mRNA_E-siliculosus-1a_F_contig1590.3396.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 663 bits (1711), Expect = 2.110e-240 Identity = 327/343 (95.34%), Postives = 335/343 (97.67%), Query Frame = 1
Query: 1 MVMLVSAELPVALTELTAPEIHDLETLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 1029
MV+ VSAELPVALTEL PEI+DLETLPAITKDATC DWAAWIPPRS+PAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMG+RCVPMSALDLPTHE IWQLRVRVVSCLLE+G+VDVIMSDADALWLADPAKDLFSRG GGRGDIVASRGSWPN+QWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYG GIIAGLG+SNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQT VVAHCYFPQKEAGVKTSWMKKANLWSVQDDP
Sbjct: 1 MVIFVSAELPVALTELIDPEIYDLETLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 343
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 538 bits (1386), Expect = 7.670e-191 Identity = 275/346 (79.48%), Postives = 283/346 (81.79%), Query Frame = 1
Query: 151 VVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQ-----------------------------------------------------ISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 1029
+ + VVSEGYIDIERNFIRLMERNSGFTR NIYLMCMD ASKNFFD KMG+RCVPMSALDLPTH+DIWQLRV+VVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDI+ASRGSWPNEQ KEWGSTLCMGFI+FRARNVAGMKRFLDVMADLVVQNKDDQ ISVNRAAKQLGIVWDKNSDMRYEESTGYG G+IAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRV LLPHSAYTR CGRRTLSNQT VVAHCYFPQKEAGVKTSWMKKANLWSVQDDP
Sbjct: 1 MTVPVVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVILLPHSAYTRRCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 346
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 315 bits (806), Expect = 3.980e-103 Identity = 169/311 (54.34%), Postives = 205/311 (65.92%), Query Frame = 1
Query: 79 LPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLW 1011
LPAIT ATCADW WIPPRS PA+VMQVVS Y+++ERNFIRLME NS TR ++YLMCMD+ S +FF++ M +RC+P++A D P+H +IW LR RVVSCL+E G DVIMSDADALWL DP KD F+ +VASRG +P EWG+T+CMGF+LFRA + FL+VM LV +NKDDQISVN AA+ LGIVWD+ SDMRY ES +G G I L NN PF VTLLPH+AYTR+C +SN+T VVAHC+ P K A KT WM ++ LW
Sbjct: 35 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQ-DVIMSDADALWLDDPFKD-FNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQ----------------------------PFSVTLLPHNAYTRVCDETPISNKT-VVAHCWAP-KTADSKTGWMVQSKLW 313
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 246 bits (628), Expect = 6.920e-76 Identity = 142/318 (44.65%), Postives = 187/318 (58.81%), Query Frame = 1
Query: 76 TLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHE-DIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
TLP ITKD++C+D AW+PPRS PAVV QVVSE Y +E NFI ME +S F+R N+YL+C+D+ S FD +G+RCV L P D+W LRV CLL G DV+MSDADA+WL DP D F+ ++VASR P + +WG+T+CMGF FRA A M+ F+ V+ ++V + DDQ +VN A +LG+VWD SDM + ST G G+I + T +G P +VTLLPH+ YTR C R +SN T +VAHC K G+ T WMK+A+LW++ DD
Sbjct: 60 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQ-DVLMSDADAIWLRDPTND-FASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSA-MQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENI------------------TANG-----------DPLKVTLLPHNKYTRSCRRTPISNDT-IVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 342
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 242 bits (617), Expect = 2.650e-73 Identity = 142/318 (44.65%), Postives = 187/318 (58.81%), Query Frame = 1
Query: 76 TLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHE-DIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
TLP ITKD++C+D AW+PPRS PAVV QVVSE Y +E NFI ME +S F+R N+YL+C+D+ S FD +G+RCV L P DIW LR+ V CLL G DV+MSDADA+WL DP DL S ++VASR P + +WG+T+CMGF FRA A M+ F+ V+ ++ + +DQI+VN A +L +VWD SDM + ++T G G+I N T GG +VTLLPH+ YTR C R +SN T +VAHC K G+ T WMK+A+LW++ DD
Sbjct: 135 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQ-DVLMSDADAIWLRDPTDDLASDAFLDS-NVVASRAVMPFPLYHKWGATICMGFAFFRAGGSA-MQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIE------NITVDGG-----------------------SLKVTLLPHNKYTRSCRRTPISNDT-IVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 417
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 232 bits (591), Expect = 1.180e-69 Identity = 133/318 (41.82%), Postives = 195/318 (61.32%), Query Frame = 1
Query: 76 TLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLP-THEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
