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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1576.3324.1 vs. uniprot
Match: D8LKH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH3_ECTSI) HSP 1 Score: 333 bits (855), Expect = 2.500e-115 Identity = 169/181 (93.37%), Postives = 174/181 (96.13%), Query Frame = 1
Query: 1 MNHQEAYRYTVGKGNFEAVKRSLLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTSELSARRGSQRRRAAAKRAMVPIESDTFQCGGYNSDKLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPRGQNFDSGAVSCRRGSVGGTIGARKGGARSAEATAMAAESRRKAHQHL 543
MNHQEAYRYT GKGNFEA KR+LLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTS+LSARRGSQRRRAAAKRAMVPIESD FQCGGYNS+KLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPP GQ+F+SGA SCRRGSVGG IGARKGGARSAEA AMAAESRRKAHQHL
Sbjct: 1 MNHQEAYRYTAGKGNFEAEKRTLLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTSDLSARRGSQRRRAAAKRAMVPIESDPFQCGGYNSEKLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPGGQDFNSGAASCRRGSVGGAIGARKGGARSAEAAAMAAESRRKAHQHL 181
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 546 |
| Model size | 546 |
| Exons | 5 |
| Ec32 ortholog | Ec-16_002960.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1576.3324.1 >prot_E-siliculosus-1a_F_contig1576.3324.1 ID=prot_E-siliculosus-1a_F_contig1576.3324.1|Name=mRNA_E-siliculosus-1a_F_contig1576.3324.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=182bp
MNHQEAYRYTVGKGNFEAVKRSLLEKEDALRKGTGSFLMADTIQRFRSSS
EGRPPTSELSARRGSQRRRAAAKRAMVPIESDTFQCGGYNSDKLKREETR
RQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPRGQNFDSGAVSCRRGSV
GGTIGARKGGARSAEATAMAAESRRKAHQHL* back to topmRNA from alignment at E-siliculosus-1a_F_contig1576:10305..13423- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1576.3324.1 ID=mRNA_E-siliculosus-1a_F_contig1576.3324.1|Name=mRNA_E-siliculosus-1a_F_contig1576.3324.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3119bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1576:10305..13423- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACCACCAGGAGGCCTACCGCTACACTGTCGGCAAGGTGCGTACTCT
TGCAACCTTGTGGAAGTTAGTTAGGACAATGCGAGGTAACCGGCAAGAAC
ATTTTACGTTAACGTAATCGTCCTTGCTGTTGTCTGCACGCGTTGCCGCG
AGATGAGAGCCTGTGACCCTCGCAACAATTTGCGAACGTGTGCTTCACGC
CAGTCGTTATTCTTGTGGCCGCTGCTGCTTGTTTTTTTCTCTATTTTTCG
TGTCGGATGCCAACATTCAGGGAAACTTCGAGGCGGTAAAACGCTCCCTT
CTAGAGAAGGAAGACGCTCTGAGAAAAGGGACGGGTTCGTTTCTGGTGAG
AGTCAACCTCCCGCCTAAGCCAGGTACTATCAGTGATGTCCGATGCAAAG
TACCGGTGAAATCATGACGCATGCCCTACCGAATCTTGCTTTTGAGCTTG
GATTGGGCGAGCGTGAGGTGATATTTTTGGAGGCACAACACAAGAAGATT
TTTGCCTTGAATACATGCGATTTCTGAACGCTGCATCTTCCTTGATTCGA
TGCCCCCCTGCGTGCTCCTCCGGACCCCCGAGAAAAGCGATTCTTAAGAC
CGAACGGGGGCAGATGGTGCGTGTTACCCCTCGACACGCACAGACGAACG
CAACCAGACCAGTCCTATCTGTGGATGTTCCGCGATGATGATCGCACAGG
CATCATCAATGTCAATTATCCCACGAGATCGATCTTCCCTCCTCCTTCCG
AACAAAACACAACAGAACCAACCATGGTCGGGCGACAAACCCGTTCTTGC
TGCGCCCTGAGCAACGACGACGTCATTGCATTGAGTCGATCCACACTGTC
ACTTGCAGACTGTCTACGCAACGCCCTTAGGGTGGTTGCCGTTTCGAACG
GCGATCTTTCGAACGAACACTGCGGTACTCCTGCCGCTTTCGAGGTCTTA
TGTGACTCTGTTCACCTCTGGCTGCCAACGTCTAAATTTTGGGGTGGCAG
ATGGCAGATACGATCCAACGGTTTAGAAGCAGCTCGGAGGGGAGACCACC
GACATCCGAACTCTCGGCCAGGAGAGGTTCGCAGAGAAGACGAGCGGCGG
CCAAAAGGTGTAAACTCTATCTACTATTAGTACTTTCGTCGCTTTTCACG
TCGCGGCAGGTAGTTTGTGCTCTGCGCATGATGTCACATGAGGATGGCTG
AATAACTTCTTCCTCACTGTGGGTGTATCCCGGTCGCAGCTCCTGCGGGC
CCGTGTTGCATGCGTACAACACACAGTTTCGCCCAAATTTTTGTGTGTGC
TGGTGCGCCGTACCGGCGATATCGTCGATATATCCCTTGACCATATTTTC
TCTAGAAGAACAACGAAGATTCCCTTAAGTTCCCCACCGAACCTTTTGTT
GTACGTCACATCAAGAAACGTCTAGCTGCCGAGGAGAAGTCGCGACCGTG
AGATTTGGTGTCCATCTTTCACCGTGCGAATTTCAGCTTTTGCTTCGCGA
ACGTAATTGTTCATTTGAAGGTGAAATCGTAGAACGAAACAACCCGGATA
GCTATGTACCGGTTTCTACATCACCGGGTGGTTATTTCCAACAGTTTGAA
GGTCATTTCCAAGACAGGATTACACTCTCCCAAACACCCACCCTTCTACG
ACGACTTGCCTCGCACCATATCGGCTTCAGCGCTGCGGGCGCCAAGCACT
GTCTTCGCACCGTACCGGATTTCTATTTTCCATCCGCCATCCGCATAGGA
AACGACATACGCACACCTGTTGGAGGATTTTCCTTGCTTGCTCACAACGG
CGTTTTCCATGGGTCGGCTTATGACCACTTGACCACCATGCTCGAGCTCC
AACATTTGAACCATCTTGCAAGCGTCTCCCAAGTGAGAAGCCTCTATATC
CCCTACCCGCGCGTGTTCCCCAACACGTACACCTCTTGCTCTCCGAAAAT
CTTCTTGCAGGGCGATGGTGCCCATCGAGTCAGACACCTTTCAGTGCGGT
GGGTACAACAGCGATAAGCTCAAGCGGGAAGAGACGAGGCGCCAAGACTT
GCTCGTTCACGCTAAGGGCAGGAACAACATGTTTTGTAGGCGAAAAGGGT
GAGAAACGGAGAGGGGGGGGGGAGCATAAAACCATGGAACGGAACAGAGG
GTCGTGTGGGATGCGGCGATACGCTTACAAAGAATTTAGGTAGTTACGCT
CAACCGAACTCACCACTGCCCTAACCTTTGGCCAACGTAGAAAGGAATGT
CCTCCCTCATGCAACGATTACTGCGTGACGAAAACGCCCCTGAAAAGGTC
ACTGGAAGGATTGTTACTTATCGTACTCCCACCTAACACCAACTCGTCGA
AGATAGGAGAGGCACAAAAAGCCGTCATGAGCTCGTCCATGCTAAGTTCG
TTTCAAGAGGGAAGAAGGAGGGGGTAGACATGAAACGCCCAACACCATAC
AATATATACTCCACACCACTTGATTCATCGCGATGAGCGAGCGCGCGAGC
GGCAACGTAGGGTCCGTGGGTAGGGTAGTGGTCTTGCGGTCGACTCGGAT
GTTGGCACTTCATTGATTTCTCGTTTTCTGGCGTAGTGTATTTTTCAAGA
CACACACTGTACGACATTCCGGTAGTTGTCTTCCAGGGAGAAGAGGTACA
TGACCTCTTGCCTCTAGTTTGGGCAAACCGTCCAAGTTTCTTGCTCTCCG
AGTGACAACCCGTCTGCCTGGCTACCAAAAATGGTTTTAGAGATATAGGC
AGGCGTTGAGCAACTGGCAAACAACGCGAGCATTTTTGCGTGGCATGGCT
CTCATCGTTGTTGCCACTCGCCCGGGTGCACTGCGTTCACAACTCCCAGC
GCCGTCTGCCATTGCCCCATCTTACCCAACCGCCGTCATCCCGTCTCCGC
GAACGAAAACGTCCGACGGTCGTCGCGGGCAGCTACGAGCCGGGCGATTT
TCTGAAGCACCGGTCGCCACCGCGCGGACAGAACTTCGACAGCGGCGCCG
TCAGCTGCAGAAGAGGCAGCGTCGGTGGCACCATTGGTGCCAGGAAGGGC
GGCGCCCGGTCTGCTGAGGCCACCGCCATGGCCGCCGAATCGCGCCGAAA
AGCACACCAACACTTGTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1576:10305..13423- >mRNA_E-siliculosus-1a_F_contig1576.3324.1 ID=mRNA_E-siliculosus-1a_F_contig1576.3324.1|Name=mRNA_E-siliculosus-1a_F_contig1576.3324.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1576:10305..13423- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACCACCAGGAGGCCTACCGCTACACTGTCGGCAAGATGAACCACCA
GGAGGCCTACCGCTACACTGTCGGCAAGGGAAACTTCGAGGCGGTAAAAC
GCTCCCTTCTAGAGAAGGAAGACGCTCTGAGAAAAGGGACGGGTTCGTTT
CTGGGAAACTTCGAGGCGGTAAAACGCTCCCTTCTAGAGAAGGAAGACGC
TCTGAGAAAAGGGACGGGTTCGTTTCTGATGGCAGATACGATCCAACGGT
TTAGAAGCAGCTCGGAGGGGAGACCACCGACATCCGAACTCTCGGCCAGG
AGAGGTTCGCAGAGAAGACGAGCGGCGGCCAAAAGATGGCAGATACGATC
CAACGGTTTAGAAGCAGCTCGGAGGGGAGACCACCGACATCCGAACTCTC
GGCCAGGAGAGGTTCGCAGAGAAGACGAGCGGCGGCCAAAAGGGCGATGG
TGCCCATCGAGTCAGACACCTTTCAGTGCGGTGGGTACAACAGCGATAAG
CTCAAGCGGGAAGAGACGAGGCGCCAAGACTTGCTCGTTCACGCTAAGGG
CAGGAACAACATGTTTTGTAGGCGAAAAGGGGCGATGGTGCCCATCGAGT
CAGACACCTTTCAGTGCGGTGGGTACAACAGCGATAAGCTCAAGCGGGAA
GAGACGAGGCGCCAAGACTTGCTCGTTCACGCTAAGGGCAGGAACAACAT
GTTTTGTAGGCGAAAAGGCTACGAGCCGGGCGATTTTCTGAAGCACCGGT
CGCCACCGCGCGGACAGAACTTCGACAGCGGCGCCGTCAGCTGCAGAAGA
GGCAGCGTCGGTGGCACCATTGGTGCCAGGAAGGGCGGCGCCCGGTCTGC
TGAGGCCACCGCCATGGCCGCCGAATCGCGCCGAAAAGCACACCAACACT
TGTAGCTACGAGCCGGGCGATTTTCTGAAGCACCGGTCGCCACCGCGCGG
ACAGAACTTCGACAGCGGCGCCGTCAGCTGCAGAAGAGGCAGCGTCGGTG
GCACCATTGGTGCCAGGAAGGGCGGCGCCCGGTCTGCTGAGGCCACCGCC
ATGGCCGCCGAATCGCGCCGAAAAGCACACCAACACTTGTAG back to top
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