mRNA_E-siliculosus-1a_F_contig159.3393.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig159.3393.1
Unique NamemRNA_E-siliculosus-1a_F_contig159.3393.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig159.3393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig159contigE-siliculosus-1a_F_contig159:70868..72053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size621
Model size621
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928102.891593-CDS-E-siliculosus-1a_F_contig159:70867..711791622928102.891593-CDS-E-siliculosus-1a_F_contig159:70867..71179Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 70868..71179 -
1696318805.2308545-CDS-E-siliculosus-1a_F_contig159:70867..711791696318805.2308545-CDS-E-siliculosus-1a_F_contig159:70867..71179Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 70868..71179 -
1622928102.9058602-CDS-E-siliculosus-1a_F_contig159:71744..720531622928102.9058602-CDS-E-siliculosus-1a_F_contig159:71744..72053Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 71745..72053 -
1696318805.2411098-CDS-E-siliculosus-1a_F_contig159:71744..720531696318805.2411098-CDS-E-siliculosus-1a_F_contig159:71744..72053Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 71745..72053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig159.3393.1prot_E-siliculosus-1a_F_contig159.3393.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig159 70868..72053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig159.3393.1

>prot_E-siliculosus-1a_F_contig159.3393.1 ID=prot_E-siliculosus-1a_F_contig159.3393.1|Name=mRNA_E-siliculosus-1a_F_contig159.3393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=207bp
PTGSAAGSSGASSLPASSPPAPAGASGGEQWRSADRRATAAGGSTEVAPA
SYPAVAVPAAAVAVAAGGGEEASGIAVAATDRGAADSLPRSPNVAAAAAA
AAAPTPQQQWAAVLHLPPSALSTPAPPLPPAAPAAAPVPEDVPPPPPPRP
QRADSQPQPPTQQQQTTQQSWWVQQHQQQLQLQLQRHMIYQQSLQQHALA
QQQQQQA
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mRNA from alignment at E-siliculosus-1a_F_contig159:70868..72053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig159.3393.1 ID=mRNA_E-siliculosus-1a_F_contig159.3393.1|Name=mRNA_E-siliculosus-1a_F_contig159.3393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1186bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig159:70868..72053- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGACGGGTTCGGCAGCGGGTAGCTCCGGTGCCTCTTCTTTGCCGGCCTC
TTCTCCGCCCGCTCCCGCGGGAGCATCGGGAGGAGAGCAGTGGCGCTCTG
CTGATCGCAGAGCGACAGCCGCCGGAGGGAGCACCGAAGTCGCGCCCGCC
TCGTACCCCGCCGTAGCCGTCCCGGCAGCAGCAGTGGCGGTTGCGGCTGG
CGGCGGCGAGGAGGCTTCAGGGATTGCGGTGGCCGCGACGGACCGGGGGG
CGGCCGATTCCTTGCCACGTTCTCCAAATGTGGCAGCGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGGCCAGGATCCTGCTCCAGCCAGTCAGGTATGTAC
GCCTGGGTTGGTGCGCTTGCTTGTTGGGAGGGGCGTGTGGTTTTGGCGGA
TCTTCCACCAACCCCCGCCACTGCCGAAAGTTCTTGTATTATAGTGGCTT
GCGCTGTGTGCGTGCCTTTCGAGGCTACTGGTAAATTGTTTTGCAGTCGC
GATCGTGCGCGATTGTATCCATGTTGGATCGTCCTGTTGCTGTCAAGCGG
AACGTAGGCGCTCCCCAGCGAAGCCAAAGTTGTTGGTGTGGTGCGCCATC
GCCCCTTATCTGTTGGAAGAGCCGGTTGGTGCTCGCTCGAACCGTTTTGT
TTCTCTTCTCATTCGCCCTCCACCCCAGGACCCTCAGTTGCTGCCTGACC
CCGACGGGAAGCGTGCCTGACGCGGAAATATATGCCGGCATGGTAAGTTT
TTTTTTCGTTCGCTTGCCCTTCGCAAACACACGCTCCTCATTCCCCTTCA
ACCGCCCACTCTTTTTTGTGTTTTGGCCGTCCCGCTGTCTTTGGTTCTCT
CGTGACGCGAACCAACCGAAACAGCCGACGCCGCAGCAGCAGTGGGCGGC
CGTGTTGCATCTACCCCCGTCGGCGCTATCTACACCTGCACCCCCGCTGC
CGCCGGCGGCGCCGGCAGCGGCGCCTGTTCCGGAAGACGTTCCTCCTCCG
CCACCCCCCCGCCCTCAGCGGGCCGATTCCCAACCACAGCCACCTACCCA
GCAGCAGCAGACGACCCAGCAAAGCTGGTGGGTCCAGCAGCACCAGCAAC
AGCTCCAGCTCCAGCTGCAGCGGCACATGATCTACCAGCAAAGCCTGCAG
CAGCACGCTCTGGCCCAGCAGCAGCAGCAACAAGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig159:70868..72053-

>mRNA_E-siliculosus-1a_F_contig159.3393.1 ID=mRNA_E-siliculosus-1a_F_contig159.3393.1|Name=mRNA_E-siliculosus-1a_F_contig159.3393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig159:70868..72053- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGACGGGTTCGGCAGCGGGTAGCTCCGGTGCCTCTTCTTTGCCGGCCTC
TTCTCCGCCCGCTCCCGCGGGAGCATCGGGAGGAGAGCAGTGGCGCTCTG
CTGATCGCAGAGCGACAGCCGCCGGAGGGAGCACCGAAGTCGCGCCCGCC
TCGTACCCCGCCGTAGCCGTCCCGGCAGCAGCAGTGGCGGTTGCGGCTGG
CGGCGGCGAGGAGGCTTCAGGGATTGCGGTGGCCGCGACGGACCGGGGGG
CGGCCGATTCCTTGCCACGTTCTCCAAATGTGGCAGCGGCAGCAGCAGCA
GCAGCAGCACCGACGGGTTCGGCAGCGGGTAGCTCCGGTGCCTCTTCTTT
GCCGGCCTCTTCTCCGCCCGCTCCCGCGGGAGCATCGGGAGGAGAGCAGT
GGCGCTCTGCTGATCGCAGAGCGACAGCCGCCGGAGGGAGCACCGAAGTC
GCGCCCGCCTCGTACCCCGCCGTAGCCGTCCCGGCAGCAGCAGTGGCGGT
TGCGGCTGGCGGCGGCGAGGAGGCTTCAGGGATTGCGGTGGCCGCGACGG
ACCGGGGGGCGGCCGATTCCTTGCCACGTTCTCCAAATGTGGCAGCGGCA
GCAGCAGCAGCAGCAGCACCGACGCCGCAGCAGCAGTGGGCGGCCGTGTT
GCATCTACCCCCGTCGGCGCTATCTACACCTGCACCCCCGCTGCCGCCGG
CGGCGCCGGCAGCGGCGCCTGTTCCGGAAGACGTTCCTCCTCCGCCACCC
CCCCGCCCTCAGCGGGCCGATTCCCAACCACAGCCACCTACCCAGCAGCA
GCAGACGACCCAGCAAAGCTGGTGGGTCCAGCAGCACCAGCAACAGCTCC
AGCTCCAGCTGCAGCGGCACATGATCTACCAGCAAAGCCTGCAGCAGCAC
GCTCTGGCCCAGCAGCAGCAGCAACAAGCTCCGACGCCGCAGCAGCAGTG
GGCGGCCGTGTTGCATCTACCCCCGTCGGCGCTATCTACACCTGCACCCC
CGCTGCCGCCGGCGGCGCCGGCAGCGGCGCCTGTTCCGGAAGACGTTCCT
CCTCCGCCACCCCCCCGCCCTCAGCGGGCCGATTCCCAACCACAGCCACC
TACCCAGCAGCAGCAGACGACCCAGCAAAGCTGGTGGGTCCAGCAGCACC
AGCAACAGCTCCAGCTCCAGCTGCAGCGGCACATGATCTACCAGCAAAGC
CTGCAGCAGCACGCTCTGGCCCAGCAGCAGCAGCAACAAGCT
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