mRNA_E-siliculosus-1a_F_contig1585.3367.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1585.3367.1
Unique NamemRNA_E-siliculosus-1a_F_contig1585.3367.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1585.3367.1 vs. uniprot
Match: D7FI59_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI59_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 3.370e-5
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 3 
Query:  141 MRLSETAATAALCLAGAGNVAGFQS 215
            MRLSETAATAALCLAGAGNVAGFQS
Sbjct:    1 MRLSETAATAALCLAGAGNVAGFQS 25
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1585.3367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI59_ECTSI3.370e-5100.00Methyltransf_11 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1585contigE-siliculosus-1a_F_contig1585:199..1906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size216
Model size218
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928099.6170018-CDS-E-siliculosus-1a_F_contig1585:200..3221622928099.6170018-CDS-E-siliculosus-1a_F_contig1585:200..322Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1585 201..322 -
1696318803.6795216-CDS-E-siliculosus-1a_F_contig1585:200..3221696318803.6795216-CDS-E-siliculosus-1a_F_contig1585:200..322Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1585 201..322 -
1622928099.630048-CDS-E-siliculosus-1a_F_contig1585:1812..19061622928099.630048-CDS-E-siliculosus-1a_F_contig1585:1812..1906Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1585 1813..1906 -
1696318803.6993222-CDS-E-siliculosus-1a_F_contig1585:1812..19061696318803.6993222-CDS-E-siliculosus-1a_F_contig1585:1812..1906Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1585 1813..1906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1585.3367.1prot_E-siliculosus-1a_F_contig1585.3367.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1585 201..1906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1585.3367.1

>prot_E-siliculosus-1a_F_contig1585.3367.1 ID=prot_E-siliculosus-1a_F_contig1585.3367.1|Name=mRNA_E-siliculosus-1a_F_contig1585.3367.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp
GKLTHTRRETAIRIGSTQLKGKRAPRKTLGGVCTNRETTHITEDTQQCVC
RRQRRRRRCAWRGPATSRVFSH
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mRNA from alignment at E-siliculosus-1a_F_contig1585:199..1906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1585.3367.1 ID=mRNA_E-siliculosus-1a_F_contig1585.3367.1|Name=mRNA_E-siliculosus-1a_F_contig1585.3367.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1585:199..1906- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAAAGCTCACACATACACGACGAGAGACGGCCATTCGCATCGGTTCCAC
ACAGCTGAAGGGAAAAAGAGCTCCTAGAAAGACTCTCGGTGGAGGTGGGT
CACGTCGTCGCGGTCTGATTACGGTTGCTTTCGGGCGGTATGTGTGGAAT
GCATTTTCCAGAAACATGAGGCCTGTGTCTCCGGGGAGAGAGCGAAGTAA
CCTGAACGGGCAACACACTGAGATGCTCGGTGTATGCGAGAGGGCACACG
AGGCTTGCCCCCCACGCGTACCAAATCATGACGATTGTCGAGCTGCTGTG
GCAGGAAGAGCGCCTGAGACGGGATGGAATGCGTCCTGTTAGAAAGCAAA
AATGCTAGCCGATTTGCATGAAACTACCGCTCGCTGTCCTCTGCAACCGA
AACGAGAGGATACAGAAGCACAGCAGCAGTGCAGCAGTAGACGCGGCGCA
GCAGCAGCATAAACCTAGTGCCTGTTCTCTGTTCGAAGTTCGCGAGGCCA
CCTTCGTCGACCGCATTCCTTCTCCGTTTCCTTCTCGCTGCCGCGTTCAT
AACCTTCGCTGCGTTGCTAACTAACTCCTGTTGTAGCAAATTATCAACAA
ATTGTGTGCTGGAACTTGAAGAATGTGTGCGGCCTACGAAACAAGACTCC
CTCTGCTGTTGGCTTTTCGCCTCCAAAGCAATCCAAAGACGCAGCCGTCG
GCGCGTGCACATCATGCTCATTGTGGGTCATGATCGAAAGACTCGTCGAG
CGAGACAAGTAAAACCGAGTTGCAGCACGTTTTCGTTTTTATCCTTCAGA
AGTTGCACGTCTAGTCATATCGAAGCTAAGCTTTGCTCGAGACGACGCGT
GTTGCCTAGTGCTGCGGTCGACCACATCTGATGCGGACCGACGCGCCTTC
CTCCAGCCCAGCAGCTCTGACACATACCATGTGACAAGACCAAGGTCCCG
TCATCAAAGTGTTTGCGCGCCTCTTCTGCTATGTTCAAAACATTCGGTGA
TACACAAATGTAATTCGAAGGACGACAGCAGCAAAACTTGAACGACATGG
TTCAGGTTACGTTGCGTCTGTCTGACATGTGTTCGGCCGACTGATGTGGT
TGGACTAACTTTCTAAAAATCATGCTGTTGGATAGAGATGGATTCGTTGG
GTCATACTGATGAAATAATAAAGAAAAGGGTTGCATTATGAAGCATTCTA
TCCACGGCCTGTGGGTTGTCGATTCTTCCCATCCATTCAACCTTGGTTTG
GTCAGGTTGCCGCTGCCCCGTGCTGCTCCCCTTCCTCTCCTCCGAACACC
TCTCTTATCCGTCCGCTTCAATACAAGCTGCGCCTAAACCGTCCAACTCT
CTGCTATCTGTCCGCTTCGATCAAAGCTGCGCCTAAACCGTCCGATTCTC
TGCCCTATCTGCCCGCTTCAATACAAGCTGCGCCTAAACCGTCCAACTCT
CCGCTCTATCTGTCCGCTTCAATAAATGCCATGCCTAAACCGTCCAACTC
TCTGCTCTGCTGTTGTTCTTTGCTTTCTCCATTACCAACCGCGCGCGCGC
TCGGGGGGGGGGGGGGGGGGTACAATACCGACAGTTTGCACCAATAGAGA
GACGACACACATCACAGAGGACACACAACAATGCGTTTGTCGGAGACAGC
GGCGACGGCGGCGTTGTGCCTGGCGGGGGCCGGCAACGTCGCGGGTTTTC
AGTCACCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1585:199..1906-

>mRNA_E-siliculosus-1a_F_contig1585.3367.1 ID=mRNA_E-siliculosus-1a_F_contig1585.3367.1|Name=mRNA_E-siliculosus-1a_F_contig1585.3367.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1585:199..1906- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAAAGCTCACACATACACGACGAGAGACGGCCATTCGCATCGGTTCCAC
ACAGCTGAAGGGAAAAAGAGCTCCTAGAAAGACTCTCGGTGGAGGGAAAG
CTCACACATACACGACGAGAGACGGCCATTCGCATCGGTTCCACACAGCT
GAAGGGAAAAAGAGCTCCTAGAAAGACTCTCGGTGGAGTTTGCACCAATA
GAGAGACGACACACATCACAGAGGACACACAACAATGCGTTTGTCGGAGA
CAGCGGCGACGGCGGCGTTGTGCCTGGCGGGGGCCGGCAACGTCGCGGGT
TTTCAGTCACTTTGCACCAATAGAGAGACGACACACATCACAGAGGACAC
ACAACAATGCGTTTGTCGGAGACAGCGGCGACGGCGGCGTTGTGCCTGGC
GGGGGCCGGCAACGTCGCGGGTTTTCAGTCAC
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