mRNA_E-siliculosus-1a_F_contig1590.3396.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1590.3396.1
Unique NamemRNA_E-siliculosus-1a_F_contig1590.3396.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI)

HSP 1 Score: 663 bits (1711), Expect = 2.110e-240
Identity = 327/343 (95.34%), Postives = 335/343 (97.67%), Query Frame = 1
Query:    1 MVMLVSAELPVALTELTAPEIHDLETLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 1029
            MV+ VSAELPVALTEL  PEI+DLETLPAITKDATC DWAAWIPPRS+PAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMG+RCVPMSALDLPTHE IWQLRVRVVSCLLE+G+VDVIMSDADALWLADPAKDLFSRG GGRGDIVASRGSWPN+QWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYG GIIAGLG+SNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQT VVAHCYFPQKEAGVKTSWMKKANLWSVQDDP
Sbjct:    1 MVIFVSAELPVALTELIDPEIYDLETLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 343          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE)

HSP 1 Score: 538 bits (1386), Expect = 7.670e-191
Identity = 275/346 (79.48%), Postives = 283/346 (81.79%), Query Frame = 1
Query:  151 VVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQ-----------------------------------------------------ISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 1029
            + + VVSEGYIDIERNFIRLMERNSGFTR NIYLMCMD ASKNFFD KMG+RCVPMSALDLPTH+DIWQLRV+VVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDI+ASRGSWPNEQ KEWGSTLCMGFI+FRARNVAGMKRFLDVMADLVVQNKDDQ                                                     ISVNRAAKQLGIVWDKNSDMRYEESTGYG G+IAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRV LLPHSAYTR CGRRTLSNQT VVAHCYFPQKEAGVKTSWMKKANLWSVQDDP
Sbjct:    1 MTVPVVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVILLPHSAYTRRCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 346          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 3.980e-103
Identity = 169/311 (54.34%), Postives = 205/311 (65.92%), Query Frame = 1
Query:   79 LPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLW 1011
            LPAIT  ATCADW  WIPPRS PA+VMQVVS  Y+++ERNFIRLME NS  TR ++YLMCMD+ S +FF++ M +RC+P++A D P+H +IW LR RVVSCL+E G  DVIMSDADALWL DP KD F+        +VASRG +P     EWG+T+CMGF+LFRA     +  FL+VM  LV +NKDDQISVN AA+ LGIVWD+ SDMRY ES  +G G I  L   NN                             PF VTLLPH+AYTR+C    +SN+T VVAHC+ P K A  KT WM ++ LW
Sbjct:   35 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQ-DVIMSDADALWLDDPFKD-FNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQ----------------------------PFSVTLLPHNAYTRVCDETPISNKT-VVAHCWAP-KTADSKTGWMVQSKLW 313          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 6.920e-76
Identity = 142/318 (44.65%), Postives = 187/318 (58.81%), Query Frame = 1
Query:   76 TLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHE-DIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
            TLP ITKD++C+D  AW+PPRS PAVV QVVSE Y  +E NFI  ME +S F+R N+YL+C+D+ S   FD  +G+RCV    L  P    D+W LRV    CLL  G  DV+MSDADA+WL DP  D F+       ++VASR   P   + +WG+T+CMGF  FRA   A M+ F+ V+ ++V +  DDQ +VN A  +LG+VWD  SDM +  ST  G G+I  +                  T +G            P +VTLLPH+ YTR C R  +SN T +VAHC    K  G+ T WMK+A+LW++ DD
Sbjct:   60 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQ-DVLMSDADAIWLRDPTND-FASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSA-MQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENI------------------TANG-----------DPLKVTLLPHNKYTRSCRRTPISNDT-IVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 342          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 2.650e-73
Identity = 142/318 (44.65%), Postives = 187/318 (58.81%), Query Frame = 1
Query:   76 TLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHE-DIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
            TLP ITKD++C+D  AW+PPRS PAVV QVVSE Y  +E NFI  ME +S F+R N+YL+C+D+ S   FD  +G+RCV    L  P    DIW LR+ V  CLL  G  DV+MSDADA+WL DP  DL S       ++VASR   P   + +WG+T+CMGF  FRA   A M+ F+ V+ ++  +  +DQI+VN A  +L +VWD  SDM + ++T  G G+I       N T  GG                         +VTLLPH+ YTR C R  +SN T +VAHC    K  G+ T WMK+A+LW++ DD
Sbjct:  135 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQ-DVLMSDADAIWLRDPTDDLASDAFLDS-NVVASRAVMPFPLYHKWGATICMGFAFFRAGGSA-MQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIE------NITVDGG-----------------------SLKVTLLPHNKYTRSCRRTPISNDT-IVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 417          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 1.180e-69
Identity = 133/318 (41.82%), Postives = 195/318 (61.32%), Query Frame = 1
Query:   76 TLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLP-THEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
            TL AI++ A+CAD  AW+PP+ QPAVV QVVS+ Y+ +++NFI  ME +S F+R N+YL+C+D+ S   F   +G+RCV    +  P +   +W LR+ V  CLL+ G +DV+MSDADA+WL DP  D F         IVASRG+ P   ++ WG+T+CMGF+LFRA + A + +F++V+ +   + ++DQ +VN A ++L +VWD  SDM + +ST  G G++       NS       ++ G++                  V+LLPH+ YTR C R  +S +T VVAHC    K  G+ T WMK+A+LW+V DD
Sbjct:  118 TLLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGA-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLHDPMDD-FDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNA-IYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVV-------NS-------IYSGES----------------LTVSLLPHNKYTRSCRRTPISVET-VVAHCISTDKGEGMAT-WMKEAHLWNVPDD 399          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 2.790e-55
Identity = 132/326 (40.49%), Postives = 158/326 (48.47%), Query Frame = 1
Query:   58 EIHDLETLPAITKDATCADWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFR--ARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDK-NSDMRYEESTGYGNGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
            ++  LE LPAI+ +A CADWAAW+PP S P VVMQV                                                                          E GH DV+MSDADALWLADP KD FS  G     IVASRGS+P E    WG+T+CMGFILFR  A  VA M+ F+ VM  LV++ KDDQI+VN AA+ LGIVW++ +SDMRY ESTG+G G I  L   +N                             PF VTLLPHSAYTR+C    +SN T VVAHC    K    K  WM + +LW+V +D
Sbjct:   29 DLLPLEPLPAISPEAVCADWAAWVPPMSGPTVVMQV--------------------------------------------------------------------------EAGH-DVMMSDADALWLADPMKD-FSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVA-MREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQ----------------------------PFTVTLLPHSAYTRICASTPVSNTT-VVAHC-ISSKTPQSKADWMHRMDLWAVDED 247          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.020e-48
Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 1
Query:  211 MERNSGFTRRNIYLMCMDDASKNFFDTKMGMRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRAR-NVAGMKRFLDVMADLVVQNKDDQISV 657
            ME  + FTR ++YLMC+DD S +FF++ MG+ C+P+S L++ +HE IW LRVRVVSCL E GH DVIMSDADALWLADP KD FS  G     IVASRG  P E  K WG+T+CMGFILFRA  N   M +F+ VM  LV +++DDQI+V
Sbjct:    1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGH-DVIMSDADALWLADPMKD-FSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A6H5JSD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSD8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.490e-23
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 MVMLVSAELPVALTELTAPEIHDLETLPAITKDATCADWAAWIPPRSQPAVVMQV 165
            MVM VSAELP ALTE TAPEIHDLETLPAITKDATC DWAAW+PPRSQPAVVMQV
Sbjct:    1 MVMFVSAELPEALTEYTAPEIHDLETLPAITKDATCVDWAAWVPPRSQPAVVMQV 55          
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Match: A0A2R5G8L5_9STRA (Beta-arabinofuranosyltransferase RAY1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8L5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.770e-9
Identity = 57/188 (30.32%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  142 QPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGMRC-VPMSA----------LDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKD--LFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRA 666
            +P  V+  VS  Y     N++  MER        + ++C+D   + +   + G+ C +P  A          L++     +W +R+  +  +L  G   V++SD+DA+W  +      L  R G    DIVASRG +P +  + WG+TLCMG + FRA  V  +   L+   +  VQ  DDQI +N A
Sbjct:  101 EPVAVLTYVSYSYKATLLNWMVAMERAKV---PGVGVVCLDQDLRAYLRER-GIPCYMPAQAPSGGGSKKGQLNVKAISKLWIMRLVHLLDVLRSGK-SVVLSDSDAIWAENAIASGILHERSG----DIVASRGQYPWDVAENWGATLCMGVVYFRA--VPSVVSMLENALEEAVQANDDQIGLNNA 277          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1590.3396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LK17_ECTSI2.110e-24095.34Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5JTX9_9PHAE7.670e-19179.48Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5LI82_9PHAE3.980e-10354.34Nucleotid_trans domain-containing protein n=2 Tax=... [more]
A0A6H5KMQ8_9PHAE6.920e-7644.65Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FGV6_ECTSI2.650e-7344.65Acetyltransferase (Isoleucine patch superfamily pr... [more]
D8LSV3_ECTSI1.180e-6941.82Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7G4E2_ECTSI2.790e-5540.49Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FQM0_ECTSI1.020e-4859.33Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5JSD8_9PHAE1.490e-2390.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5G8L5_9STRA1.770e-930.32Beta-arabinofuranosyltransferase RAY1 n=1 Tax=Hond... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1590contigE-siliculosus-1a_F_contig1590:21185..23552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1032
Model size1032
Exons4
Ec32 orthologEc-06_007830.1
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferase
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2C6NG@1,2SGR5@2759
EggNOG free text desc.Nucleotide-diphospho-sugar transferase
Seed eggNOG ortholog2880.D8LK17
Seed ortholog evalue1.2e-188
Seed ortholog score665.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1590.3396.1prot_E-siliculosus-1a_F_contig1590.3396.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1590 21185..23552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928104.0413835-CDS-E-siliculosus-1a_F_contig1590:21184..213461622928104.0413835-CDS-E-siliculosus-1a_F_contig1590:21184..21346Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 21185..21346 +
1696318805.7453368-CDS-E-siliculosus-1a_F_contig1590:21184..213461696318805.7453368-CDS-E-siliculosus-1a_F_contig1590:21184..21346Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 21185..21346 +
1622928104.056943-CDS-E-siliculosus-1a_F_contig1590:21704..219041622928104.056943-CDS-E-siliculosus-1a_F_contig1590:21704..21904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 21705..21904 +
1696318805.756588-CDS-E-siliculosus-1a_F_contig1590:21704..219041696318805.756588-CDS-E-siliculosus-1a_F_contig1590:21704..21904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 21705..21904 +
1622928104.0692632-CDS-E-siliculosus-1a_F_contig1590:22223..225091622928104.0692632-CDS-E-siliculosus-1a_F_contig1590:22223..22509Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 22224..22509 +
1696318805.7659998-CDS-E-siliculosus-1a_F_contig1590:22223..225091696318805.7659998-CDS-E-siliculosus-1a_F_contig1590:22223..22509Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 22224..22509 +
1622928104.0834517-CDS-E-siliculosus-1a_F_contig1590:23168..235521622928104.0834517-CDS-E-siliculosus-1a_F_contig1590:23168..23552Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 23169..23552 +
1696318805.7750955-CDS-E-siliculosus-1a_F_contig1590:23168..235521696318805.7750955-CDS-E-siliculosus-1a_F_contig1590:23168..23552Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1590 23169..23552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1590.3396.1

>prot_E-siliculosus-1a_F_contig1590.3396.1 ID=prot_E-siliculosus-1a_F_contig1590.3396.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=344bp
MVMLVSAELPVALTELTAPEIHDLETLPAITKDATCADWAAWIPPRSQPA
VVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMG
MRCVPMSALDLPTHEDIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPA
KDLFSRGGGGRGDIVASRGSWPNEQWKEWGSTLCMGFILFRARNVAGMKR
FLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGNGIIA
GLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTR
LCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP*
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mRNA from alignment at E-siliculosus-1a_F_contig1590:21185..23552+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1590.3396.1 ID=mRNA_E-siliculosus-1a_F_contig1590.3396.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2368bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1590:21185..23552+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTATGTTGGTGTCGGCCGAGCTGCCGGTAGCGTTGACCGAGCTTAC CGCTCCAGAAATCCACGACTTGGAAACACTGCCGGCGATAACGAAGGATG CCACCTGTGCGGATTGGGCAGCGTGGATACCTCCGCGATCGCAACCGGCC GTGGTGATGCAGGTAGATCACATACGCAGTATGTGCTGCTGTCGTTGTTG GATATCACCTGCCCCCCGTTCCCTTGGCAGCATTGTCTGGGCAAGCGGAA GCAATATGAAATTACCTCATCACCTGCCCTACACAGCTCCTTAGAACAAG AACGCTTGTTTCAGAGGGCACGTGTTCATCTGAGGCAACGGGTTGTTGTA GCGGGTGGCACCCAGCGCTACCAGCCAACCGTCCCTCGTATACACTGCAA ACCCCGTGCTGGTGCTACATTAGCGGTAGTGGCGGGGAGAGGGTGATGAT GACGTCAACCATATACACAGAATTTCGTTTTTGAGTTTCCTTACTCAAAA CCACGTCTGTCTGCGTGTAGGTGGTGAGCGAGGGCTATATTGATATCGAG CGGAACTTCATCCGGCTGATGGAGAGGAACTCGGGCTTCACACGCCGCAA CATCTACCTCATGTGCATGGACGATGCATCCAAGAACTTTTTCGACACGA AAATGGGGATGCGCTGCGTACCTATGAGCGCATTGGACCTGCCCACGCAT GAAGACATCTGGCAACTCAGGTATTAAAACGATGGGTAGCGTAATAAGGG TCCAGATTTGGTTTAGGCATTGGTTTGTTGTCCCTGTCTCGTTACCTGTC TGTCTCCCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTTTCTCTCTCTGCATATACCTCTCTCCCCGGCACACACAGGT TTGAATCATGTCCGCTCCTCGTTTGTCTCTTCCCTCCACACAACTGTCCT CGCTTCTTGTGCTTGTCTCTTCACTTGACGTTCATACTCCGGAACTCAAC GGCGTTCTCCCTACCTGCGAAAATTTCCCTTTTTCTAAGGGTAAGGGTGG TGTCATGCCTCCTAGAGGTGGGGCACGTGGACGTCATCATGAGCGACGCG GATGCCCTCTGGCTCGCCGACCCGGCAAAAGACCTGTTTAGCAGAGGCGG CGGTGGCAGGGGAGACATCGTAGCCTCGCGCGGCAGCTGGCCGAACGAGC AGTGGAAGGAGTGGGGCTCGACCCTCTGCATGGGGTTCATCCTGTTCCGC GCCCGGAACGTTGCGGGGATGAAGAGGTTCCTCGACGTCATGGCGGACCT CGTGGTGCAGAACAAGGACGACCAGGTGAAAAGATTTCGAACACGCTTTC GTTCGTCTGTTGTTGTCATATGGCATATGCTTCAGAACGTTGTTTCTGCG TGACCCAGAGGCGGGGTTCTTAGGCAAGAGCGGCAGGACATATGGGGTAG ACCTAAAAACTGCAAACAACGGTCGATGAGCGGACCAACCAGGACCACGT TTTGGCTGAAAAGTGTCGTCGCGTATTATAGGTCTGTCAACCAGAGCGCG ACAACTAATCCGGGGGGGGGGGGGGGGGGGGCAGGTTTTTGGTGCATTTG GTCCTTTGCTTCCCCCCCCCAGACGCTGGTGGTGTGGGGGGGGGTGGGGG GGGGGGCGCGGGNNNNNNNNNNTTGTTGGTATGTGTAGGCTGATTAGGCA GGTCGCGGCAGACGCGGGGCGGGAGGAGAGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGTCACGTTTTTCGTGCATCTGGTACGTTGCTTCTCCGTCA CAGATGCTGTGTGAGTGTGCAGCGATGCGGAGACGGTCACGGGCGTTTGA AAAAGATTTTTGTGGTTTTCCTGCAAGTTCTCGCCCGCGATCAAACCCAA CACTTACGGAAAGAGCGTTCTGCGCCACGGTGCTGCGCCCCCCCGCCCGC CTCTTTTATCTTGTCGGTTGTTTCGGTTGAGAAGATTTCGGTCAATCGAG CCGCGAAACAGCTGGGAATCGTGTGGGATAAGAACAGCGACATGAGATAC GAGGAGAGCACGGGCTACGGCAATGGGATCATCGCCGGCCTCGGCAGCAG CAACAATAGCACTAGCGGCGGTGGTGGCGATCTTTTCATTGGGCAAACCG GCCACGGCGTTGTCGTCGGCAGAGGGACACGGGAAGTAGAGGCACCGTTC AGGGTGACCTTGCTCCCCCACAGCGCGTACACGAGGCTCTGCGGTAGAAG GACGCTCTCGAACCAGACGATGGTGGTAGCTCACTGCTACTTCCCCCAAA AGGAGGCGGGCGTCAAGACTTCCTGGATGAAAAAGGCCAATCTGTGGTCG GTGCAGGACGATCCCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1590:21185..23552+

>mRNA_E-siliculosus-1a_F_contig1590.3396.1 ID=mRNA_E-siliculosus-1a_F_contig1590.3396.1|Name=mRNA_E-siliculosus-1a_F_contig1590.3396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2064bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1590:21185..23552+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTATGTTGGTGTCGGCCGAGCTGCCGGTAGCGTTGACCGAGCTTAC
CGCTCCAGAAATCCACGACTTGGAAACACTGCCGGCGATAACGAAGGATG
CCACCTGTGCGGATTGGGCAGCGTGGATACCTCCGCGATCGCAACCGGCC
GTGGTGATGCAGATGGTTATGTTGGTGTCGGCCGAGCTGCCGGTAGCGTT
GACCGAGCTTACCGCTCCAGAAATCCACGACTTGGAAACACTGCCGGCGA
TAACGAAGGATGCCACCTGTGCGGATTGGGCAGCGTGGATACCTCCGCGA
TCGCAACCGGCCGTGGTGATGCAGGTGGTGAGCGAGGGCTATATTGATAT
CGAGCGGAACTTCATCCGGCTGATGGAGAGGAACTCGGGCTTCACACGCC
GCAACATCTACCTCATGTGCATGGACGATGCATCCAAGAACTTTTTCGAC
ACGAAAATGGGGATGCGCTGCGTACCTATGAGCGCATTGGACCTGCCCAC
GCATGAAGACATCTGGCAACTCAGGTGGTGAGCGAGGGCTATATTGATAT
CGAGCGGAACTTCATCCGGCTGATGGAGAGGAACTCGGGCTTCACACGCC
GCAACATCTACCTCATGTGCATGGACGATGCATCCAAGAACTTTTTCGAC
ACGAAAATGGGGATGCGCTGCGTACCTATGAGCGCATTGGACCTGCCCAC
GCATGAAGACATCTGGCAACTCAGGGTAAGGGTGGTGTCATGCCTCCTAG
AGGTGGGGCACGTGGACGTCATCATGAGCGACGCGGATGCCCTCTGGCTC
GCCGACCCGGCAAAAGACCTGTTTAGCAGAGGCGGCGGTGGCAGGGGAGA
CATCGTAGCCTCGCGCGGCAGCTGGCCGAACGAGCAGTGGAAGGAGTGGG
GCTCGACCCTCTGCATGGGGTTCATCCTGTTCCGCGCCCGGAACGTTGCG
GGGATGAAGAGGTTCCTCGACGTCATGGCGGACCTCGTGGTGCAGAACAA
GGACGACCAGGGTAAGGGTGGTGTCATGCCTCCTAGAGGTGGGGCACGTG
GACGTCATCATGAGCGACGCGGATGCCCTCTGGCTCGCCGACCCGGCAAA
AGACCTGTTTAGCAGAGGCGGCGGTGGCAGGGGAGACATCGTAGCCTCGC
GCGGCAGCTGGCCGAACGAGCAGTGGAAGGAGTGGGGCTCGACCCTCTGC
ATGGGGTTCATCCTGTTCCGCGCCCGGAACGTTGCGGGGATGAAGAGGTT
CCTCGACGTCATGGCGGACCTCGTGGTGCAGAACAAGGACGACCAGATTT
CGGTCAATCGAGCCGCGAAACAGCTGGGAATCGTGTGGGATAAGAACAGC
GACATGAGATACGAGGAGAGCACGGGCTACGGCAATGGGATCATCGCCGG
CCTCGGCAGCAGCAACAATAGCACTAGCGGCGGTGGTGGCGATCTTTTCA
TTGGGCAAACCGGCCACGGCGTTGTCGTCGGCAGAGGGACACGGGAAGTA
GAGGCACCGTTCAGGGTGACCTTGCTCCCCCACAGCGCGTACACGAGGCT
CTGCGGTAGAAGGACGCTCTCGAACCAGACGATGGTGGTAGCTCACTGCT
ACTTCCCCCAAAAGGAGGCGGGCGTCAAGACTTCCTGGATGAAAAAGGCC
AATCTGTGGTCGGTGCAGGACGATCCCTGAATTTCGGTCAATCGAGCCGC
GAAACAGCTGGGAATCGTGTGGGATAAGAACAGCGACATGAGATACGAGG
AGAGCACGGGCTACGGCAATGGGATCATCGCCGGCCTCGGCAGCAGCAAC
AATAGCACTAGCGGCGGTGGTGGCGATCTTTTCATTGGGCAAACCGGCCA
CGGCGTTGTCGTCGGCAGAGGGACACGGGAAGTAGAGGCACCGTTCAGGG
TGACCTTGCTCCCCCACAGCGCGTACACGAGGCTCTGCGGTAGAAGGACG
CTCTCGAACCAGACGATGGTGGTAGCTCACTGCTACTTCCCCCAAAAGGA
GGCGGGCGTCAAGACTTCCTGGATGAAAAAGGCCAATCTGTGGTCGGTGC
AGGACGATCCCTGA
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