mRNA_E-siliculosus-1a_F_contig1583.3358.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1583.3358.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI) HSP 1 Score: 541 bits (1395), Expect = 1.160e-187 Identity = 271/299 (90.64%), Postives = 280/299 (93.65%), Query Frame = 2
Query: 500 MSREGEWESALNMLQCIRDKGMKPSMSTHMDVIGVCRRALEWDQASKTYREMIEAHLTDHPFDDMACEDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGD----VEWPKWPLKVGRTGGAILELHELTQSIALETVQVALLDVIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLRPEFQQRNEGCVELKPASLEAYIRRMKRRGAAA 1384
MSREG+WE AL MLQ IRDKGMKPSMSTHMDVI VCRRALEWDQASK YREMIEAHLTDHPFDDMAC+DYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSK KLNLFSFDLLITTVA+QGYKEVSTMLYELGVVDADRALLETEGN VEWPKWPLKVGRTGGAILELH+LTQ IALETVQVALLDVIRRPLRRPYWSGDKRWRI+TGMGNNSKDREA+IKPAVVELLEDLGLRPEFQQRNEGCVELKPA+LEAYIRR + +AA
Sbjct: 1 MSREGDWEGALEMLQRIRDKGMKPSMSTHMDVISVCRRALEWDQASKAYREMIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKAKLNLFSFDLLITTVAKQGYKEVSTMLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIKPAVVELLEDLGLRPEFQQRNEGCVELKPANLEAYIRRQVTKASAA 299
BLAST of mRNA_E-siliculosus-1a_F_contig1583.3358.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI) HSP 1 Score: 155 bits (392), Expect = 1.350e-37 Identity = 99/292 (33.90%), Postives = 152/292 (52.05%), Query Frame = 2
Query: 512 GEWESALNMLQCIRDKGMKPSMSTHMDVIGVCRRALEWDQASKTYREM---------IEAHLTDHPFDDMACEDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGDVEWPKWPLKVGRTGGAILELHELTQSIALETVQVALLDVIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLRPEFQQRNEGCVELKPASLEAYIRR 1360
G+WE ++ +++ +RD PS++ ++ I CR+A E+D AS +M I+A+ HP + + VF +A M I+P TYRA++ L E W+ ++LL+EH +R+ F +D + + + + G+ E++TM++E + D L N E L+LH T S AL V+V LLD+ R+P R + + I+TGMGNNSKD EAVIKP V+ELL D+GL P + NEGC+ L+PA L+AY+ R
Sbjct: 167 GDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQ-----TQKVFC-----LAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKIEEL-----NSFAPPE---------------LDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADLQAYMAR 428
BLAST of mRNA_E-siliculosus-1a_F_contig1583.3358.1 vs. uniprot
Match: A0A835YUL6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.220e-24 Identity = 99/352 (28.12%), Postives = 165/352 (46.88%), Query Frame = 2
Query: 443 PSVSRVDPAAAEQETTIKRMSREGEWESALNMLQCIRDKGMKPSMSTHMDVIGVCRRALEWDQASKTYREMIEAHLTDHPFDDMACEDYEDESNH----VFA-----------RACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGDVE-WPKWPLKVGRTGGAILELHELTQSIALETVQVALLDVIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLE-DLGLRPEF----------------QQRNEGCVELKPASLEAYIRRMKRRGAAAAATPP 1399
P + P A+ IK+ + GEW A+ ++ +R+ + PS+ + D I RR LE+D+A +M +A + F A D D S+ VFA ++ M+ D ++P+ TYRA++ +C + W ++LLLEH R + F ++ + T + +G +++ ++YE R+L G+G E W + KV +LH T + A V+ AL D++R+P RP+ I+TG+G S++ AVIKPA++++L +L + E Q+ N GCVE++P L+A+ R R A A T P
Sbjct: 13 PPGAEAAPETAKYNDAIKKYASGGEWAKAVVLIDKMREINLSPSIEAYGDTITALRRGLEFDRADALLADMYDACMPADLFAKYAAADPSDASSTQTQCVFALENXXXXXXXXXXXXLLLCMRTDQ-LEPDVDTYRAVMGMCTKDRLWHLSLLLLEHMRLRGVQPGKFIYNEICTVLDMEGKHDLAEIVYE-------RSL------GEGVFEPWIEDDNKV--------DLHSFTLNTARAAVRSALTDMLRQPSGRPFHDPAAPMHIITGVGRRSEEGVAVIKPAILDMLNVELQIPAEXXXXXXXXXXXXXXXXVQKHNPGCVEIQPQHLQAWAR--ARLAAVGATTDP 340
BLAST of mRNA_E-siliculosus-1a_F_contig1583.3358.1 vs. uniprot
Match: A0A812I2Z0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812I2Z0_9DINO) HSP 1 Score: 58.9 bits (141), Expect = 2.330e-5 Identity = 60/216 (27.78%), Postives = 102/216 (47.22%), Query Frame = 2
Query: 791 NGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLE--------TEGNGDGDVE-----WPKWPLKVGRTGG--------------AILELHELTQSIALETVQVALLDVIR-RPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLRPEFQQRNEGCVELKPASLEAYI 1354
+GT+ AL ++ + SW++ + +LE + + +L+ + ++++ A Q + +L LG+++A +L+ T GD+ + + PL+ R GG L+LH L A V ALLD +P P W +VTG GN+S+ E+V++PAV++LL++LGL NEG V L L +I
Sbjct: 322 DGTFNALCRVFEHNSSWQSCLQILEEASLAGPQLSQLTLSVVVS--ACQKSTKWHQVLQLLGMMEASGMVLDDVFQAAGMTSHVYMGDLATALAWYRERPLRGLRLGGRKAGAGWFEHGRRWGHLDLHGLQPEEARLAVCCALLDATMVKPGMLPSWG----LVLVTGRGNHSEG-ESVVRPAVLQLLKELGLAARVDPYNEGRVVLPARELLTFI 530 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1583.3358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1583.3358.1 >prot_E-siliculosus-1a_F_contig1583.3358.1 ID=prot_E-siliculosus-1a_F_contig1583.3358.1|Name=mRNA_E-siliculosus-1a_F_contig1583.3358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=450bp MQLLIRRLAPGVNSRKTLACVLTPPPAGGTRRAITCFSAPSVAAPTTAPPback to top mRNA from alignment at E-siliculosus-1a_F_contig1583:12637..20316- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1583.3358.1 ID=mRNA_E-siliculosus-1a_F_contig1583.3358.1|Name=mRNA_E-siliculosus-1a_F_contig1583.3358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7680bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1583:12637..20316- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1583:12637..20316- >mRNA_E-siliculosus-1a_F_contig1583.3358.1 ID=mRNA_E-siliculosus-1a_F_contig1583.3358.1|Name=mRNA_E-siliculosus-1a_F_contig1583.3358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2700bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1583:12637..20316- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |