mRNA_E-siliculosus-1a_F_contig15800.3344.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15800.3344.1
Unique NamemRNA_E-siliculosus-1a_F_contig15800.3344.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: A0A5S3PPI4_9FLAO (Peptidoglycan glycosyltransferase n=2 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PPI4_9FLAO)

HSP 1 Score: 411 bits (1056), Expect = 5.080e-137
Identity = 201/232 (86.64%), Postives = 221/232 (95.26%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFR 696
            VKVLEATGIENV  + KKMGVFSKLPNQPSVALGTGEIYLNELAG YASYVN+GKAVLPYLIE+ITN+NDSILV+F PKRA+ RAFSKQT+QIM+EMM+STINTGTAKRIRSTYKL+NDIAGKTGTTQNNKDAWFVALTPK+VHITWVGLDNHEIGF+STS+GQGANAALP+FA WYQQLNK + F+ ITKARFEKPNP+VLDQLNCEP+K+DGF KRLFTNPKKKKSK+FR
Sbjct:  515 VKVLEATGIENVLNQAKKMGVFSKLPNQPSVALGTGEIYLNELAGAYASYVNNGKAVLPYLIETITNQNDSILVQFEPKRAKKRAFSKQTQQIMLEMMKSTINTGTAKRIRSTYKLNNDIAGKTGTTQNNKDAWFVALTPKLVHITWVGLDNHEIGFKSTSLGQGANAALPIFASWYQQLNKHKEFNAITKARFEKPNPFVLDQLNCEPVKRDGFFKRLFTNPKKKKSKKFR 746          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: A0A5B7SL41_9FLAO (Peptidoglycan glycosyltransferase n=2 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SL41_9FLAO)

HSP 1 Score: 378 bits (971), Expect = 2.940e-124
Identity = 180/235 (76.60%), Postives = 215/235 (91.49%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFRKQN 705
            VKV+EATGI+NV  + KKMGVFSKLP QPS+ALGTGEIY NELAGVYASYVNDG AVLPYLIE+IT++ DS+LV F PKRA+NRAFS QT QIM+EMM+STINTGTA RIR+TYK+ NDIAGKTGTTQNNKDAWFVALTPK+V +TWVGLDNHEIGF+STS+GQGANAALPLFALWY++L +D+ +D ITKA+FE+P+ YVLDQ++C+P+K+DGF KRLFT+P KKK+K+FR++N
Sbjct:  515 VKVMEATGIDNVIVQAKKMGVFSKLPEQPSLALGTGEIYANELAGVYASYVNDGMAVLPYLIETITDQKDSVLVNFEPKRAKNRAFSTQTRQIMLEMMKSTINTGTASRIRTTYKMQNDIAGKTGTTQNNKDAWFVALTPKLVSVTWVGLDNHEIGFKSTSLGQGANAALPLFALWYKELGRDKKYDPITKAKFERPSKYVLDQMDCDPVKRDGFFKRLFTDPNKKKTKKFRRKN 749          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: UPI0012699B09 (transglycosylase domain-containing protein n=1 Tax=Pelagihabitans pacificus TaxID=2696054 RepID=UPI0012699B09)

HSP 1 Score: 358 bits (920), Expect = 1.390e-116
Identity = 171/231 (74.03%), Postives = 206/231 (89.18%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQF 693
            VKVLEATGIENV  + K MGVFS LP QPS+ALGTGEIY+NELAGVYASYVNDG+AVLPYLIE+IT++ DS+L +F PKRA+ RAFS  T ++MI+MM++T++ GTAKRIR+TY L+NDIAGKTGTTQNNKDAWFVALTPK+VH+TWVGLDNHEIGFRSTS+GQGANAALPLFALWY++LN+ + F+ ITKARF++P+  VLD+LNC P+K+DGF KRLF NP KK+ K+F
Sbjct:  520 VKVLEATGIENVLIQAKNMGVFSSLPEQPSLALGTGEIYVNELAGVYASYVNDGRAVLPYLIETITDQKDSVLTRFEPKRARERAFSSTTRELMIQMMKATVDKGTAKRIRTTYGLNNDIAGKTGTTQNNKDAWFVALTPKLVHVTWVGLDNHEIGFRSTSLGQGANAALPLFALWYKELNRAKEFNSITKARFKRPSKTVLDELNCPPVKRDGFFKRLFKNPNKKRRKRF 750          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: A0A7K0E637_9FLAO (Peptidoglycan glycosyltransferase n=2 Tax=Kriegella sp. EG-1 TaxID=2664451 RepID=A0A7K0E637_9FLAO)

HSP 1 Score: 356 bits (914), Expect = 1.040e-115
Identity = 176/235 (74.89%), Postives = 200/235 (85.11%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFRKQN 705
            VKVLE TGI NV  + K MGVFS+LP QPS+ALGTGEIY+NELAG YASYVN+GKAVLPYLIE ITN+ DSIL  F PKRA   AFSK+T QIM+EMM+STIN GTA R+R++Y L NDIAGKTGTTQNNKDAWFVALTPK+VH+TWVGLDNHEIGF+STS+GQGANAALPLFALW Q++NK   F+YIT+ARF KPN  VL  L+CEPIK+DGF KRLF NP KKK K+FR +N
Sbjct:  514 VKVLEKTGINNVLVQAKNMGVFSELPKQPSLALGTGEIYVNELAGAYASYVNNGKAVLPYLIEKITNQKDSILTSFEPKRAVKSAFSKETGQIMLEMMKSTINHGTASRLRTSYNLKNDIAGKTGTTQNNKDAWFVALTPKLVHVTWVGLDNHEIGFKSTSLGQGANAALPLFALWMQKMNKAPEFNYITQARFPKPNNLVLRSLDCEPIKRDGFFKRLFKNPNKKKVKKFRSKN 748          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: A0A7Y2DHS4_9FLAO (Peptidoglycan glycosyltransferase n=1 Tax=Pricia sp. TaxID=2268138 RepID=A0A7Y2DHS4_9FLAO)

HSP 1 Score: 355 bits (911), Expect = 2.920e-115
Identity = 170/235 (72.34%), Postives = 210/235 (89.36%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFRKQN 705
            VKVLE +GI+NV    K MGVFS+LP QPS+ALGTGEIYLNELAGVYASYVNDGKAVLPYLIE+I ++ DS+L KF PKRA++ AFS++T QIM+EMM++TI+ GTA RIR+TYKL+NDIAGKTGTTQNNKDAWFVAL+PK+VH+TWVGLDNHEIGFRST++GQGANAALP++A + Q++NK  S+D ITKARFEKPNP V++ L+CEP+K+DGF KRLF NP KKK+K+F++++
Sbjct:  514 VKVLEESGIKNVVTMAKNMGVFSELPEQPSLALGTGEIYLNELAGVYASYVNDGKAVLPYLIETIADQKDSVLTKFEPKRAKSPAFSEETRQIMVEMMKATIDKGTASRIRTTYKLNNDIAGKTGTTQNNKDAWFVALSPKLVHVTWVGLDNHEIGFRSTTLGQGANAALPIYANFMQEMNKHPSYDAITKARFEKPNPAVVEMLDCEPVKRDGFFKRLFKNPDKKKTKKFKRKD 748          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: A0A1G9WI04_9FLAO (Peptidoglycan glycosyltransferase n=1 Tax=Kriegella aquimaris TaxID=192904 RepID=A0A1G9WI04_9FLAO)

HSP 1 Score: 355 bits (910), Expect = 3.820e-115
Identity = 177/235 (75.32%), Postives = 203/235 (86.38%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFRKQN 705
            VKVLE TGIENV  + K MG+FS+LP QPS+ALGTGEIYLNELAG YASYVN GKAV PYLI+ I N+ DSIL  F PKRA+ RAFS++  QIMIEMM+STIN+GTA RIRS+YKL+N IAGKTGTTQNNKDAWFVALTPK+VH+TWVGLDNHEIGFRSTS+GQGANAALPLFALW Q+LNKD  FD ITKA+F++P+  VLD+LNCEP+K+DGF KRLF NP KKK  +FR +N
Sbjct:  513 VKVLEKTGIENVIVQAKNMGIFSELPRQPSLALGTGEIYLNELAGAYASYVNGGKAVYPYLIQEIRNQKDSILEHFEPKRARKRAFSEENRQIMIEMMKSTINSGTASRIRSSYKLNNAIAGKTGTTQNNKDAWFVALTPKLVHVTWVGLDNHEIGFRSTSLGQGANAALPLFALWMQKLNKDPEFDEITKAQFKRPSFSVLDKLNCEPVKRDGFFKRLFKNPNKKK--EFRTRN 745          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: G0L1H3_ZOBGA (Peptidoglycan glycosyltransferase n=2 Tax=Zobellia TaxID=112040 RepID=G0L1H3_ZOBGA)

HSP 1 Score: 355 bits (910), Expect = 3.920e-115
Identity = 170/235 (72.34%), Postives = 204/235 (86.81%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFRKQN 705
            VKVLE  GI NV    K MG+FSKLP QPS+ALGTGEIYLNELAG YASYVNDGKAVLPYLIE IT++ DS+L++F+PKRA+  AFS++T QIMIEMM+ TI+ GTA RIRSTYKL+N IAGKTGTTQNNKDAWFVA+TPK+VH+TWVGLD+HEIGF+STS+GQGANAALP+FA W Q++NK   ++ ITKA+FE+PNP +L+ L+CEP+K+DGF KRLF NP KKK+K+FRK N
Sbjct:  515 VKVLEKAGISNVLTMAKNMGIFSKLPEQPSLALGTGEIYLNELAGAYASYVNDGKAVLPYLIEKITDKKDSVLMEFKPKRARKTAFSEETRQIMIEMMKGTIDRGTASRIRSTYKLNNAIAGKTGTTQNNKDAWFVAITPKLVHVTWVGLDHHEIGFKSTSLGQGANAALPIFAKWMQEMNKHPYYNEITKAQFERPNPAILEMLDCEPVKRDGFFKRLFKNPDKKKTKKFRKGN 749          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: UPI00193A5981 (transglycosylase domain-containing protein n=1 Tax=Aurantibacter crassamenti TaxID=1837375 RepID=UPI00193A5981)

HSP 1 Score: 353 bits (905), Expect = 2.300e-114
Identity = 170/235 (72.34%), Postives = 202/235 (85.96%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFRKQN 705
            VK+LE TGI+NV  + K MG+FSKLP QPS+ALGTGEIY NELAG YAS+VN+G+AVLPYLIE ITN+ DS+L  F PKRA   AFSK+T +IM+EMM+STIN GTA R+RSTYKL NDIAGKTGTTQNNKDAWFVALTPK+VH+TWVGLDNHEIGF++TS+GQGANAALPLFALW Q++N++  F+YIT+ARF +P+  VL  L+CEPIK+DGF KRLF NP KKK K+FR +N
Sbjct:  514 VKILEKTGIDNVLVQAKNMGIFSKLPKQPSLALGTGEIYANELAGAYASFVNNGRAVLPYLIEKITNQKDSVLTNFEPKRAVKSAFSKETGEIMLEMMKSTINQGTASRLRSTYKLRNDIAGKTGTTQNNKDAWFVALTPKIVHVTWVGLDNHEIGFKNTSLGQGANAALPLFALWMQKMNQESDFNYITQARFPRPSNSVLRSLDCEPIKRDGFFKRLFKNPNKKKVKKFRSKN 748          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: UPI001661FB36 (transglycosylase domain-containing protein n=1 Tax=Maribacter arenosus TaxID=1854708 RepID=UPI001661FB36)

HSP 1 Score: 352 bits (902), Expect = 4.440e-114
Identity = 170/232 (73.28%), Postives = 203/232 (87.50%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFR 696
            VKVLE TGIENV ++ K MGV S+LP QPS+ALGTGE+Y+NE+AG YASY N+GKAV PYLI++ITNR DSIL  F PKR+ + AFSK+T QIM+EMM+STI+ GTA RIR++YKL NDIAGKTGTTQNNKDAWFVALTPK+VH++WVGLDNHEIGF+STS+GQGANAALPLFALWYQ+LN+D  F+ +TKARF KP+  VL+ L+CEPIK+DGF KRLF NP KKK+K+FR
Sbjct:  500 VKVLEKTGIENVIQQAKNMGVLSELPKQPSLALGTGELYVNEMAGAYASYTNNGKAVYPYLIQTITNRKDSILAHFEPKRSNSFAFSKKTGQIMLEMMKSTIDQGTASRIRTSYKLKNDIAGKTGTTQNNKDAWFVALTPKLVHVSWVGLDNHEIGFKSTSLGQGANAALPLFALWYQKLNRDPEFNVMTKARFSKPDATVLELLDCEPIKRDGFFKRLFKNPNKKKAKRFR 731          
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Match: A0A1M6MQ79_9FLAO (Peptidoglycan glycosyltransferase n=1 Tax=Pseudozobellia thermophila TaxID=192903 RepID=A0A1M6MQ79_9FLAO)

HSP 1 Score: 348 bits (893), Expect = 1.200e-112
Identity = 165/232 (71.12%), Postives = 204/232 (87.93%), Query Frame = 1
Query:    1 VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASYVNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRSTINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGLDNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPYVLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFR 696
            VKV+E TGI+NV    K MG+F++LP QPS+ALGTGEIYLNELAG YASY+N+G+AVLPYLI +I ++NDS+LVKF PKRA   AFS+QT QIM+EMM+ST+N+GTA R+RSTYKL+NDIAGKTGTTQNNKDAWFVALTPK+VH+TWVGLDNHEIGF+STS+GQGA+AALP+FA + Q++NK  S++ IT+A+F KP+P VL  L+CEP+K+DGFLKRLF NP KK+ K+FR
Sbjct:  510 VKVMEKTGIDNVIAMAKNMGIFTELPKQPSLALGTGEIYLNELAGAYASYMNEGRAVLPYLINAIADKNDSLLVKFEPKRATQPAFSEQTRQIMVEMMKSTVNSGTASRLRSTYKLNNDIAGKTGTTQNNKDAWFVALTPKLVHVTWVGLDNHEIGFKSTSLGQGASAALPIFAKFMQKMNKHASYNPITRAQFSKPDPVVLQMLDCEPVKRDGFLKRLFKNPNKKRKKKFR 741          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15800.3344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S3PPI4_9FLAO5.080e-13786.64Peptidoglycan glycosyltransferase n=2 Tax=Maribact... [more]
A0A5B7SL41_9FLAO2.940e-12476.60Peptidoglycan glycosyltransferase n=2 Tax=Aggregat... [more]
UPI0012699B091.390e-11674.03transglycosylase domain-containing protein n=1 Tax... [more]
A0A7K0E637_9FLAO1.040e-11574.89Peptidoglycan glycosyltransferase n=2 Tax=Kriegell... [more]
A0A7Y2DHS4_9FLAO2.920e-11572.34Peptidoglycan glycosyltransferase n=1 Tax=Pricia s... [more]
A0A1G9WI04_9FLAO3.820e-11575.32Peptidoglycan glycosyltransferase n=1 Tax=Kriegell... [more]
G0L1H3_ZOBGA3.920e-11572.34Peptidoglycan glycosyltransferase n=2 Tax=Zobellia... [more]
UPI00193A59812.300e-11472.34transglycosylase domain-containing protein n=1 Tax... [more]
UPI001661FB364.440e-11473.28transglycosylase domain-containing protein n=1 Tax... [more]
A0A1M6MQ79_9FLAO1.200e-11271.12Peptidoglycan glycosyltransferase n=1 Tax=Pseudozo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15800contigE-siliculosus-1a_F_contig15800:2..709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size708
Model size708
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01003,ko01011
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
CAZyGT51
COG Functional cat.M
EC2.4.1.129,3.4.16.4
EggNOG OGs1HX1V@117743,4NECJ@976,COG5009@1,COG5009@2
EggNOG free text desc.penicillin-binding protein
KEGG Pathwayko00550,ko01100,ko01501,map00550,map01100,map01501
KEGG koko:K05366
Preferred nameponA
Seed eggNOG ortholog143224.JQMD01000002_gene2069
Seed ortholog evalue3.3e-92
Seed ortholog score344.7
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928095.3528304-CDS-E-siliculosus-1a_F_contig15800:1..7091622928095.3528304-CDS-E-siliculosus-1a_F_contig15800:1..709Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15800 2..709 +
1696318802.515747-CDS-E-siliculosus-1a_F_contig15800:1..7091696318802.515747-CDS-E-siliculosus-1a_F_contig15800:1..709Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15800 2..709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15800.3344.1prot_E-siliculosus-1a_F_contig15800.3344.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15800 2..709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15800.3344.1

>prot_E-siliculosus-1a_F_contig15800.3344.1 ID=prot_E-siliculosus-1a_F_contig15800.3344.1|Name=mRNA_E-siliculosus-1a_F_contig15800.3344.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=236bp
VKVLEATGIENVQKKKKKMGVFSKLPNQPSVALGTGEIYLNELAGVYASY
VNDGKAVLPYLIESITNRNDSILVKFRPKRAQNRAFSKQTEQIMIEMMRS
TINTGTAKRIRSTYKLSNDIAGKTGTTQNNKDAWFVALTPKMVHITWVGL
DNHEIGFRSTSVGQGANAALPLFALWYQQLNKDRSFDYITKARFEKPNPY
VLDQLNCEPIKKDGFLKRLFTNPKKKKSKQFRKQN*
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mRNA from alignment at E-siliculosus-1a_F_contig15800:2..709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15800.3344.1 ID=mRNA_E-siliculosus-1a_F_contig15800.3344.1|Name=mRNA_E-siliculosus-1a_F_contig15800.3344.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15800:2..709+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTAAAGTTTTGGAAGCAACTGGTATTGAAAATGTACAAAAAAAAAAAAA AAAGATGGGTGTATTTTCGAAGCTTCCAAATCAACCTTCTGTCGCCTTAG GTACGGGTGAAATTTACTTGAATGAGCTCGCTGGTGTTTATGCTAGTTAC GTAAATGATGGAAAAGCGGTGCTACCCTATTTGATCGAAAGTATTACAAA TCGAAATGATTCTATTTTAGTGAAATTTAGACCAAAAAGAGCTCAAAATC GTGCATTTTCGAAACAAACAGAGCAAATAATGATAGAAATGATGAGATCT ACAATTAATACAGGCACAGCAAAACGCATTCGTTCAACTTATAAATTGAG TAATGATATCGCAGGAAAAACAGGTACGACCCAAAATAACAAAGATGCAT GGTTTGTAGCCCTTACCCCCAAAATGGTTCATATCACATGGGTGGGATTG GATAATCACGAAATAGGATTCAGAAGTACAAGTGTCGGTCAAGGTGCAAA TGCTGCCTTACCCTTATTTGCACTATGGTATCAGCAGTTAAATAAGGACC GGAGTTTTGACTATATAACAAAAGCTCGTTTTGAAAAACCGAATCCGTAT GTTTTAGATCAACTTAACTGTGAGCCTATTAAAAAAGATGGATTTTTGAA ACGATTATTTACAAATCCGAAGAAAAAGAAATCCAAGCAATTCAGAAAGC AAAACTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15800:2..709+

>mRNA_E-siliculosus-1a_F_contig15800.3344.1 ID=mRNA_E-siliculosus-1a_F_contig15800.3344.1|Name=mRNA_E-siliculosus-1a_F_contig15800.3344.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1416bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15800:2..709+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTAAAGTTTTGGAAGCAACTGGTATTGAAAATGTACAAAAAAAAAAAAA
AAAGATGGGTGTATTTTCGAAGCTTCCAAATCAACCTTCTGTCGCCTTAG
GTACGGGTGAAATTTACTTGAATGAGCTCGCTGGTGTTTATGCTAGTTAC
GTAAATGATGGAAAAGCGGTGCTACCCTATTTGATCGAAAGTATTACAAA
TCGAAATGATTCTATTTTAGTGAAATTTAGACCAAAAAGAGCTCAAAATC
GTGCATTTTCGAAACAAACAGAGCAAATAATGATAGAAATGATGAGATCT
ACAATTAATACAGGCACAGCAAAACGCATTCGTTCAACTTATAAATTGAG
TAATGATATCGCAGGAAAAACAGGTACGACCCAAAATAACAAAGATGCAT
GGTTTGTAGCCCTTACCCCCAAAATGGTTCATATCACATGGGTGGGATTG
GATAATCACGAAATAGGATTCAGAAGTACAAGTGTCGGTCAAGGTGCAAA
TGCTGCCTTACCCTTATTTGCACTATGGTATCAGCAGTTAAATAAGGACC
GGAGTTTTGACTATATAACAAAAGCTCGTTTTGAAAAACCGAATCCGTAT
GTTTTAGATCAACTTAACTGTGAGCCTATTAAAAAAGATGGATTTTTGAA
ACGATTATTTACAAATCCGAAGAAAAAGAAATCCAAGCAATTCAGAAAGC
AAAACTAAGTTAAAGTTTTGGAAGCAACTGGTATTGAAAATGTACAAAAA
AAAAAAAAAAAGATGGGTGTATTTTCGAAGCTTCCAAATCAACCTTCTGT
CGCCTTAGGTACGGGTGAAATTTACTTGAATGAGCTCGCTGGTGTTTATG
CTAGTTACGTAAATGATGGAAAAGCGGTGCTACCCTATTTGATCGAAAGT
ATTACAAATCGAAATGATTCTATTTTAGTGAAATTTAGACCAAAAAGAGC
TCAAAATCGTGCATTTTCGAAACAAACAGAGCAAATAATGATAGAAATGA
TGAGATCTACAATTAATACAGGCACAGCAAAACGCATTCGTTCAACTTAT
AAATTGAGTAATGATATCGCAGGAAAAACAGGTACGACCCAAAATAACAA
AGATGCATGGTTTGTAGCCCTTACCCCCAAAATGGTTCATATCACATGGG
TGGGATTGGATAATCACGAAATAGGATTCAGAAGTACAAGTGTCGGTCAA
GGTGCAAATGCTGCCTTACCCTTATTTGCACTATGGTATCAGCAGTTAAA
TAAGGACCGGAGTTTTGACTATATAACAAAAGCTCGTTTTGAAAAACCGA
ATCCGTATGTTTTAGATCAACTTAACTGTGAGCCTATTAAAAAAGATGGA
TTTTTGAAACGATTATTTACAAATCCGAAGAAAAAGAAATCCAAGCAATT
CAGAAAGCAAAACTAA
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