mRNA_E-siliculosus-1a_F_contig15853.3371.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI) HSP 1 Score: 394 bits (1013), Expect = 5.790e-134 Identity = 196/201 (97.51%), Postives = 197/201 (98.01%), Query Frame = 1
Query: 1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSDTAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSSERA 603
VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVK PTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARS TAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDS + A
Sbjct: 278 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSHQSA 478
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.120e-37 Identity = 88/179 (49.16%), Postives = 101/179 (56.42%), Query Frame = 1
Query: 1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVV-VDNIYAVYADANFSLPAQPHVNFGALLQR---------------SARSDTAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRA 489
V P L+ITDIPCMLAPIA++ HP LL+ G LPR+A+G VSL LQH+GA A +FPD HSVK+P F S SSA V N+YAVYA A Q ++F LL A D D SS KR LAEN L SLH QG YA+ LFEVV VFS W A
Sbjct: 15 VQPCLVITDIPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFTSATASSALGAQPVHNVYAVYAAAEPPPGVQAQLDFRTLLGHHSDMVEKDRQLRAAPDAEGDVTGASDWSSSPKRISELAENTLASLHNQGWYAIDLFEVVLVFSLWFQAA 193
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5JV99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV99_9PHAE) HSP 1 Score: 139 bits (349), Expect = 6.310e-36 Identity = 84/172 (48.84%), Postives = 98/172 (56.98%), Query Frame = 1
Query: 1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVV-VDNIYAVYADANFSLPAQPHVNFGALLQR---------------SARSDTAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVF 468
V P L+ITDIPC+LAPIA++ HP LL+ G LPR A+G VSL LQH+GA A +FPD HSVK+P FPS SSA V N+YAVYA A Q ++F LL A D D SS KR LAEN L SLH QG YA+ LFEVV V+
Sbjct: 15 VQPCLVITDIPCVLAPIADKNHPDLLDEGGALPRSAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALGAQPVHNVYAVYAAAEPPPGVQAQLDFRTLLGHHSDMVEKDRQLRAAPDAEGDVTGASDWSSSPKRISELAENTLASLHNQGWYAIDLFEVVLVW 186
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 141 bits (356), Expect = 2.130e-35 Identity = 96/236 (40.68%), Postives = 125/236 (52.97%), Query Frame = 1
Query: 7 PSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTE--SFPSPPPSSAT---DVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSDTAE-------VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKAD----DGGAIPGLVPPDEGGTNDTSSDHEMDDSSERAMDDLSLSELCSISQFFEKVLR 666
PS+++TDIPCM+AP AE+ P LL+N G LPR+A G VSLP LQH+GA +++PD H V++P +F S SS D + N+Y +A A S P QPH++F ALL+ + D E D SS KR LAE L LHQQGCYA+ LFEVV ++ W A A GG G PP E A+ DLS +EL I+ ++LR
Sbjct: 163 PSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATA-LSGPVQPHIDFSALLKHAG--DVVERNRQVQGTDDWSSSPKRISELAETSLRYLHQQGCYALNLFEVVLAYALWFQEASVADPHVHLLQGGRESGGDPP------------------ESAITDLSRAELGMIAAHLMEILR 377
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 140 bits (352), Expect = 4.900e-35 Identity = 98/235 (41.70%), Postives = 128/235 (54.47%), Query Frame = 1
Query: 1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSP-------PPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARS-DTAE-VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEG----GTNDTSSDHEMDDSSERAMDDLSLSELCSISQFFEKVLR 666
V P L+ITDIPC + PIAERL P LL++ G LPRDA+G V L LQH+GAHA+EFPDEH VK+P FP+ P A + QPHV+F +LL+R+A + D A V D SS R LAE+ L LH++G YAMTL+EVV ++ W A + G PG V EG G ++T E+ + LS SEL +I+ + + VLR
Sbjct: 59 VQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPTAAFTLGASPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRRAADAQDRARTVADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLLYYLWFQATGWATPE--GEAPGAVAGAEGEGGRGGDNTPPLREISE--------LSRSELATITSYLKGVLR 283
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Match: A0A6H5KLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN2_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.260e-24 Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 1
Query: 1 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVV-VDNIYAVYADANFSLPAQPHVNFGALL 321
V P L+ITD PCMLAPIA++ HP LL+ G LPR+A+G VSL LQH+GA A +FPD HSVK+P FPS SSA V N+YAVYA A S Q ++F LL
Sbjct: 15 VQPCLVITDTPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALGAQPVHNVYAVYAAAEPSPGVQAQLDFRTLL 122 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15853.3371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig15853.3371.1 >prot_E-siliculosus-1a_F_contig15853.3371.1 ID=prot_E-siliculosus-1a_F_contig15853.3371.1|Name=mRNA_E-siliculosus-1a_F_contig15853.3371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=217bp MITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFback to top mRNA from alignment at E-siliculosus-1a_F_contig15853:227..892- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig15853.3371.1 ID=mRNA_E-siliculosus-1a_F_contig15853.3371.1|Name=mRNA_E-siliculosus-1a_F_contig15853.3371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15853:227..892- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15853:227..892- >mRNA_E-siliculosus-1a_F_contig15853.3371.1 ID=mRNA_E-siliculosus-1a_F_contig15853.3371.1|Name=mRNA_E-siliculosus-1a_F_contig15853.3371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1302bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15853:227..892- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |