG V+P    +        R+  N      +E IL  G+ +  +   GG L  +  L  PP+   +  DF  DG+ D+++V  S  V G+     PG     + V  L+  M
Sbjct:  418 VVVAHQKEGIEALHLASGRTICKLHLQ-----EGGLHADINGDGVLDHVQAVGGNGAE------QTVVSGSME-------------VLRPCWAIATSGVPIREQLFNVSICHYTHFNLFQHGELYRSYSQGSDIASLEV----ATPILIPRSDG-----------------------------HRHRKGSHGDVIFLTNRGEITSYSPGLHGHDAIWQWQQSTGVTWSNLPSPSG--VMEGGGLVIPTLKPLSL------RLHDN------QEMILAAGEQEAVIISPGGSLLATIELPGPPTHVLIAEDFSNDGLTDLILV-TSNGVYGFVQTRQPGALFFSMLVGCLIVVM 698          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK18_ECTSI3.290e-28388.39Aldehyde dehydrogenase, putative n=1 Tax=Ectocarpu... [more]
A0A6H5JP99_9PHAE1.430e-23367.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B999_9STRA5.990e-3531.23Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6P3YZM5_ZIZJJ2.720e-2329.86uncharacterized protein LOC107407575 n=4 Tax=Rhamn... [more]
A0A2Z7BFW1_9LAMI4.880e-2329.18Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A7I8K498_SPIIN3.720e-2227.86Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A7N0UBT2_KALFE6.450e-2228.57Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A843WSK9_COLES2.500e-2128.13Uncharacterized protein (Fragment) n=1 Tax=Colocas... [more]
S8CAN9_9LAMI3.700e-2126.63Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A445M4A6_GLYSO3.780e-2126.91Uncharacterized protein n=2 Tax=Glycine subgen. So... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1590contigE-siliculosus-1a_F_contig1590:24787..30140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1644
Model size1644
Exons8
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs28H9E@1,2QPN1@2759
Seed eggNOG ortholog2880.D8LK18
Seed ortholog evalue2.7e-230
Seed ortholog score804.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1590.3397.1prot_E-siliculosus-1a_F_contig1590.3397.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1590 24787..30140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928104.130798-CDS-E-siliculosus-1a_F_contig1590:24786..251251622928104.130798-CDS-E-siliculosus-1a_F_contig1590:24786..25125Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 24787..25125 -
1696318805.7862136-CDS-E-siliculosus-1a_F_contig1590:24786..251251696318805.7862136-CDS-E-siliculosus-1a_F_contig1590:24786..25125Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 24787..25125 -
1622928104.1447833-CDS-E-siliculosus-1a_F_contig1590:25765..259141622928104.1447833-CDS-E-siliculosus-1a_F_contig1590:25765..25914Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 25766..25914 -