TL AI++ A+CAD AW+PP+ QPAVV QVVS+ Y+ +++NFI ME +S F+R N+YL+C+D+ S F +G+RCV + P + +W LR+ V CLL+ G +DV+MSDADA+WL DP D F IVASRG+ P ++ WG+T+CMGF+LFRA + A + +F++V+ + + ++DQ +VN A ++L +VWD SDM + +ST G G++ NS ++ G++ V+LLPH+ YTR C R +S +T VVAHC K G+ T WMK+A+LW+V DD
Sbjct: 118 TLLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGA-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLHDPMDD-FDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNA-IYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVV-------NS-------IYSGES----------------LTVSLLPHNKYTRSCRRTPISVET-VVAHCISTDKGEGMAT-WMKEAHLWNVPDD 399
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 190 bits (482), Expect = 2.790e-55 Identity = 132/326 (40.49%), Postives = 158/326 (48.47%), Query Frame = 1
Query: 58 EIHDLETLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFR--ARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDK-NSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
++ LE LPAI+ +A CADWAAW+PP S P VVMQV E GH DV+MSDADALWLADP KD FS G IVASRGS+P E WG+T+CMGFILFR A VA M+ F+ VM LV++ KDDQI+VN AA+ LGIVW++ +SDMRY ESTG+G G I L +N PF VTLLPHSAYTR+C +SN T VVAHC K K WM + +LW+V +D
Sbjct: 29 DLLPLEPLPAISPEAVCADWAAWVPPMSGPTVVMQV--------------------------------------------------------------------------EAGH-DVMMSDADALWLADPMKD-FSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVA-MREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQ----------------------------PFTVTLLPHSAYTRICASTPVSNTT-VVAHC-ISSKTPQSKADWMHRMDLWAVDED 247
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.020e-48 Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 1
Query: 211 MERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRAR-NVAGMKRFLDVMADLVVQNKDDQISV 657
ME + FTR ++YLMC+DD S +FF++ MG+ C+P+S L++ +HE IW LRVRVVSCL E GH DVIMSDADALWLADP KD FS G IVASRG P E K WG+T+CMGFILFRA N M +F+ VM LV +++DDQI+V
Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGH-DVIMSDADALWLADPMKD-FSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A6H5JSD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSD8_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.490e-23 Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 1
Query: 1 MVMLVSAELPVALTELTAPEIHDLETLPAITKDATCADWAAWIPPRSQPAVVMQV 165
MVM VSAELP ALTE TAPEIHDLETLPAITKDATC DWAAW+PPRSQPAVVMQV
Sbjct: 1 MVMFVSAELPEALTEYTAPEIHDLETLPAITKDATCVDWAAWVPPRSQPAVVMQV 55
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A2R5G8L5_9STRA (Beta-arabinofuranosyltransferase RAY1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8L5_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.770e-9 Identity = 57/188 (30.32%), Postives = 91/188 (48.40%), Query Frame = 1
Query: 142 QPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRC-VPMSA----------LDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKD--LFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRA 666
+P V+ VS Y N++ MER + ++C+D + + + G+ C +P A L++ +W +R+ + +L G V++SD+DA+W + L R G DIVASRG +P + + WG+TLCMG + FRA V + L+ + VQ DDQI +N A
Sbjct: 101 EPVAVLTYVSYSYKATLLNWMVAMERAKV---PGVGVVCLDQDLRAYLRER-GIPCYMPAQAPSGGGSKKGQLNVKAISKLWIMRLVHLLDVLRSGK-SVVLSDSDAIWAENAIASGILHERSG----DIVASRGQYPWDVAENWGATLCMGVVYFRA--VPSVVSMLENALEEAVQANDDQIGLNNA 277 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1590.3396.1 >prot_E-siliculosus-1a_F_contig1590.3396.1 ID=prot_E-siliculosus-1a_F_contig1590.3396.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=344bp MVMLVSAELPVALTELTAPEIHDLETLPAITKDATCADWAAWIPPRSQPAback to top mRNA from alignment at E-siliculosus-1a_F_contig1590:21185..23552+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1590.3396.1 ID=mRNA_E-siliculosus-1a_F_contig1590.3396.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2368bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1590:21185..23552+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1590:21185..23552+ >mRNA_E-siliculosus-1a_F_contig1590.3396.1 ID=mRNA_E-siliculosus-1a_F_contig1590.3396.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2064bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1590:21185..23552+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |