mRNA_E-siliculosus-1a_F_contig1589.3384.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1589.3384.1 vs. uniprot
Match: D7FWS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS0_ECTSI) HSP 1 Score: 1090 bits (2818), Expect = 0.000e+0 Identity = 579/791 (73.20%), Postives = 651/791 (82.30%), Query Frame = 1
Query: 1 MASATTESTSEGEVVTFGPTEFVYACNNESLAAGKRNHMKNPNAFDPVIAKSFADSVYSCGAMSETTFMILSPAKNKWGTCTTWLEHTREALKHLPDGAGVSGEMESRIATLLEDKRRKPTWNETIKATLWNYDAHGLPTNEGFHNARPEFVSVQGQHRAAVLNAAFANDLGLSLSRGGDLNGGLFTDDDGATKLRTLKENLQNMKISVNVYDFLTHDQAEEAGRRQRTAEQTTTDVTFLDVARSQGDLVRQVFNTKQRICRQRTKEAFGEDWLVAMETKSRKAEQKKIRRGLVTRVNSAMQAQLGLTIQGKPSFAVFVYALALDPERPSLQLLVQYLNDQNAKVVKAKAAKVKSLVRASKLSAGQGSADDGDNASCTGYTPHSITVTALGAFFSLTPYSQDTQTVKDLLMEKGLTEGFRKDCYAHFVVLEVVRAMVKGLVTRINCVDDPHPFKESDTVIPVPTETSELFSILKTFVSEEEGAAVAAAGGAFISSMYQEVDFWVPHLVRFLLKGKGKNGRFISGDFKVTKCALAMSSNRRTSAFRNNTSDEKVNPSNKSNLTPAWGTKPFMSTSGTEPDFTQRTWQEWFTFKARTNT-EFEDSYIHRMVATVFGLLIADRCLVGLSSGQQLEGRRAKFPHLLGAIPAVGDGQKIKAFLKDQKAVAAYLQVEDQSFFAEDRLVLLFGGDQALGGESVKPSAERKSSDYTPSSDSDNSESTRDVDGPARKRGSKEPEEQFEVSIIRDCGDNDASEVSVFWPESVVSQLSMLDEKGELKCSDGIFRFNIEKKAT 2370
MASAT E TS GE+VTF PTEFVY CNNESLA GKRNHMKNPNAFDP IA+SFADSV SCGAMSETTFMILSPA WGT TWL T +AL HLP+ + EMESRI+ L++ K + TW+ETIKATLW+Y A+G PTN F+ ARPEFV+VQGQHRAAVLNAAFA DLGLSLSRGGDL GGLFTDDD ATK+ TLK L+ MKISVNVY FLTHDQAEE GRRQRT E+TTTDVTFLDVA+SQGDLVRQVFN ++ICR+R KEAFG W M+ ++ EQK IRR LV RV+ AM+ QLGL QGK SFAV+VYALALDPERPSL+LL +Y NDQNAKVVKAKAAKVKS+VRASK SAG+GS + D+AS T YTPHSITVTA+GAFFSLT YSQDTQ V+DLLMEKGLTE FR CY HFVVLEVVRAMV GLVTR NC+DDPHP+K+++TVIPVP ETSELFS+LKTFVSEEEGAAVA AG AFISSM+QEVDFWVPHLVRF L+ KNG F+SG F V K AL MS NRRT+AF ++ S E VNPSNKSNLTP WG +PFMSTSGTEPD+T RTW +WFTF+ R + E + Y++RMVATVFGLLI DR LVGLSSG L RR KF LLGAIPAVG G K+KA LK+QKAV AYLQV+DQSFFAEDRL LLFG +QA GG+SVK SAER+SSD S+DS + DVD A KRGSKEP+E+F VSI+RD G+NDASEVSV WP+SVVSQL++LD+ GELKCSDGIFRFNIEK+AT
Sbjct: 1 MASATMEPTSGGELVTFKPTEFVYTCNNESLAEGKRNHMKNPNAFDPAIARSFADSVVSCGAMSETTFMILSPASKTWGTTETWLSETMKALGHLPETSDERREMESRISALIQAKGPEATWDETIKATLWDYAAYGPPTNIEFNAARPEFVAVQGQHRAAVLNAAFATDLGLSLSRGGDLQGGLFTDDDCATKMPTLKGQLEKMKISVNVYSFLTHDQAEEVGRRQRTVEKTTTDVTFLDVAKSQGDLVRQVFNPNKKICRERAKEAFGPKWRHIMKNGGKRGEQKVIRRDLVNRVHEAMRKQLGLENQGKSSFAVYVYALALDPERPSLRLLRRYFNDQNAKVVKAKAAKVKSVVRASKHSAGEGSGHE-DHASGTDYTPHSITVTAMGAFFSLTSYSQDTQLVQDLLMEKGLTEDFRTQCYRHFVVLEVVRAMVTGLVTRRNCLDDPHPYKDNETVIPVPAETSELFSLLKTFVSEEEGAAVAIAGKAFISSMHQEVDFWVPHLVRFSLEETDKNGPFMSGTFNVPKSALTMSLNRRTTAFTHDLSTENVNPSNKSNLTPGWGVEPFMSTSGTEPDYTPRTWDDWFTFQIRGDRGELDPKYMYRMVATVFGLLIVDRKLVGLSSGHMLAERRGKFRDLLGAIPAVGAGAKLKALLKNQKAVKAYLQVDDQSFFAEDRLALLFGDNQATGGKSVKASAERESSDEGSSADSXS-----DVDDSAPKRGSKEPQEKFAVSIVRDSGNNDASEVSVRWPKSVVSQLNLLDDDGELKCSDGIFRFNIEKEAT 785
BLAST of mRNA_E-siliculosus-1a_F_contig1589.3384.1 vs. uniprot
Match: D7G2U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U1_ECTSI) HSP 1 Score: 603 bits (1556), Expect = 4.310e-195 Identity = 363/770 (47.14%), Postives = 474/770 (61.56%), Query Frame = 1
Query: 184 AMSETTFMILSPAKNKWGTCTTWLEHTREALKHLPDGAGVSGEMESRIATLLEDKRRKPTWNETIKATLWNYDAHGLPTNEGFHNARPEFVSVQGQHRAAVLNAAFANDLGLSLSRGGDLNGGLFTDDDGATKLRTLKENLQNMKISVNVYDFLTHDQAEEAGRRQRTAEQTTTDVTFLDVARSQGDLVRQVFNTKQRICRQRTKEAFGEDWLVAMETKSRKAEQKKIRRGLVTRVNSAMQAQLGLTIQGKPSFAVFVYALALDPERPSLQLLVQYLNDQNAKVVKAKAAKVKSLVRASKLSAGQGSADDGDNASCTGYTPHSITVTALGAFFSLTPYSQDTQTVKDLLMEKGLTEGFRKDCYAHFVVLEVVRAMVKGLVTRINCVDDPHPFKESDTVIPVPTETSELFSILKTFVSEEEGAAVAAA---------------------------GGAFISSMYQEVDFWVPHLVRFLLKGKGKNGRFISGDFKVTKCALAMSSNRRTSAFRNNTSDEKVNPSNKSNLTPAWGTKPFMSTSGTEPDFTQRTWQEWFTFKARTNT-EFEDSYIHRMVATVFGLLIADRCLVGLSSGQQLEGRRAKFPHLLGAIPAVGDGQKIKAFLKDQKAVAAYLQVEDQSFFAEDRLVLLFGGDQALGGESVKPSAERKSSDYTPSSDSDNSESTRDVDGPARKRGSKEPEEQFEVSIIRDCGDNDASEVSVFWPESVVSQLSMLDEKGELKCSDGIFRFNIEKKATRETAKRRKQSVSA 2409
AMSETTFM+L PA +W T TWL T EALKH + + +ME RI LLE + KP+W +TI+ NY+ G P N+ F+ RP+FVSVQGQHRAA+LN AFA+DLGLSLSRGGDL+GGLFTD + K+ TLKE L+++ ISVNV+DFLTHD AE GRRQRT E TTTDV+FLDV+ SQG LV+Q+FN + IC+ R EAFG+DW ++ +++ + + I++ LV R+ +AM+ QLGL Q + F+VFV+ AL PERPS+++L +Y DQNAKV+KAKAAKVK + K S G D+ D+AS T YTPH I+VTA+GA FSLT YSQ + V+D+L + GL+E FR C+ H VLEVVRAMV GL++R +C DP P+ +P E L+++L TFVSEEE A + FI S+YQEVD WVP LVRF LK K K ++G+FK K AL S RR +AF+++ + NPSN +NL P WG KP MSTSG+EPD+T RTW +WFT+K ++ ++H +ATVFGLLI DR L L S L KF L+ AIP VG+ +K L+ K V LQV ++SFF E+RL LL A+R+SS+ DSD E+ F V++I D D+ S S+ W +V QL +L + GEL CS+G+ RF I K ATR+ +K+RK S SA
Sbjct: 7 AMSETTFMVLCPASREWATTKTWLGGTLEALKHFEETSQERLDMEGRITNLLE-RSTKPSWGDTIE----NYNRFGPPANDQFNKTRPQFVSVQGQHRAALLNYAFASDLGLSLSRGGDLDGGLFTDAERPAKMSTLKERLRDINISVNVHDFLTHDDAETVGRRQRTVEATTTDVSFLDVSTSQGLLVKQLFNPEDDICQDRVMEAFGDDWRSTLKNPNKRKDAENIKKSLVDRIKTAMKLQLGLNSQRRGIFSVFVHTWALQPERPSIEILRRYFEDQNAKVIKAKAAKVKLVAGKGKHSTRAGR-DEPDDASATEYTPHGISVTAMGALFSLTAYSQASTLVQDMLYKGGLSEDFRIACFHHCTVLEVVRAMVTGLLSRRHCSPDPTPYDTGKGPPTIPAELRCLYNLLHTFVSEEEAQAFSEECXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFIHSIYQEVDLWVPPLVRFALKLKDKP--VLTGEFKANKLALTASLFRRVNAFQSSNAGG-TNPSNNNNLPPGWGKKPHMSTSGSEPDYTTRTWDDWFTYKPHEKDGQYCARFLHNTMATVFGLLIVDRILGALRSKHNLPSN--KFRELVRAIPEVGEIATLKGLLQKPKTVKRGLQVGEESFFDEERLALL---------------AQRESSNDGSGDDSD-----------------IRLEKPFAVTVIDDEEDDKLS--SMRWTTEIVQQLGLLGDDGELTCSEGVLRFTIAKDATRDLSKKRKASTSA 731
BLAST of mRNA_E-siliculosus-1a_F_contig1589.3384.1 vs. uniprot
Match: D7G3S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S3_ECTSI) HSP 1 Score: 199 bits (507), Expect = 1.200e-48 Identity = 170/563 (30.20%), Postives = 264/563 (46.89%), Query Frame = 1
Query: 118 KNPNAFDPVIAKSFADSVYSCGAMS-ETTFMILSPAKNKWGTCTTWLEHTREALKHLPDGAGVSGEMESRIATLLEDKRRKPTWNETIKATLWNYDAHGLPTNEGFHNARPEFVSVQGQHRAAVLNAAFANDLGLSLSRGGDLNG-GLFTDDDGATKLRTLKENLQNM----KISVNVYDFLTHDQAEEAGRRQRTAEQTTTDVTFLDVARSQGDLVRQVFNTKQRICRQRTKEAFGEDWLVAMETKSRKAEQ-KKIRRGLVTRVNSAMQAQLGLTIQGKPSFAVFVYALALDPERPSLQLLVQYLNDQNAKVVKAKAAKVKSLVRASKLSAGQGSADDGDNASCTGYTPHSITVTALGAFFSLTPYSQDTQTVKDLLMEKGLTEGFRKDCYAHFVVLEVVRAMVKGLVTRINCVDDPHPFKESDTVIPVPTETSELFS-ILKTFVSEEEGAAVAAAGGAFISSMYQEVDFWVPHLVRFLLKGKGKNGRFISGDFKVTKCALAMSSNRRTSAFRN-----NTSDEKVNPSNKSNLTP-AWGTKPFMSTSGTEPDFTQRTWQEW 1764
+ P + V+ K A + +S TT + L+P + WGT WL+ ALK DG G + ++ RI T+ + K +W+ +KA+ W+ + HG +E F + RP V+ QGQHR AVLNAA LGLSLSRGGDL G+F + A + L++ L+ +S ++ ++TH+ A + R AE TT + +DVA++ L++QV++ +Q+IC R + FG+ W + T+ R AE + ++ L V A+ T Q S VF YA+ P +++ LV YL Q +KA A + S+ S QG + T H + AL FFSLT +Q + V+ + G E FR E++ AMV L+TR + P +E + P + +L + ++ VS+EE G V P L R+ S + K+ + L S RR+ A+ + T E +NPSN + L + KPF+S SG++ F+ TW +W
Sbjct: 9 ERPRTGEAVVLKHIAREIEDRNGLSTSTTAVALTPPREDWGTPEGWLDAVENALKKTKDGEGKA-DISRRIETV-RSSQSKISWDAALKASTWDIE-HGQVEHE-FEDHRPHMVTTQGQHRFAVLNAALHEQLGLSLSRGGDLGEEGVFHGEKDAARREALEDKLKTAVKGCTVSFAIHSYMTHEAARKIAHDLRQAESRTTKESLVDVAKTMAPLIKQVYDPEQKICHDRAAKTFGDTWNFNL-TEPRFAEAGNRTKQTLAKTVKDALDLININTRQQATSLFVFAYAMC--PANETVKWLVNYLEQQGT--IKADANRGTSVP-----SPPQGIPE--------ARTVHPLKEFALQGFFSLTARTQTSPDVQSYIENNGFCEHFRTKYAIQLATCEIIDAMVMSLLTRQHL-----PRREQSSTKAHPAQDVQLLANVMTDLVSKEETTYFGKCGEGTRGEFRSAVKRLTPVLARYF-----GLPALDSSNNKINRTKLKKSVARRSKAYNDAFTSGQTLSEDMNPSNTTILVVNGYANKPFLSISGSQAIFSDETWNDW 539 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1589.3384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1589.3384.1 >prot_E-siliculosus-1a_F_contig1589.3384.1 ID=prot_E-siliculosus-1a_F_contig1589.3384.1|Name=mRNA_E-siliculosus-1a_F_contig1589.3384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1085bp MASATTESTSEGEVVTFGPTEFVYACNNESLAAGKRNHMKNPNAFDPVIAback to top mRNA from alignment at E-siliculosus-1a_F_contig1589:1405..9355+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1589.3384.1 ID=mRNA_E-siliculosus-1a_F_contig1589.3384.1|Name=mRNA_E-siliculosus-1a_F_contig1589.3384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7951bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1589:1405..9355+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1589:1405..9355+ >mRNA_E-siliculosus-1a_F_contig1589.3384.1 ID=mRNA_E-siliculosus-1a_F_contig1589.3384.1|Name=mRNA_E-siliculosus-1a_F_contig1589.3384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1589:1405..9355+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |