mRNA_E-siliculosus-1a_F_contig159.3392.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig159.3392.1 vs. uniprot
Match: D7FTP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP2_ECTSI) HSP 1 Score: 782 bits (2020), Expect = 1.130e-275 Identity = 417/464 (89.87%), Postives = 425/464 (91.59%), Query Frame = 1
Query: 28 MAPWAELNPGEGRFEELGNSLLESSSEEGDGQEDEXXXXXXXEESTEIAALRRRRAYIIAQLHNVGQSIRETEAEVLAGKCVPEISKRDLAPQDTVDESKTGSFLHAVNWSAGTDDGPGPKPLTDRAMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGGAVSFDGCLTQSGFVGHRRMVEPDHPLEVDLMTMGLDLLPESLRRWLRAKNAFDRIDAEGVSAATERGERGAKSRGEYDGSVDRGEAQLLLADAGEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRLAHTQALSRSAVNDAQRIYRTAWLSWFMSGRAKEERETSWLEKSLIRLKTRLYRGFRACHSLVGRPRRVLEELVQQGLIS---------------------SNLLAPFKGSDVRATLRAAIGDAEDDGSGFSVSLNFLHKGN 1356
MAPWAELNPGEGRF++LGNSLLESS XXXXXXX IAALRRRRAYIIAQLHNVGQSIRETEAEVLAGKCVPEISKRDLAPQDTVDESKTGSFLHAVNWSAGTDDGPGPKPLTDRAMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGGAVSFDGCLTQSGFVGHRRMVE DHPLEVDL+TMGLDLLPESL+RWLR KNAFDRIDAEGVSAATERGERGAKSRG+YDGSVDRGEAQLLLADAGEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRLAHTQALSRSAVNDAQRIYRTAWLSWFMSGRAKEERETSWLEK+LIRLKTRLYRGFRAC+SLVGRPRRVLEELVQQGLIS +NLLAPFKGSD RATLRAAIGDAEDDGSGFSVSLNFLHKGN
Sbjct: 1 MAPWAELNPGEGRFDQLGNSLLESSXXXXXXXXXXXXXXXXXXXXXXIAALRRRRAYIIAQLHNVGQSIRETEAEVLAGKCVPEISKRDLAPQDTVDESKTGSFLHAVNWSAGTDDGPGPKPLTDRAMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGGAVSFDGCLTQSGFVGHRRMVEADHPLEVDLLTMGLDLLPESLQRWLRVKNAFDRIDAEGVSAATERGERGAKSRGDYDGSVDRGEAQLLLADAGEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRLAHTQALSRSAVNDAQRIYRTAWLSWFMSGRAKEERETSWLEKNLIRLKTRLYRGFRACYSLVGRPRRVLEELVQQGLISCTSLILNPTGRFDDVTLYGVAANLLAPFKGSDARATLRAAIGDAEDDGSGFSVSLNFLHKGN 464
BLAST of mRNA_E-siliculosus-1a_F_contig159.3392.1 vs. uniprot
Match: D7FTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP1_ECTSI) HSP 1 Score: 417 bits (1071), Expect = 2.290e-135 Identity = 274/360 (76.11%), Postives = 281/360 (78.06%), Query Frame = 1
Query: 1711 QILESRTLVLNDRLKVSISVEGCFCGPLVSKLLEETVASMIDSVQQAVADSAEHDFGRVEREARTQKNAPGMRHPLVVPKRRVARSVREGRGGGLPGGGSGGVGQKQSASSGGTSAAKAAIITPTRGRLLTEREKRFRDTKTSKWLDRMWAFAAKLRGAKAFALDLEASSPLEFLESSWARAYLPASWRSQEAFTTPGFAAGWFTSWKSSFLAQASALGGRAREHLQRMRARQEAAVEXXXXXXXXXXXXXXXXXXXXXXXLGVSKALLAEAMEEKEEETVRRLREAKDKQMEEYAELEDALLTCTKYLLGPRELRIQSGPNVLVAEFQGLDILDALSAARHQGGEEDDGGSTSSGSTDS 2790
+ILESRTLVL+DRLKVSIS EGCFCGPLVSKLLEET+ASMID+V+QAVADSAEHD GRVEREARTQKNAPGMRHPLVVPKRRVA SVREGRG GLPGGGSGGVGQK+S SSGGTSA AAIITPTRGRLLTER KRF+DTKTSKWLDRMWAFAAKLRGAKAFALDLEASSPLEFLESSWARA XXXXXXXXXXXXXXXXXXXXXXX VSKALLAEAM EKEEETVRRLREAKDKQMEEYAELEDALL CTKYLLGPRELRIQSG NVLVAEFQGLDILDALSAARH GGE GSTDS
Sbjct: 4 EILESRTLVLDDRLKVSISAEGCFCGPLVSKLLEETLASMIDNVRQAVADSAEHDVGRVEREARTQKNAPGMRHPLVVPKRRVAGSVREGRGAGLPGGGSGGVGQKKSESSGGTSAEMAAIITPTRGRLLTERGKRFQDTKTSKWLDRMWAFAAKLRGAKAFALDLEASSPLEFLESSWARAXXXXX-----------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKALLAEAMGEKEEETVRRLREAKDKQMEEYAELEDALLACTKYLLGPRELRIQSGHNVLVAEFQGLDILDALSAARHPGGEXXXXXXXXXGSTDS 316
BLAST of mRNA_E-siliculosus-1a_F_contig159.3392.1 vs. uniprot
Match: A0A6U1BVW4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BVW4_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.140e-14 Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 1
Query: 379 PGPKPLTDRAMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGGAVSFDGCLTQSGFVGHRRMVEPDHPLEVDLMTMGLDLLPESLRRWLRAKNAFDRIDAEGVSAATERGERGAKSRGEYDGSVDRGEAQLLLADAGEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRL 996
P + T R D+ L F G +++ +FR YL L R + + + E W SY+ D G A G LT F+ +R +E +PLE DL+++GL LLP++L W + + AFDR+ EG++ E ++ EY + R E QL D GE+MS + E LT +M E++ RK +RL
Sbjct: 70 PRTETFTVRGADKVHELYERF-CSVPGRMTYFDFRGYLHALRR-LDEFDPHIIDSEEAWRSYMTDMFGTDEA----------GGLTPGQFLAYREWIESQYPLEADLLSIGLPLLPDTLIAWKQCEAAFDRLADEGITE--EEKFMLLRAGEEYISNFPRCEFQLFAYDNGEIMSDMECERLLTTHQDRLAVMCELLGRHRKASRL 261 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig159.3392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig159.3392.1 >prot_E-siliculosus-1a_F_contig159.3392.1 ID=prot_E-siliculosus-1a_F_contig159.3392.1|Name=mRNA_E-siliculosus-1a_F_contig159.3392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=932bp MNSSIPPTSMAPWAELNPGEGRFEELGNSLLESSSEEGDGQEDEEGRGATback to top mRNA from alignment at E-siliculosus-1a_F_contig159:54133..68636+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig159.3392.1 ID=mRNA_E-siliculosus-1a_F_contig159.3392.1|Name=mRNA_E-siliculosus-1a_F_contig159.3392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=14504bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig159:54133..68636+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig159:54133..68636+ >mRNA_E-siliculosus-1a_F_contig159.3392.1 ID=mRNA_E-siliculosus-1a_F_contig159.3392.1|Name=mRNA_E-siliculosus-1a_F_contig159.3392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5592bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig159:54133..68636+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |