mRNA_E-siliculosus-1a_F_contig158.3340.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig158.3340.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI) HSP 1 Score: 1552 bits (4018), Expect = 0.000e+0 Identity = 820/1008 (81.35%), Postives = 845/1008 (83.83%), Query Frame = 3
Query: 108 MNVSAQAAKAXXXXXXSQQPRQAHRPQQSPQQGGHGTSGGIGTHDLSLPWLADRFYLNVIPAVRESERNGQGEDWKISQDTNVKSESNRSSGKHDEGGDSVGRGYANGPFFSLERLVDVVSGNGGPGIKAAIFGTMSLQIGRLAEEIPSLFSTRSNLTVPVLVLHGEKSLRRLRNSSAAVIDTTRGEIAGGS---KGGASDYRTSSDRGADYILFRDSLGKNASSEQRERLKAAGREDRLDYWEMTMPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAVDATWVQRFGQGKNGGAACARDLDHGGTSEWKGDFDVTLQAFLAGYSRLMRQDPNKKVETATSRRRLRNTPIEFMLRELGVERLGDSFDFSTAAVDLVPTVPTPMGATLARVRPWERPXXXXXXXXXXXXXXXXXXXXXXXXXAPALAVAAGATASGGWCGDVNRSVSLQPSSNESTCWDGGRGGGNTRVESSSRYCRQDPCPASPSMSPLPLLPVSTHQENGAIQGGARGGGRLSAATGSRDGEDPDDDLDGQRADDSAAXXXXXXXXXXXXXXXXXXXXXXXXGDVDECGGTGGTDLRCYGGQLRMKYLLSKRKSQVEEAGPKDLLILQPTSIGAGIDAGFVEMFAKNLMPDSAGPLRGAWKESRLDSVRIVWPSMQYMDVCRKDMSKSTLLRDRQASTTMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLQTFQLHPATALALPLRPAHVKSVMRLRKAPFSLRPQPPSPQKQAIFAPDKNTNTCDRGGNGNSTMSHAAGSSAAV--------------GRIADMRGDTGCDGARPVVCANVQHFSWFLLTSACLSKGAQGEVVAHGDRTGTGTAASGAIFKNVELGVLFHSSPERAYHTAPLPDCACPACDCSPGSGVPPHRTRTDTRELPPPPP---MVSPRSIPLPVPFCLHSEAYTDQLAESPSVRFAPYMHTLKSDRPWSVEVQRLLNSNVREAQFA 3071
MNVSAQAA A SQQPRQAHRPQQSP+QGGHGTSGGIG HDLSLPWLADRFYLNVIPAVRESERNGQGEDWKISQDTNVKSESNRS KHD GGDSVGRGYANGPFFSLERLVDVVSG GGPGIKAAIFGTMSLQIGRLAEEIPSLFS RSNLTVPVLVLHGEKSLRRLR+SSA VI+TTRGE A KGGASDYRT+SD GADYILFR+SLGKNASSEQRERLKAAGREDRLDYWEM+MPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTA+DATWVQRFGQ G AAC RDLD+GGTSEWKGDF VTLQAFLAGYSRLMRQDPNKKV TATSRRRLRNTP+EFMLRELG+ERLGDSFDF TAAVDLVPTVPTPMGATL SVSLQP+SNESTCWDGGRGGGNT VESSSR C QDPC ASPSMSPLPLLPVSTHQENGA + G GGGRLSAATGS DGEDPDDDLDGQRA DSAA GD ECGG GGTDLR YGGQLRMKYLLSKR+ QVEEAGP+DLLILQPTSIGAGIDAGF+E+FAKNLMPDSAGPLRGAWKESRLDSVRIVWPSMQYM CRK+MSKSTLLRDRQAST MEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLQTFQLHPATALALPLRPAHVKSVMRLRKAPFSLRPQPPSPQKQAIF P+KNTNTCDRGG GNSTMSH++ A GR AD+RGDTGCDGARPVVC NVQHFSWFLLTSACLSKGAQGEVVAHGDRTGTGTAA GAIFKNVELGVLFHSSPERAY+TAPLPDCACP+C CSPGSG PPH TRTDTRELPP MVSPRSIPLPVPFCLHSEAYTD L ESP+VRFAPYMHTLKS+RPWSVEVQRLLNSNVREAQFA
Sbjct: 1 MNVSAQAATAAAASDVSQQPRQAHRPQQSPKQGGHGTSGGIGGHDLSLPWLADRFYLNVIPAVRESERNGQGEDWKISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGKGGPGIKAAIFGTMSLQIGRLAEEIPSLFS-RSNLTVPVLVLHGEKSLRRLRDSSAEVINTTRGEAAXXXXXXKGGASDYRTNSDHGADYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFGQSNKGEAACTRDLDNGGTSEWKGDFGVTLQAFLAGYSRLMRQDPNKKVGTATSRRRLRNTPMEFMLRELGIERLGDSFDFRTAAVDLVPTVPTPMGATL--------------------------------------------------------SVSLQPNSNESTCWDGGRGGGNTPVESSSRSCWQDPCLASPSMSPLPLLPVSTHQENGATRRG--GGGRLSAATGSGDGEDPDDDLDGQRAADSAATSSRADDFDAPDGGPARGAPDTEGGDAIECGGAGGTDLRYYGGQLRMKYLLSKRRGQVEEAGPEDLLILQPTSIGAGIDAGFLEIFAKNLMPDSAGPLRGAWKESRLDSVRIVWPSMQYMGACRKEMSKSTLLRDRQASTIMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLQTFQLHPATALALPLRPAHVKSVMRLRKAPFSLRPQPPSPQKQAIFTPNKNTNTCDRGGIGNSTMSHSSAEGAVADAXXXXXXXXXXXXGRTADVRGDTGCDGARPVVCTNVQHFSWFLLTSACLSKGAQGEVVAHGDRTGTGTAAPGAIFKNVELGVLFHSSPERAYYTAPLPDCACPSCGCSPGSGGPPHCTRTDTRELPPXXXXXSMVSPRSIPLPVPFCLHSEAYTDPLTESPNVRFAPYMHTLKSERPWSVEVQRLLNSNVREAQFA 949
BLAST of mRNA_E-siliculosus-1a_F_contig158.3340.1 vs. uniprot
Match: A0A6H5KRI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI8_9PHAE) HSP 1 Score: 992 bits (2565), Expect = 0.000e+0 Identity = 553/688 (80.38%), Postives = 570/688 (82.85%), Query Frame = 3
Query: 1086 TLQAFLAGYSRLMRQDPNKKVETATSRRRLRNTPIEFMLRELGVERLGDSFDFSTAAVDLVPTVPTPMGATLARVRPWERPXXXXXXXXXXXXXXXXXXXXXXXXXAPALAVAAGATASGGWCGDVNRSVSLQPSSNESTCWDGGRGGGNTRVESSSRYCRQDPCPASPSMSPLPLLPVSTHQENGAIQGGARGGGRLSAATGSRDGEDPDDDLDGQRADDSAAXXXXXXXXXXXXXXXXXXXXXXXXGDVDECGGTGGTDLRCYGGQLRMKYLLSKRKSQVEEAGPKDLLILQPTSIGAGIDAGFVEMFAKNLMPDSAGPLRGAWKESRLDSVRIVWPSMQYMDVCRKDMSKSTLLRDRQASTTMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLQTFQLHPATALALPLRPAHVKSVMRLRKAPFSLRPQPPSPQKQAIFAPDKNTNTCDRGGNGNSTMSHAAGSSA-------------AVGRIADMRGDTGCDGARPVVCANVQHFSWFLLTSACLSK------GAQGEVVAHGDRTGTGTAASGAIFKNVELGVLFHSSPERAYHTAPLPDCACPACDCSPGSGVPPHRTRTDTRELPPPPP-------MVSPRSIPLPVPFCLHSEAYTDQLAESPSVRFAPYMHTLKSDRPWSVEVQRLLNSNVREAQFA 3071
TLQAFLA YSRLMRQDP K ETATSRR+LRNTPIEFMLRELGVERLGDSFDFSTAAVDLVPTVPTPMGATLARVRPWERP XXXXXXXXXXXXXXXXXXXXXX APALAVAA A A GG GDVNRSVSLQP+SNES CW+ GRGGG+T VESSSRYC QDPCPASPSMSPLPLLPV RL AATGSRDG D DDDL+GQR DSA GD EC GGTDLRCYGGQLRMKYLLSKR+SQVEEAGP+D+LILQPTSIGAGIDAGF+E+FAKNLMPDSAGPLRGAWKESRLDSVRIVWPSMQYMD CRK+MSKSTLLRDRQ STTMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCL+TFQLHPATALALPLRPAHVKS MRLRKAPF LRPQ PSPQKQAIFAP+KNTNTCDRGG GNS MSH++ A A GR AD+RGDTGCDGARPVVCANVQHFSWFLLTSACLSK GAQGEVVAHGDRTGTGTAASGAIFKNVELGVLFHSSPERAYHTAPLPDCACPAC CSPGSGVPPHR RTDT ELPP MVSPRSIPLPVPF L SEAYTD L ESP+ RFAPYMHTLKSDRPWSVEVQ LLNSNVREAQFA
Sbjct: 8 TLQAFLAEYSRLMRQDPKTKDETATSRRKLRNTPIEFMLRELGVERLGDSFDFSTAAVDLVPTVPTPMGATLARVRPWERPPXXXXXXXXXXXXXXXXXXXXXXS-APALAVAADANAIGGCGGDVNRSVSLQPNSNESICWERGRGGGSTPVESSSRYCWQDPCPASPSMSPLPLLPVRRRNAPXGXXXXXXXXXRLCAATGSRDGNDWDDDLEGQRGADSADMSSRADDFDSPDGDPARGGPDTKGGDAVECDRAGGTDLRCYGGQLRMKYLLSKRRSQVEEAGPEDVLILQPTSIGAGIDAGFLEIFAKNLMPDSAGPLRGAWKESRLDSVRIVWPSMQYMDACRKEMSKSTLLRDRQVSTTMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLRTFQLHPATALALPLRPAHVKSAMRLRKAPFPLRPQLPSPQKQAIFAPNKNTNTCDRGGIGNSAMSHSSAEGAVAXXXXXXXXXYAAAGRTADVRGDTGCDGARPVVCANVQHFSWFLLTSACLSKAPSRAAGAQGEVVAHGDRTGTGTAASGAIFKNVELGVLFHSSPERAYHTAPLPDCACPACGCSPGSGVPPHRIRTDTLELPPXXXXXXXXXXMVSPRSIPLPVPFSLDSEAYTDPLTESPNCRFAPYMHTLKSDRPWSVEVQSLLNSNVREAQFA 694
BLAST of mRNA_E-siliculosus-1a_F_contig158.3340.1 vs. uniprot
Match: A0A1E7FI04_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FI04_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.740e-6 Identity = 50/158 (31.65%), Postives = 75/158 (47.47%), Query Frame = 3
Query: 879 LGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTA--VDATWVQRFGQGKNG--GAACARDLDHGGTSEWK-GDFDVTLQAFLAGYSRLMRQDPNKKVETATSRRRLRNT---------------PI-EFMLRELGVERLGD---SFDFSTAAVDLVPTVP 1280
+GVHHPKF LLF K +LVV V T NL + V+ +W+QRF + + G G + DH + + DF LQ FL S ++ E A+++ N P+ EF+ + LG+ L + S++F +A LVP +P
Sbjct: 238 MGVHHPKFMLLFEKSGNLVVIVTTSNLSKTSCSTVEGSWIQRFYRNRVGDSGRGSRKRNDHNDKQQAQTNDFGPVLQDFLLQLSEAAAHPSGRRKEVASTKPPTNNNSNKDKNKNNPKNNILPLSEFLSKHLGLNSLNEFSSSYNFESARAHLVPVIP 395
BLAST of mRNA_E-siliculosus-1a_F_contig158.3340.1 vs. uniprot
Match: K0TAQ0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAQ0_THAOC) HSP 1 Score: 60.8 bits (146), Expect = 1.640e-5 Identity = 94/376 (25.00%), Postives = 146/376 (38.83%), Query Frame = 3
Query: 1947 KDLLILQPTSIGAGIDAGFVEMFAKNLMPDSAGPLRGAWKESRLDSVRIVWPSMQY---MDVCRKDMSKSTLLRDRQASTTMEVDHKYVMGEDGKTPD-------WDNNGFVFMSPDQFDGMGLDLHCCLQTFQ--------LHPATALALPLRPAHVKSVMRLRKAPFSLRPQPPSPQKQAIFAPDKNTNTCDRGGNGNSTMSHAAGSSAAVGRIADMRGDTGCDGARPVVCANVQHFSWFLLTSACLSKGAQGEVVAHGDRTGTGTAASGAI-FKNVELGVLFHS------SPERAYHTAPLPDCACPACDCSPGSGVPPHRTRTDTRELPPPPPMVSPRSIPLPVPFCLHSEAYTDQLAESPSVRFAPYMHTL 2999
+D L++QPTS+G +E + + D A S ++ + I+WP Y M R+ K L ++ T E K G+D W + FVF+S + F + + + FQ L P T++AL H+KSV RL K FS + + C++ D G ++ WFLLTSACLSKGAQG + T A S ++ + N ELGV+F S +R Y + P C C G + +R R + + + + + LP+PF L+ E+Y Q +S + + PYM+ +
Sbjct: 635 RDQLLIQPTSLGGNWKQDDLEALVEAYLCDEFEKKDDA--SSIIERLNIIWPDFDYFHRMKASRRATWKKCLAQE---GITKEAHQKQRKGKDRNAAQALLEDKSWSGDMFVFLSSEAFSKLERSVIGRMSLFQMSNNMRENLMPYTSVAL-----HIKSVCRLLK--FSGKER------------------CEK-----------------------KNEDEG------------EYIQWFLLTSACLSKGAQGRI------TPRRMAGSNSMSYTNFELGVMFCSRLVGDKETDRLYVSDPK---HVRGCQCGQGRRM--YRERFTQAKKGNLSFLNNVKKVHLPIPFSLNPESY-QQDPDSYLMSWTPYMNEI 933 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig158.3340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig158.3340.1 >prot_E-siliculosus-1a_F_contig158.3340.1 ID=prot_E-siliculosus-1a_F_contig158.3340.1|Name=mRNA_E-siliculosus-1a_F_contig158.3340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=989bp MNVSAQAAKAAAASAVSQQPRQAHRPQQSPQQGGHGTSGGIGTHDLSLPWback to top mRNA from alignment at E-siliculosus-1a_F_contig158:30645..42561+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig158.3340.1 ID=mRNA_E-siliculosus-1a_F_contig158.3340.1|Name=mRNA_E-siliculosus-1a_F_contig158.3340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11917bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig158:30645..42561+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig158:30645..42561+ >mRNA_E-siliculosus-1a_F_contig158.3340.1 ID=mRNA_E-siliculosus-1a_F_contig158.3340.1|Name=mRNA_E-siliculosus-1a_F_contig158.3340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5934bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig158:30645..42561+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |