mRNA_E-siliculosus-1a_F_contig159.3394.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig159.3394.1
Unique NamemRNA_E-siliculosus-1a_F_contig159.3394.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig159.3394.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.600e-18
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = -1 
Query:   49 QARAPGGYTSTAEYLGLRALLAPAPASGSVQPAPRXXXXLVSPTTXXXXXXXPVVPSTVAA 231
            QARAPGGYTSTAEYLGLRALLAPAPASGSVQPAPRXXXXLVSPTT   XXXXPV PSTVAA
Sbjct: 3214 QARAPGGYTSTAEYLGLRALLAPAPASGSVQPAPRXXXXLVSPTTSSHXXXXPVAPSTVAA 3274
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BLAST of mRNA_E-siliculosus-1a_F_contig159.3394.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 9.220e-13
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = -1 
Query:   97 QARAPGGYTSTAEYLGLRALLAPAPASGSVQPAPRXXXXLVSPTT 231
            QARAPGGYTSTAEYLGLRALLAPAPASGSVQP  R    LVSPTT
Sbjct: 2773 QARAPGGYTSTAEYLGLRALLAPAPASGSVQPQARPSPALVSPTT 2817
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig159.3394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE2.600e-1893.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI9.220e-1386.67Similar to E1a binding protein P400 (Partial) (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig159contigE-siliculosus-1a_F_contig159:71714..72307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size240
Model size244
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928102.9616694-CDS-E-siliculosus-1a_F_contig159:71713..717481622928102.9616694-CDS-E-siliculosus-1a_F_contig159:71713..71748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 71714..71748 +
1696318805.24896-CDS-E-siliculosus-1a_F_contig159:71713..717481696318805.24896-CDS-E-siliculosus-1a_F_contig159:71713..71748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 71714..71748 +
1622928102.9763887-CDS-E-siliculosus-1a_F_contig159:72100..723051622928102.9763887-CDS-E-siliculosus-1a_F_contig159:72100..72305Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 72101..72305 +
1696318805.2563665-CDS-E-siliculosus-1a_F_contig159:72100..723051696318805.2563665-CDS-E-siliculosus-1a_F_contig159:72100..72305Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 72101..72305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig159.3394.1prot_E-siliculosus-1a_F_contig159.3394.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig159 71714..72305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig159.3394.1

>prot_E-siliculosus-1a_F_contig159.3394.1 ID=prot_E-siliculosus-1a_F_contig159.3394.1|Name=mRNA_E-siliculosus-1a_F_contig159.3394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=80bp
DWLEQDPGLLLLGSGSGGDGRRHHRCRGRVGSGGGANERRRRSGRGLDGA
RGRRRRQEGAKAEVLRGRRVAPRRPRLRGG
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mRNA from alignment at E-siliculosus-1a_F_contig159:71714..72307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig159.3394.1 ID=mRNA_E-siliculosus-1a_F_contig159.3394.1|Name=mRNA_E-siliculosus-1a_F_contig159.3394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=594bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig159:71714..72307+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACTGGCTGGAGCAGGATCCTGGCCTGCTGCTGCTGCTGCTGCTGCTGCT
GCCGCTGCCACATTTGGAGAACGTGGCAAGGAATCGGCCGCCCCCCGGTC
CGTCGCGGCCACCGCAATCCCTGAAGCCTCCTCGCCGCCGCCAGCCGCAA
CCGCCACTGCTGCTGCCGGGACGGCTACGGCGGGGTACGAGGCGGGCGCG
ACTTCGGTGCTCCCTCCGGCGGCTGTCGCTCTGCGATCAGCAGAGCGCCA
CTGCTCTCCTCCCGATGCTCCCGCGGGAGCGGGCGGAGAAGAGGCCGGCA
AAGAAGAGGCACCGGAGCTACCCGCTGCCGAACCCGTCGGCCTGCCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCGGCAGC
GGCGGCGACGGTAGAAGGCACCACCGGTGTCGGGGACGGGTGGGAAGCGG
TGGTGGGGCTAACGAGCGCCGGCGACGGTCGGGGCGCGGGCTGGACGGAG
CCAGAGGCCGGCGCCGGCGCCAGGAGGGCGCGAAGGCCGAGGTACTCCGC
GGTCGACGTGTAGCCCCCCGGCGCCCGCGCCTGCGCGGCGGCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig159:71714..72307+

>mRNA_E-siliculosus-1a_F_contig159.3394.1 ID=mRNA_E-siliculosus-1a_F_contig159.3394.1|Name=mRNA_E-siliculosus-1a_F_contig159.3394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig159:71714..72307+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACTGGCTGGAGCAGGATCCTGGCCTGCTGCTGCTGACTGGCTGGAGCAG
GATCCTGGCCTGCTGCTGCTCGGCAGCGGCAGCGGCGGCGACGGTAGAAG
GCACCACCGGTGTCGGGGACGGGTGGGAAGCGGTGGTGGGGCTAACGAGC
GCCGGCGACGGTCGGGGCGCGGGCTGGACGGAGCCAGAGGCCGGCGCCGG
CGCCAGGAGGGCGCGAAGGCCGAGGTACTCCGCGGTCGACGTGTAGCCCC
CCGGCGCCCGCGCCTGCGCGGCGGCCGGCAGCGGCAGCGGCGGCGACGGT
AGAAGGCACCACCGGTGTCGGGGACGGGTGGGAAGCGGTGGTGGGGCTAA
CGAGCGCCGGCGACGGTCGGGGCGCGGGCTGGACGGAGCCAGAGGCCGGC
GCCGGCGCCAGGAGGGCGCGAAGGCCGAGGTACTCCGCGGTCGACGTGTA
GCCCCCCGGCGCCCGCGCCTGCGCGGCGGC
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