1696318805.80603-CDS-E-siliculosus-1a_F_contig1590:25765..259141696318805.80603-CDS-E-siliculosus-1a_F_contig1590:25765..25914Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 25766..25914 -
1622928104.1623642-CDS-E-siliculosus-1a_F_contig1590:26603..269131622928104.1623642-CDS-E-siliculosus-1a_F_contig1590:26603..26913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 26604..26913 -
1696318805.8185315-CDS-E-siliculosus-1a_F_contig1590:26603..269131696318805.8185315-CDS-E-siliculosus-1a_F_contig1590:26603..26913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 26604..26913 -
1622928104.1796246-CDS-E-siliculosus-1a_F_contig1590:27352..274751622928104.1796246-CDS-E-siliculosus-1a_F_contig1590:27352..27475Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 27353..27475 -
1696318805.8269758-CDS-E-siliculosus-1a_F_contig1590:27352..274751696318805.8269758-CDS-E-siliculosus-1a_F_contig1590:27352..27475Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 27353..27475 -
1622928104.1955743-CDS-E-siliculosus-1a_F_contig1590:28379..284691622928104.1955743-CDS-E-siliculosus-1a_F_contig1590:28379..28469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 28380..28469 -
1696318805.8351064-CDS-E-siliculosus-1a_F_contig1590:28379..284691696318805.8351064-CDS-E-siliculosus-1a_F_contig1590:28379..28469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 28380..28469 -
1622928104.2087178-CDS-E-siliculosus-1a_F_contig1590:28932..291401622928104.2087178-CDS-E-siliculosus-1a_F_contig1590:28932..29140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 28933..29140 -
1696318805.8433526-CDS-E-siliculosus-1a_F_contig1590:28932..291401696318805.8433526-CDS-E-siliculosus-1a_F_contig1590:28932..29140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 28933..29140 -
1622928104.2214322-CDS-E-siliculosus-1a_F_contig1590:29317..296251622928104.2214322-CDS-E-siliculosus-1a_F_contig1590:29317..29625Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 29318..29625 -
1696318805.8512733-CDS-E-siliculosus-1a_F_contig1590:29317..296251696318805.8512733-CDS-E-siliculosus-1a_F_contig1590:29317..29625Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 29318..29625 -
1622928104.2344427-CDS-E-siliculosus-1a_F_contig1590:30023..301401622928104.2344427-CDS-E-siliculosus-1a_F_contig1590:30023..30140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 30024..30140 -
1696318805.8590198-CDS-E-siliculosus-1a_F_contig1590:30023..301401696318805.8590198-CDS-E-siliculosus-1a_F_contig1590:30023..30140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 30024..30140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1590.3397.1

>prot_E-siliculosus-1a_F_contig1590.3397.1 ID=prot_E-siliculosus-1a_F_contig1590.3397.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=548bp
SKAGRDPSEGSVVDGADPLGVHVEAFVEGEEDSRDTAEEEKMSEEEKGRR
AAEHFSLFALDGETGEVRWSHGGGAHHGAQDKQNGGGGGIRDYDYFDFGF
DLDYPGFGDDLLYNQAEGAAAAPAFEGLAAVAGAVGGGGGRRLPEAGGVP
AATGGGGGLVRVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVD
LNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRLLP
PCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLE
VGAASPAIIPRDSAGVAAAAATGPATARSSSGARRGARSGGGAGGGEGPA
RFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRKADAEGGDPANGGGYV
VPFTLEVGWPGRGRGRIVTNPSPGAEEERILVVGQDKMCVYDRGGRLAGS
TPLAAPPSQRPVLGDFDGDGVVDVLVVGWSGAVAGYALAPDPGVRAMFVA
VLALVAAMLVVAAVHVPPPPSSSSRGGGGATRYGTGLAGGTSKRATD*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1590:24787..30140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1590.3397.1 ID=mRNA_E-siliculosus-1a_F_contig1590.3397.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1590:24787..30140- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCAAAGGCCGGTCGGGACCCCAGCGAGGGCTCTGTGGTTGACGGGGCCGA CCCCCTGGGCGTTCATGTGGAGGCGTTTGTGGAAGGGGAGGAGGACAGCC GGGACACTGCCGAAGAGGTGCGTGTGGGCGTCCCTTCTCTTGTCCTCAAG GCGGCGGGGTAAGGGGTGAGGCGGCTCGAAGTGAACGACGACTGTGGCGG TGTTGGTGCGGTACTATTTTGCGGCGGATGGTGACGTGGTGTGCATCGTG TGGTGGTGACGGGCGGGGGGTTAGAGGGGGCGGGGGGGGGGGGGGCAGAT TTTCCACGGCTTATTTGTATGCTGCCATCTGGTGCAGAATATTTTGCGTA ATTGCTGCAGCCGCAATCTGCTGGAGGCTGCAACACTTGCCCTATGAATA AGAAACGCCCGGCAAATCCACCTTTTTGTTTGTCGCTGCTGTTGGTTTAT CACCCGCCGCTGACACCGCTTCCTTCCTCGTCTTTTTTGTCTTGCCCGGC TGTTTCTTGCGTCAGGAGAAGATGAGCGAGGAGGAGAAAGGGAGGAGAGC CGCCGAGCACTTCTCGCTCTTCGCGCTTGACGGCGAGACGGGCGAGGTCC GCTGGAGCCACGGCGGGGGTGCTCATCACGGCGCGCAGGACAAGCAGAAC GGCGGTGGCGGCGGGATCAGGGACTACGACTACTTCGACTTCGGCTTCGA CCTCGACTACCCCGGCTTCGGCGACGACCTCCTCTACAACCAGGCGGAGG GTGCCGCAGCGGCCCCCGCGTTCGAGGGCCTCGCGGCCGTGGCCGGCGCC GTCGGCGGCGGAGGCGGGCGGCGGTACCGGCGGTCCCTCCTCAACCACTT GCCCCACGCCTGGTCCGCCCCGTCCGACACTCGGCTCGAGATCACGGCCC TCCACCGAAGAGGCACGGGTGACAGGCGCAACGGCGTTAGCTCCGGTGGC GTCGTCGGGGAAGGGGGCGGGGAGGATCACCCCGCCGCCGGCGGACGAAG GCTTCCCGAAGCGGGGGGGGTTCCCGCAGCGACGGGGGGGGGTGGAGGGT TGGTGAGGGTCGTCCTCGCGAGGACGAGGGACGGGCTCGAGGCGGTGGAG CTGTCCACGGGGAAGCCGCTCAGCGCCGTCGCGCTGCCCGCCGCCGCGGG GACGGACGCCGGGGTGTACGTGGACCTGAACGGCGACGGCGTCGTGGATC ACGTCCAGGTGAGGACCTCAAGAAGGAATGGTGGAGGACGGTGCCATTGG ATAAGGCGGGGCGAGGGACAGGGAGGGGGAGAGAAAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGGGGGGAGGAGGAAGGGAGGAGGGGA AGGGAGGAGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGACGGACAGAGAGAGATAGAGGGACAGAGAGATA GAGATATATCGACAGACAAATAGACAGACAGACAGAGAAGGAAGTTTCTT TTTGTTATTCCTGGCCCCGGTGCGAATTCATTTGTCCTTGCGGTGATCGG GATTGGGCAGAGGGTGTACCACACATATGCATACTAAAGCTGAGTTTTGG CTTGCCTCTGACCCCTTTCCATACATCCCTCCATGGGGGCGGGCGGGCGG GCGGCGGTTTCGACTGGGCAGGCGGTGGGCACGCGCGGAGGGCAAGGGTG GGGGCATCTTCACGAGGGGGTGGCCATGGGCCATCTGTCCGAGGAGCCCA CGCCCTCCCAGGTTAGTTGGTTGAGGCTGCTGCTGCTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGTCGTCGTTGCTTGTGTC GCGTTATTGTGTAGGCGACGCGTCGACGACCCATCACTTGCCCCCCTCTC CTGGCAAACGTAGGCCAACAACAACTAGGCGATCAAGAACATGCTCTAGC GTAGAAGTAGTCTAGCGTTAAAACGAGGGTTGCGAGCGTGATGCTCGCGC GTTCACGATCAGTACGAAAAACAACGCTTTTGCCGAGCAGCGTCTAGAAT AACCCTTACTTGACTGTGCCGACTGACGAATCAAGACGTTGACCCGAAGA ACCGAAGCTGTCGCCACTTGTTCGCCGGGGCCACCCGCACTATTTGAAGT ACGTGGCAATTGTCTTTGGCGCGTGCCTCGGTTCCCTTGTCCGATCGTCG AGCATGTCGTGGTGCTTGCTTACTCTGAGCGTTTCAACTTGGCGTCACCA AAAAGTTAACGAAAAACTGGTCTGGCGTGCGCTACAGAGAATATAGTCAA AGAATAAAACGTTTGGGGCACTGGGTGATGTGCCCAGGCGGGGGCTCGAA GTGTGTCTCGTGTACTTGCGGGTATTCATAGGCTATTGCGTCGCTTGCTT CGGCGCTATTGAGCTTTGTCTACACGGAGCAGCAGGCGTTACCTCACCTA CAAGTATGGTTATTTTGCAGCAGCAGTTACAACCTCTGTTGCGACACAGC TTTCGGGGGATACATCCACCAGCTCGGCATCGAGCTACAACGTGAAAAGA CGGCTGTGGCACTCGGCGGTACTGATACAGACGTAAATCTACCGTTTTCC CCACGCTCTCCACCTCATCCCGTTGCTATTTTCACTCTTTCTTTCTCTCC CCACGAAAAAAAAAGCCGCAGCCGGCGCGACGGCTTCTTCCCCCGTGCTA CGCCCTCGCGGTGAGCGGCCTTCCCCCTAGAGAGCAGCTCTTCAACGCCT CCCTTTGCCACGACGCCGGAGCTCTTTTCGAAGTACAGGTACGTACAGCA GTAGGTGGTGCGTTCGTCCTGCTTGCCTGCCTGCCATGCGGTCGGCCTGA GGATTGTTCAGTTCAGGTGGCGCGGCACGGAGCGAGATCCTACGTGCGAG GGTGGCCCGTTCGCTCGGAGAGCTTCACAGCAGAACCCGTCATGGCCGAA GAAGGCATTCGTTGTATCTGCCCCCCCCCCCCTGTGTTGTTCTGCGCCAG TTCGAAAGGGTTTCGGAAAACACGCCTGCGTTGAGTCCCACCGGTGTCGG CTGTAGCCCCTTCCTCTTCCCCCCACCCCCCACCCCCCACCCCCTTGCCG TCTTTCACCATCACAACAATTTCAGCACTACCGGTTGCCGAACACACGCC GGAATCTCCCCTCCATCCCGTGCATCCATTCATCCTCCCTCCACCCTCTC CTACAATCTTGAAAAAAAAACAAACAGGAACGCCTTAGCAAGCCCAACTC CCGCTCATCCTCACGATCCCTGGACCTAGAGGTCGGAGCCGCATCCCCGG CCATCATCCCAAGAGACTCGGCGGGGGTGGCGGCGGCGGCGGCCACGGGG CCCGCCACCGCCCGCTCGAGCTCAGGGGCAAGAAGGGGAGCACGCTCGGG AGGGGGAGCGGGGGGGGGAGAGGGTCCCGCGCGCTTCGACGCGGTGTTTG CCGTGAGCAGCGGGGTCGTGAGCAGCTACGACGACGAGGGGCGGCTAAAG TGGCAGGATCGCCGCGGGCCCAAGTGGACCCGGAAAGGTGGGGTGCTTGA TTTTTGACCGATGCTGCTTGCCGTAGTCGGCTGAGGAGGTCGACCGGCCG GCAGGCCCCATCGGTTTTGGCCCTGTTTGGGCGTTAAAGAGGTGGTGATG CGCTGAACCATAGCTTGGGGGCATGTGGGGTGCTTCAGAGACGGAAAAAA AAGGTGTATCGTCGAGGAGTAATGTGGAGCTTGGTGTGCGTGTGTTGTGA TGGGTCGTGGAATCGTCGTTGACGAACGGAGGATTTGTCATGTTCAAGCG TTTGCTCAGGACAGATCTCTCTCTCTCTCCCTCTCTCTCCGAGACGTCTC GGATGCTTTCGCGCATTTGCCGAGTCGCGAGTTTCGAAACCTTGCGAACA AGCCCCCGACAAATGTGTTATGTGCGTGACAATTGTATTCATTTGTCTTT CTGGTTTGTTTAAACTGTGCGTTCGTTGAAGGTTTGTCGTGATAACCACC GTTCTGACTCGGTGCTGCGCACAACCACTCGTCGACCAATTTGCAATGTT CTTGGTCGTTGTACCTGCTCAAATAACAACATTTTCATCCATATGAACAC CTGTTTTTCCGTTGCTACCGGCCCCTGCTTGGGGGGGTGTTGTATATAAT AAGCAAATCGCTTGTTTTCGTCACCCGTCGCCCCTCTGCCCTCATCCTTC ATCGCCGTCGGCTTTCTTCGCGAGAGCAGACGCCGAAGGAGGAGACCCCG CCAACGGGGGCGGTTACGTGGTCCCCTTCACCCTGGAGGTCGGCTGGCCT GGTCGCGGCCGGGGAAGGATCGTCACCAACCCTTCCCCTGGCGCCGAGGA GGAGCGAATTCTGGTGGTGGGGCAGGTGAGAGAACGCAGGCCGCATGTAC TGTACGATATGAGCCACCAAGGTGAAGATTCAGGGCCAGAACAGACCGGA AGTCGCCGCAGGACCTCCCTTGGCTACCTCGGTCTTCCCGTGGACCCGTG CGACATGAAGCGTGCGGCATTGCGCGGTCATCCGCGCGCGAAAACAACAG CACTTCGTCGTTTTTCTTTTTTGTTTCTCTGTCGGCAATCTCGAGACCCT TTTTCCCATCCGCTGTCCACTGCCACCGCTGCTGCCGCTATCATCGTGTA TTGTTTTTCTTGCGATTTTTCTGCTATTTGGCTAACGACAGAGTTGATAC ACTGTCATGACCCCCTGGTTCCTCTACCGCCCCGACGGCATTCCTCCGCG TCGCTCCTCACACCCATGCGCGCACGACTCACCTCTCACACCCGTCTTAG GTGCACTAACCCTCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCGGGGGCC ACCCCCAACCCCCCGGGCCAGCTGGGCGCGGCCCGCCGCCGGGGNNNNNN NNNNGTCGGGGTTTCGGGCGGTTCGCTTCCCCTTTTCCCCTTCTTGGGGT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCGCGGGGGGCA ACCTCAAAACACCAGGACAAGATGTGCGTGTACGACCGCGGGGGCCGCTT GGCCGGATCCACCCCTCTCGCCGCCCCGCCCTCCCAGCGCCCGGTGCTCG GCGACTTCGACGGAGACGGCGTGGTCGACGTTCTGGTCGTGGGGTGGAGC GGGGCGGTGGCCGGCTACGCCCTCGCTCCGGACCCGGGAGTCCGTGCGAT GTTCGTGGCGGTGTTGGCGCTCGTGGCGGCGATGCTGGTGGTCGCCGCGG TGCACGTTCCGCCGCCGCCTTCGTCGTCGTCGAGGGGAGGGGGGGGGGCG ACGCGGTATGGGACGGGGCTGGCTGGAGGGACGTCTAAGCGCGCGACGGA CTAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1590:24787..30140-

>mRNA_E-siliculosus-1a_F_contig1590.3397.1 ID=mRNA_E-siliculosus-1a_F_contig1590.3397.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1590:24787..30140- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCAAAGGCCGGTCGGGACCCCAGCGAGGGCTCTGTGGTTGACGGGGCCGA
CCCCCTGGGCGTTCATGTGGAGGCGTTTGTGGAAGGGGAGGAGGACAGCC
GGGACACTGCCGAAGAGTCAAAGGCCGGTCGGGACCCCAGCGAGGGCTCT
GTGGTTGACGGGGCCGACCCCCTGGGCGTTCATGTGGAGGCGTTTGTGGA
AGGGGAGGAGGACAGCCGGGACACTGCCGAAGAGGAGAAGATGAGCGAGG
AGGAGAAAGGGAGGAGAGCCGCCGAGCACTTCTCGCTCTTCGCGCTTGAC
GGCGAGACGGGCGAGGTCCGCTGGAGCCACGGCGGGGGTGCTCATCACGG
CGCGCAGGACAAGCAGAACGGCGGTGGCGGCGGGATCAGGGACTACGACT
ACTTCGACTTCGGCTTCGACCTCGACTACCCCGGCTTCGGCGACGACCTC
CTCTACAACCAGGCGGAGGGTGCCGCAGCGGCCCCCGCGTTCGAGGGCCT
CGCGGCCGTGGCCGGCGCCGTCGGCGGCGGAGGCGGGCGGCGGAGAAGAT
GAGCGAGGAGGAGAAAGGGAGGAGAGCCGCCGAGCACTTCTCGCTCTTCG
CGCTTGACGGCGAGACGGGCGAGGTCCGCTGGAGCCACGGCGGGGGTGCT
CATCACGGCGCGCAGGACAAGCAGAACGGCGGTGGCGGCGGGATCAGGGA
CTACGACTACTTCGACTTCGGCTTCGACCTCGACTACCCCGGCTTCGGCG
ACGACCTCCTCTACAACCAGGCGGAGGGTGCCGCAGCGGCCCCCGCGTTC
GAGGGCCTCGCGGCCGTGGCCGGCGCCGTCGGCGGCGGAGGCGGGCGGCG
GCTTCCCGAAGCGGGGGGGGTTCCCGCAGCGACGGGGGGGGGTGGAGGGT
TGGTGAGGGTCGTCCTCGCGAGGACGAGGGACGGGCTCGAGGCGGTGGAG
CTGTCCACGGGGAAGCCGCTCAGCGCCGTCGCGCTGCCCGCCGCCGCGGG
GACGGACGCCGGGGTGTACGTGGACCTGAACGGCGACGGCGTCGTGGATC
ACGTCCAGGCTTCCCGAAGCGGGGGGGGTTCCCGCAGCGACGGGGGGGGG
TGGAGGGTTGGTGAGGGTCGTCCTCGCGAGGACGAGGGACGGGCTCGAGG
CGGTGGAGCTGTCCACGGGGAAGCCGCTCAGCGCCGTCGCGCTGCCCGCC
GCCGCGGGGACGGACGCCGGGGTGTACGTGGACCTGAACGGCGACGGCGT
CGTGGATCACGTCCAGGCGGTGGGCACGCGCGGAGGGCAAGGGTGGGGGC
ATCTTCACGAGGGGGTGGCCATGGGCCATCTGTCCGAGGAGCCCACGCCC
TCCCAGGCGGTGGGCACGCGCGGAGGGCAAGGGTGGGGGCATCTTCACGA
GGGGGTGGCCATGGGCCATCTGTCCGAGGAGCCCACGCCCTCCCAGCCGC
AGCCGGCGCGACGGCTTCTTCCCCCGTGCTACGCCCTCGCGGTGAGCGGC
CTTCCCCCTAGAGAGCAGCTCTTCAACGCCTCCCTTTGCCACGACGCCGG
AGCTCTTTTCGAAGTACAGCCGCAGCCGGCGCGACGGCTTCTTCCCCCGT
GCTACGCCCTCGCGGTGAGCGGCCTTCCCCCTAGAGAGCAGCTCTTCAAC
GCCTCCCTTTGCCACGACGCCGGAGCTCTTTTCGAAGTACAGGAACGCCT
TAGCAAGCCCAACTCCCGCTCATCCTCACGATCCCTGGACCTAGAGGTCG
GAGCCGCATCCCCGGCCATCATCCCAAGAGACTCGGCGGGGGTGGCGGCG
GCGGCGGCCACGGGGCCCGCCACCGCCCGCTCGAGCTCAGGGGCAAGAAG
GGGAGCACGCTCGGGAGGGGGAGCGGGGGGGGGAGAGGGTCCCGCGCGCT
TCGACGCGGTGTTTGCCGTGAGCAGCGGGGTCGTGAGCAGCTACGACGAC
GAGGGGCGGCTAAAGTGGCAGGATCGCCGCGGGCCCAAGTGGACCCGGAA
AGGAACGCCTTAGCAAGCCCAACTCCCGCTCATCCTCACGATCCCTGGAC
CTAGAGGTCGGAGCCGCATCCCCGGCCATCATCCCAAGAGACTCGGCGGG
GGTGGCGGCGGCGGCGGCCACGGGGCCCGCCACCGCCCGCTCGAGCTCAG
GGGCAAGAAGGGGAGCACGCTCGGGAGGGGGAGCGGGGGGGGGAGAGGGT
CCCGCGCGCTTCGACGCGGTGTTTGCCGTGAGCAGCGGGGTCGTGAGCAG
CTACGACGACGAGGGGCGGCTAAAGTGGCAGGATCGCCGCGGGCCCAAGT
GGACCCGGAAAGCAGACGCCGAAGGAGGAGACCCCGCCAACGGGGGCGGT
TACGTGGTCCCCTTCACCCTGGAGGTCGGCTGGCCTGGTCGCGGCCGGGG
AAGGATCGTCACCAACCCTTCCCCTGGCGCCGAGGAGGAGCGAATTCTGG
TGGTGGGGCAGCAGACGCCGAAGGAGGAGACCCCGCCAACGGGGGCGGTT
ACGTGGTCCCCTTCACCCTGGAGGTCGGCTGGCCTGGTCGCGGCCGGGGA
AGGATCGTCACCAACCCTTCCCCTGGCGCCGAGGAGGAGCGAATTCTGGT
GGTGGGGCAGGACAAGATGTGCGTGTACGACCGCGGGGGCCGCTTGGCCG
GATCCACCCCTCTCGCCGCCCCGCCCTCCCAGCGCCCGGTGCTCGGCGAC
TTCGACGGAGACGGCGTGGTCGACGTTCTGGTCGTGGGGTGGAGCGGGGC
GGTGGCCGGCTACGCCCTCGCTCCGGACCCGGGAGTCCGTGCGATGTTCG
TGGCGGTGTTGGCGCTCGTGGCGGCGATGCTGGTGGTCGCCGCGGTGCAC
GTTCCGCCGCCGCCTTCGTCGTCGTCGAGGGGAGGGGGGGGGGCGACGCG
GTATGGGACGGGGCTGGCTGGAGGGACGTCTAAGCGCGCGACGGACTAGG
ACAAGATGTGCGTGTACGACCGCGGGGGCCGCTTGGCCGGATCCACCCCT
CTCGCCGCCCCGCCCTCCCAGCGCCCGGTGCTCGGCGACTTCGACGGAGA
CGGCGTGGTCGACGTTCTGGTCGTGGGGTGGAGCGGGGCGGTGGCCGGCT
ACGCCCTCGCTCCGGACCCGGGAGTCCGTGCGATGTTCGTGGCGGTGTTG
GCGCTCGTGGCGGCGATGCTGGTGGTCGCCGCGGTGCACGTTCCGCCGCC
GCCTTCGTCGTCGTCGAGGGGAGGGGGGGGGGCGACGCGGTATGGGACGG
GGCTGGCTGGAGGGACGTCTAAGCGCGCGACGGACTAG
back to top