mRNA_E-siliculosus-1a_F_contig1585.3368.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1585.3368.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE) HSP 1 Score: 388 bits (997), Expect = 8.110e-126 Identity = 269/305 (88.20%), Postives = 275/305 (90.16%), Query Frame = 2
Query: 47 MVGRRRIPVRLVFGFLFLTRKEECVGFVANLAAQQQHPQQQHRSCSWGQEGHXXXXXXXXXXXXXXXXXXXXXXXXAARRAIASRTALHATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGDGEPFPRLEDARKAEEPRGIGTLFESEDEVIRELSSEEYTDLLRDWAPIASFASVEAIDAKVKEEAACILTVLRGMAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVDWLAKGIHALCGKRLDLPVTISPKARGE 961
MV RRRIPVRLVFGFL LTRKE CVGFVANLAAQQ HPQQ XXXXXXXXXXXXXXXXXXX AA RAIASRTAL+ATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DG GEPFPRLEDA+K EEPRGIGTLFESEDE+IRELSSEEYT+LLRDWAPIASFASVEAID KVKEEAACILTVLRGMAEWQPKRN+DYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAV+WLAKGIHALCGKRLDLPVTISPKARGE
Sbjct: 1 MVRRRRIPVRLVFGFLLLTRKEGCVGFVANLAAQQ-HPQQXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXTATRTAAHRAIASRTALYATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----DGDAGEPFPRLEDAKKVEEPRGIGTLFESEDELIRELSSEEYTNLLRDWAPIASFASVEAIDTKVKEEAACILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGE 299
BLAST of mRNA_E-siliculosus-1a_F_contig1585.3368.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI) HSP 1 Score: 199 bits (505), Expect = 1.780e-56 Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 2
Query: 680 MAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVDWLAKGIHALCGKRLDLPVTISPKARGEG 964
MAEWQPKRNSDYTK+GSKWSFGAPIGAIKGGQVDALACL+VSEDDGVVVEWICGNPVTLGIPGNAV+WLAKGIHALCGKRLDLPVTISPKARGEG
Sbjct: 1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQVDALACLEVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGEG 95
BLAST of mRNA_E-siliculosus-1a_F_contig1585.3368.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC) HSP 1 Score: 152 bits (384), Expect = 3.200e-38 Identity = 74/150 (49.33%), Postives = 102/150 (68.00%), Query Frame = 2
Query: 506 RGIGTLFESEDEVIRELSSEEYTDLLRDWAPIASFASVEAIDAKVKEEAACILTVLRGMAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVDWLAKGIHALCGKRLDLPVTISPKAR 955
+ +GTLF+SEDE IREL S+E+ D +R WAP+++F E +A +EE VL+ MAEW+P R+ Y W FGAP+GA KGGQ+DA+ACL++SE DGVVV +I NP+ +G+ GNA DWL KG+ +C +RL + + I P R
Sbjct: 67 QALGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFVVNEG-NASSREEGNATRLVLQQMAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQLDAVACLEISESDGVVVRYIVLNPLNIGVEGNAADWLIKGMAFICRERLGMRLDIYPLMR 215
BLAST of mRNA_E-siliculosus-1a_F_contig1585.3368.1 vs. uniprot
Match: A0A835Z8Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z3_9STRA) HSP 1 Score: 118 bits (295), Expect = 8.110e-28 Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 2
Query: 680 MAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVDWLAKGIHALCGKRLDLPVTISPKARGE 961
M +W P R D+ + GS W+F AP+ A K G +DA+ACL+V+E+DG+ + W+C NP LG+PGN++ WL KGI L GKRLD+ V P ARGE
Sbjct: 1 MQKWAPARKGDFRQEGSGWAFAAPVAAFKAGNLDAVACLEVTEEDGITIAWLCENPSYLGVPGNSIAWLVKGIETLVGKRLDMAVQELPTARGE 94 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1585.3368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1585.3368.1 >prot_E-siliculosus-1a_F_contig1585.3368.1 ID=prot_E-siliculosus-1a_F_contig1585.3368.1|Name=mRNA_E-siliculosus-1a_F_contig1585.3368.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=352bp MVGRRRIPVRLVFGFLFLTRKEECVGFVANLAAQQQHPQQQHRSCSWGQEback to top mRNA from alignment at E-siliculosus-1a_F_contig1585:2049..5826+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1585.3368.1 ID=mRNA_E-siliculosus-1a_F_contig1585.3368.1|Name=mRNA_E-siliculosus-1a_F_contig1585.3368.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3778bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1585:2049..5826+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1585:2049..5826+ >mRNA_E-siliculosus-1a_F_contig1585.3368.1 ID=mRNA_E-siliculosus-1a_F_contig1585.3368.1|Name=mRNA_E-siliculosus-1a_F_contig1585.3368.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2112bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1585:2049..5826+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |