mRNA_E-siliculosus-1a_F_contig1588.3378.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1588.3378.1
Unique NamemRNA_E-siliculosus-1a_F_contig1588.3378.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1588.3378.1 vs. uniprot
Match: D8LFW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW6_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 9.930e-138
Identity = 237/261 (90.80%), Postives = 239/261 (91.57%), Query Frame = 1 
Query:    1 MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGRTFWYNGVTHEATLEDPSKDGSYASPSSLSLPSQLQQRQSVSPVAVTPFRSGCRTPGDGCVTPAECGRVTPPFYGCTAPPAAADYPISGYAXXXXXXXXXXXXMTPPHVRGYFSPGTGGVSPPYGHRRDQXXXXXXXXXXLPDQNAYPVENQSPCFAAGQAWEALPRQPRRARXXXXSDASVPXXXXXXXXXXXXXXGYRWDECYKETDGKKFWRHKETGVIITEDPYH 783
            MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGR FWYNGVTHEATLEDPSKDGSYASPSSLSLPSQLQQRQS SPVAVTPFRSGCRTPGDGCVTPAECGRVTPPFYGCTAPPAA DYPISGYAXXXXXXXXXXXX            GTGGVSPPYGHRRDQXXXXXXXX  LPDQNAYPVENQSPCFAAGQAWE++P QPRRAR  XX DASV XXXXXXXXXXXXXXGYRWDECYKETDGKKFWRHKETGVIITEDPYH
Sbjct:    1 MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGRAFWYNGVTHEATLEDPSKDGSYASPSSLSLPSQLQQRQSASPVAVTPFRSGCRTPGDGCVTPAECGRVTPPFYGCTAPPAAEDYPISGYAXXXXXXXXXXXXXXXXXXXXXXXXGTGGVSPPYGHRRDQXXXXXXXX--LPDQNAYPVENQSPCFAAGQAWESVPHQPRRARRQXXXDASVXXXXXXXXXXXXXXXGYRWDECYKETDGKKFWRHKETGVIITEDPYH 259
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BLAST of mRNA_E-siliculosus-1a_F_contig1588.3378.1 vs. uniprot
Match: A0A6H5JRE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE1_9PHAE)

HSP 1 Score: 389 bits (1000), Expect = 6.490e-135
Identity = 213/261 (81.61%), Postives = 220/261 (84.29%), Query Frame = 1 
Query:    1 MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGRTFWYNGVTHEATLEDPSKDGSYASPSSLSLPSQLQQRQSVSPVAVTPFRSGCRTPGDGCVTPAECGRVTPPFYGCTAPPAAADYPISGYAXXXXXXXXXXXXMTPPHVRGYFSPGTGGVSPPYGHRRDQXXXXXXXXXXLPDQNAYPVENQSPCFAAGQAWEALPRQPRRARXXXXSDASVPXXXXXXXXXXXXXXGYRWDECYKETDGKKFWRHKETGVIITEDPYH 783
            MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGR+FWYNGVTHEATLEDPSK+GSYA PSSLSLPSQL QRQS SPVAVTPFRSGCRT  D CVTPAECGRVTPPFYGCTAPPA  D PISGYA XXXXXXXXXX MTPPHVRGYFSPGTGGVSPP G+R DQ           P Q+AYPV+NQS CFAAGQAWE LPRQPRRARXXXXS++SVP              GYRWDECYKETDGKKFWRHKETGVIITEDPYH
Sbjct:    1 MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGRSFWYNGVTHEATLEDPSKNGSYAPPSSLSLPSQLLQRQSASPVAVTPFRSGCRTQADACVTPAECGRVTPPFYGCTAPPAD-DRPISGYASXXXXXXXXXXVMTPPHVRGYFSPGTGGVSPPCGYRCDQQLPPP------PHQHAYPVQNQSSCFAAGQAWETLPRQPRRARXXXXSNSSVPPSAATAGGDGSGSGGYRWDECYKETDGKKFWRHKETGVIITEDPYH 254
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1588.3378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFW6_ECTSI9.930e-13890.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRE1_9PHAE6.490e-13581.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1588contigE-siliculosus-1a_F_contig1588:12990..14094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size786
Model size786
Exons2
Ec32 orthologEc-05_005260.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928101.4547565-CDS-E-siliculosus-1a_F_contig1588:12989..130961622928101.4547565-CDS-E-siliculosus-1a_F_contig1588:12989..13096Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1588 12990..13096 +
1696318804.7457304-CDS-E-siliculosus-1a_F_contig1588:12989..130961696318804.7457304-CDS-E-siliculosus-1a_F_contig1588:12989..13096Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1588 12990..13096 +
1622928101.4711971-CDS-E-siliculosus-1a_F_contig1588:13415..140941622928101.4711971-CDS-E-siliculosus-1a_F_contig1588:13415..14094Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1588 13416..14094 +
1696318804.7545688-CDS-E-siliculosus-1a_F_contig1588:13415..140941696318804.7545688-CDS-E-siliculosus-1a_F_contig1588:13415..14094Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1588 13416..14094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1588.3378.1prot_E-siliculosus-1a_F_contig1588.3378.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1588 12990..14094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1588.3378.1

>prot_E-siliculosus-1a_F_contig1588.3378.1 ID=prot_E-siliculosus-1a_F_contig1588.3378.1|Name=mRNA_E-siliculosus-1a_F_contig1588.3378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=262bp
MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGRTFWYNGVTHEATLEDPS
KDGSYASPSSLSLPSQLQQRQSVSPVAVTPFRSGCRTPGDGCVTPAECGR
VTPPFYGCTAPPAAADYPISGYASPPYNGYVSPPVMTPPHVRGYFSPGTG
GVSPPYGHRRDQQQQQPPPPPPLPDQNAYPVENQSPCFAAGQAWEALPRQ
PRRARRQRRSDASVPPSAATAGGGGSGGGGYRWDECYKETDGKKFWRHKE
TGVIITEDPYH*
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mRNA from alignment at E-siliculosus-1a_F_contig1588:12990..14094+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1588.3378.1 ID=mRNA_E-siliculosus-1a_F_contig1588.3378.1|Name=mRNA_E-siliculosus-1a_F_contig1588.3378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1105bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1588:12990..14094+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGGCCTATGCGGCGAAAGCTGTGCTGGGAGAGAAGCGCTTCGAGGC
GTCGGAAGCGGCCGTTGAATGGACCGGTGCCCGTGACGGTAGTGGTCGTA
CGTTCTGGTGGGTACACGTAGACTGTATGCTGCTGAACATAAGTTGTGCA
TCGTCGAATCGTCTCTGCTGGGCTGCATCTGCGTATTTGAGATACAGTCG
ACGGCTACCCGCCAAGCCGCCGGTTTTTGCACTTTGTCGCAGCAAGTCAC
ACACCCTCTCTCGCTCGTCATCCCGGCCGCTGCTCTACGCAGTACCCACA
GCAGTGTTTCCGCCGTATCCCAAGCTGATCATCTTGTTCGCAGACCACCA
CAATGTGTTCGAACTTCACGAGAAACAACTCCCGACGCCTAAAACCGTCC
TGTTCGTTTCTTTCCGGCGAAAACAGGTACAACGGGGTAACACACGAAGC
CACGCTGGAAGACCCGAGCAAGGACGGGAGCTATGCTTCGCCGTCGTCGT
TGTCGTTGCCGTCGCAGCTGCAGCAGCGGCAATCCGTGTCGCCCGTGGCG
GTGACGCCGTTCCGGAGCGGGTGCAGGACCCCGGGCGACGGGTGCGTGAC
GCCGGCGGAATGCGGCCGCGTGACGCCCCCGTTCTACGGCTGCACGGCGC
CGCCGGCCGCCGCCGACTACCCCATCAGCGGCTACGCGTCGCCGCCCTAC
AACGGCTACGTGTCGCCCCCGGTCATGACGCCGCCCCACGTGCGCGGGTA
CTTCTCTCCCGGCACCGGCGGCGTGTCACCGCCGTACGGGCACCGGCGCG
ACCAGCAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCTGCCGGATCAGAAC
GCCTACCCGGTGGAGAACCAGTCCCCGTGCTTCGCCGCGGGGCAAGCGTG
GGAAGCACTGCCACGCCAGCCGCGTCGCGCTCGGCGGCAGAGGCGGAGTG
ACGCCTCCGTTCCGCCATCCGCGGCTACTGCCGGCGGCGGTGGCAGCGGC
GGCGGCGGCTACCGGTGGGACGAGTGCTACAAGGAAACCGATGGGAAAAA
GTTCTGGCGCCACAAAGAGACGGGCGTTATCATCACAGAAGACCCCTACC
ACTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1588:12990..14094+

>mRNA_E-siliculosus-1a_F_contig1588.3378.1 ID=mRNA_E-siliculosus-1a_F_contig1588.3378.1|Name=mRNA_E-siliculosus-1a_F_contig1588.3378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1588:12990..14094+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGGCCTATGCGGCGAAAGCTGTGCTGGGAGAGAAGCGCTTCGAGGC
GTCGGAAGCGGCCGTTGAATGGACCGGTGCCCGTGACGGTAGTGGTCGTA
CGTTCTGATGCTGGCCTATGCGGCGAAAGCTGTGCTGGGAGAGAAGCGCT
TCGAGGCGTCGGAAGCGGCCGTTGAATGGACCGGTGCCCGTGACGGTAGT
GGTCGTACGTTCTGGTACAACGGGGTAACACACGAAGCCACGCTGGAAGA
CCCGAGCAAGGACGGGAGCTATGCTTCGCCGTCGTCGTTGTCGTTGCCGT
CGCAGCTGCAGCAGCGGCAATCCGTGTCGCCCGTGGCGGTGACGCCGTTC
CGGAGCGGGTGCAGGACCCCGGGCGACGGGTGCGTGACGCCGGCGGAATG
CGGCCGCGTGACGCCCCCGTTCTACGGCTGCACGGCGCCGCCGGCCGCCG
CCGACTACCCCATCAGCGGCTACGCGTCGCCGCCCTACAACGGCTACGTG
TCGCCCCCGGTCATGACGCCGCCCCACGTGCGCGGGTACTTCTCTCCCGG
CACCGGCGGCGTGTCACCGCCGTACGGGCACCGGCGCGACCAGCAGCAGC
AGCAGCCGCCGCCGCCGCCGCCGCTGCCGGATCAGAACGCCTACCCGGTG
GAGAACCAGTCCCCGTGCTTCGCCGCGGGGCAAGCGTGGGAAGCACTGCC
ACGCCAGCCGCGTCGCGCTCGGCGGCAGAGGCGGAGTGACGCCTCCGTTC
CGCCATCCGCGGCTACTGCCGGCGGCGGTGGCAGCGGCGGCGGCGGCTAC
CGGTGGGACGAGTGCTACAAGGAAACCGATGGGAAAAAGTTCTGGCGCCA
CAAAGAGACGGGCGTTATCATCACAGAAGACCCCTACCACTAAGTACAAC
GGGGTAACACACGAAGCCACGCTGGAAGACCCGAGCAAGGACGGGAGCTA
TGCTTCGCCGTCGTCGTTGTCGTTGCCGTCGCAGCTGCAGCAGCGGCAAT
CCGTGTCGCCCGTGGCGGTGACGCCGTTCCGGAGCGGGTGCAGGACCCCG
GGCGACGGGTGCGTGACGCCGGCGGAATGCGGCCGCGTGACGCCCCCGTT
CTACGGCTGCACGGCGCCGCCGGCCGCCGCCGACTACCCCATCAGCGGCT
ACGCGTCGCCGCCCTACAACGGCTACGTGTCGCCCCCGGTCATGACGCCG
CCCCACGTGCGCGGGTACTTCTCTCCCGGCACCGGCGGCGTGTCACCGCC
GTACGGGCACCGGCGCGACCAGCAGCAGCAGCAGCCGCCGCCGCCGCCGC
CGCTGCCGGATCAGAACGCCTACCCGGTGGAGAACCAGTCCCCGTGCTTC
GCCGCGGGGCAAGCGTGGGAAGCACTGCCACGCCAGCCGCGTCGCGCTCG
GCGGCAGAGGCGGAGTGACGCCTCCGTTCCGCCATCCGCGGCTACTGCCG
GCGGCGGTGGCAGCGGCGGCGGCGGCTACCGGTGGGACGAGTGCTACAAG
GAAACCGATGGGAAAAAGTTCTGGCGCCACAAAGAGACGGGCGTTATCAT
CACAGAAGACCCCTACCACTAA
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