mRNA_E-siliculosus-1a_F_contig15853.3371.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15853.3371.1
Unique NamemRNA_E-siliculosus-1a_F_contig15853.3371.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 5.790e-134
Identity = 196/201 (97.51%), Postives = 197/201 (98.01%), Query Frame = 1
Query:    1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSDTAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSSERA 603
            VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVK PTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARS TAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDS + A
Sbjct:  278 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSHQSA 478          
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 6.120e-37
Identity = 88/179 (49.16%), Postives = 101/179 (56.42%), Query Frame = 1
Query:    1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVV-VDNIYAVYADANFSLPAQPHVNFGALLQR---------------SARSDTAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRA 489
            V P L+ITDIPCMLAPIA++ HP LL+  G LPR+A+G VSL  LQH+GA A +FPD HSVK+P   F S   SSA     V N+YAVYA A      Q  ++F  LL                  A  D     D SS  KR   LAEN L SLH QG YA+ LFEVV VFS W   A
Sbjct:   15 VQPCLVITDIPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFTSATASSALGAQPVHNVYAVYAAAEPPPGVQAQLDFRTLLGHHSDMVEKDRQLRAAPDAEGDVTGASDWSSSPKRISELAENTLASLHNQGWYAIDLFEVVLVFSLWFQAA 193          
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5JV99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV99_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.310e-36
Identity = 84/172 (48.84%), Postives = 98/172 (56.98%), Query Frame = 1
Query:    1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVV-VDNIYAVYADANFSLPAQPHVNFGALLQR---------------SARSDTAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVF 468
            V P L+ITDIPC+LAPIA++ HP LL+  G LPR A+G VSL  LQH+GA A +FPD HSVK+P   FPS   SSA     V N+YAVYA A      Q  ++F  LL                  A  D     D SS  KR   LAEN L SLH QG YA+ LFEVV V+
Sbjct:   15 VQPCLVITDIPCVLAPIADKNHPDLLDEGGALPRSAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALGAQPVHNVYAVYAAAEPPPGVQAQLDFRTLLGHHSDMVEKDRQLRAAPDAEGDVTGASDWSSSPKRISELAENTLASLHNQGWYAIDLFEVVLVW 186          
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.130e-35
Identity = 96/236 (40.68%), Postives = 125/236 (52.97%), Query Frame = 1
Query:    7 PSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTE--SFPSPPPSSAT---DVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSDTAE-------VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKAD----DGGAIPGLVPPDEGGTNDTSSDHEMDDSSERAMDDLSLSELCSISQFFEKVLR 666
            PS+++TDIPCM+AP AE+  P LL+N G LPR+A G VSLP LQH+GA  +++PD H V++P    +F S   SS     D +  N+Y  +A A  S P QPH++F ALL+ +   D  E         D SS  KR   LAE  L  LHQQGCYA+ LFEVV  ++ W   A  A        GG   G  PP                  E A+ DLS +EL  I+    ++LR
Sbjct:  163 PSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATA-LSGPVQPHIDFSALLKHAG--DVVERNRQVQGTDDWSSSPKRISELAETSLRYLHQQGCYALNLFEVVLAYALWFQEASVADPHVHLLQGGRESGGDPP------------------ESAITDLSRAELGMIAAHLMEILR 377          
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.900e-35
Identity = 98/235 (41.70%), Postives = 128/235 (54.47%), Query Frame = 1
Query:    1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSP-------PPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARS-DTAE-VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEG----GTNDTSSDHEMDDSSERAMDDLSLSELCSISQFFEKVLR 666
            V P L+ITDIPC + PIAERL P LL++ G LPRDA+G V L  LQH+GAHA+EFPDEH VK+P   FP+        P                  A  +   QPHV+F +LL+R+A + D A  V D SS   R   LAE+ L  LH++G YAMTL+EVV ++  W      A  +  G  PG V   EG    G ++T    E+ +        LS SEL +I+ + + VLR
Sbjct:   59 VQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPTAAFTLGASPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRRAADAQDRARTVADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLLYYLWFQATGWATPE--GEAPGAVAGAEGEGGRGGDNTPPLREISE--------LSRSELATITSYLKGVLR 283          
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5KLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN2_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.260e-24
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVV-VDNIYAVYADANFSLPAQPHVNFGALL 321
            V P L+ITD PCMLAPIA++ HP LL+  G LPR+A+G VSL  LQH+GA A +FPD HSVK+P   FPS   SSA     V N+YAVYA A  S   Q  ++F  LL
Sbjct:   15 VQPCLVITDTPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALGAQPVHNVYAVYAAAEPSPGVQAQLDFRTLL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LKH0_ECTSI5.790e-13497.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKI4_9PHAE6.120e-3749.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV99_9PHAE6.310e-3648.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W4_9PHAE2.130e-3540.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3W5_9PHAE4.900e-3541.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLN2_9PHAE2.260e-2455.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15853contigE-siliculosus-1a_F_contig15853:227..892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size651
Model size667
Exons1
Ec32 orthologEc-16_002930.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928100.0694637-CDS-E-siliculosus-1a_F_contig15853:226..8771622928100.0694637-CDS-E-siliculosus-1a_F_contig15853:226..877Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15853 227..877 -
1696318804.0528624-CDS-E-siliculosus-1a_F_contig15853:226..8771696318804.0528624-CDS-E-siliculosus-1a_F_contig15853:226..877Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15853 227..877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928100.0821867-UTR-E-siliculosus-1a_F_contig15853:877..8921622928100.0821867-UTR-E-siliculosus-1a_F_contig15853:877..892Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15853 878..892 -
1696318804.0609124-UTR-E-siliculosus-1a_F_contig15853:877..8921696318804.0609124-UTR-E-siliculosus-1a_F_contig15853:877..892Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15853 878..892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15853.3371.1prot_E-siliculosus-1a_F_contig15853.3371.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15853 227..877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15853.3371.1

>prot_E-siliculosus-1a_F_contig15853.3371.1 ID=prot_E-siliculosus-1a_F_contig15853.3371.1|Name=mRNA_E-siliculosus-1a_F_contig15853.3371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=217bp
MITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEF
PDEHSVKLPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGA
LLQRSARSDTAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAV
FSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSSERAMDDL
SLSELCSISQFFEKVLR
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mRNA from alignment at E-siliculosus-1a_F_contig15853:227..892-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15853.3371.1 ID=mRNA_E-siliculosus-1a_F_contig15853.3371.1|Name=mRNA_E-siliculosus-1a_F_contig15853.3371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15853:227..892- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTACCACCAAGCCTGATGATCACAGATATTCCATGCATGCTGGCGCCGAT CGCGGAAAGACTACACCCCTGGCTACTGGAAAATGAAGGCCGACTGCCTC GGGATGCCGACGGCGTTGTGTCCTTGCCGGCACTGCAGCACCTCGGTGCC CATGCGCACGAGTTTCCCGATGAGCACAGCGTGAAGTTGCCAACGGAGTC GTTCCCATCTCCTCCTCCATCATCGGCAACGGACGTGGTTGTTGACAACA TCTACGCGGTCTACGCCGACGCGAATTTTTCCCTTCCCGCCCAACCGCAT GTCAACTTCGGCGCCCTCCTTCAACGTTCAGCGAGGAGTGACACTGCTGA GGTTGGTGACACTTCGTCTTTATCCAAGCGCTTCTGCACCCTGGCCGAGA ACCAGCTCATCTCTCTTCACCAGCAAGGGTGCTACGCCATGACTCTCTTC GAGGTTGTGGCTGTGTTCTCAGCTTGGCTTCATCGTGCAGTCAACGCGAA GGCGGACGACGGAGGGGCGATCCCAGGCCTCGTCCCACCGGATGAGGGGG GAACGAACGATACTTCTTCAGACCACGAGATGGACGACTCATCAGAGCGC GCGATGGATGACTTGTCGCTGTCCGAGCTCTGCTCAATCTCCCAATTCTT CGAGAAAGTTCTCCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15853:227..892-

>mRNA_E-siliculosus-1a_F_contig15853.3371.1 ID=mRNA_E-siliculosus-1a_F_contig15853.3371.1|Name=mRNA_E-siliculosus-1a_F_contig15853.3371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1302bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15853:227..892- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCACAGATATTCCATGCATGCTGGCGCCGATCGCGGAAAGACTACA
CCCCTGGCTACTGGAAAATGAAGGCCGACTGCCTCGGGATGCCGACGGCG
TTGTGTCCTTGCCGGCACTGCAGCACCTCGGTGCCCATGCGCACGAGTTT
CCCGATGAGCACAGCGTGAAGTTGCCAACGGAGTCGTTCCCATCTCCTCC
TCCATCATCGGCAACGGACGTGGTTGTTGACAACATCTACGCGGTCTACG
CCGACGCGAATTTTTCCCTTCCCGCCCAACCGCATGTCAACTTCGGCGCC
CTCCTTCAACGTTCAGCGAGGAGTGACACTGCTGAGGTTGGTGACACTTC
GTCTTTATCCAAGCGCTTCTGCACCCTGGCCGAGAACCAGCTCATCTCTC
TTCACCAGCAAGGGTGCTACGCCATGACTCTCTTCGAGGTTGTGGCTGTG
TTCTCAGCTTGGCTTCATCGTGCAGTCAACGCGAAGGCGGACGACGGAGG
GGCGATCCCAGGCCTCGTCCCACCGGATGAGGGGGGAACGAACGATACTT
CTTCAGACCACGAGATGGACGACTCATCAGAGCGCGCGATGGATGACTTG
TCGCTGTCCGAGCTCTGCTCAATCTCCCAATTCTTCGAGAAAGTTCTCCG
AATGATCACAGATATTCCATGCATGCTGGCGCCGATCGCGGAAAGACTAC
ACCCCTGGCTACTGGAAAATGAAGGCCGACTGCCTCGGGATGCCGACGGC
GTTGTGTCCTTGCCGGCACTGCAGCACCTCGGTGCCCATGCGCACGAGTT
TCCCGATGAGCACAGCGTGAAGTTGCCAACGGAGTCGTTCCCATCTCCTC
CTCCATCATCGGCAACGGACGTGGTTGTTGACAACATCTACGCGGTCTAC
GCCGACGCGAATTTTTCCCTTCCCGCCCAACCGCATGTCAACTTCGGCGC
CCTCCTTCAACGTTCAGCGAGGAGTGACACTGCTGAGGTTGGTGACACTT
CGTCTTTATCCAAGCGCTTCTGCACCCTGGCCGAGAACCAGCTCATCTCT
CTTCACCAGCAAGGGTGCTACGCCATGACTCTCTTCGAGGTTGTGGCTGT
GTTCTCAGCTTGGCTTCATCGTGCAGTCAACGCGAAGGCGGACGACGGAG
GGGCGATCCCAGGCCTCGTCCCACCGGATGAGGGGGGAACGAACGATACT
TCTTCAGACCACGAGATGGACGACTCATCAGAGCGCGCGATGGATGACTT
GTCGCTGTCCGAGCTCTGCTCAATCTCCCAATTCTTCGAGAAAGTTCTCC
GA
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