mRNA_E-siliculosus-1a_F_contig1576.3323.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1576.3323.1 vs. uniprot
Match: D8LKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH2_ECTSI) HSP 1 Score: 652 bits (1682), Expect = 7.370e-225 Identity = 356/400 (89.00%), Postives = 363/400 (90.75%), Query Frame = 2
Query: 2 SQDRQERLVAKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERSGALGKRRGKKSASSSSRRLRRGASGINSSSRGSGTDDDRADRRHPRPTPKAVSTRTGTETTAPGALRRWCPREPCPGPAACSRRRKASTTAVAPSDLGAAXXXXXXXXVAGRSLTARGRTVAGVVMVSEGRFRARSSGGWTVGGAAVMERARPSAAAVGERGRVSSRRRWPLPRPRCRQREAAARIGGRTATATTMARAP*PASPNRTACRTWVAARLPGTQTNRSLHRDGALEERTPSGGEGALRALLAAGRTE 1201
++DRQERL+AKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERSGA GKRRGKKSASSSSRRLRRGASGINSSSRGSGTD+D AD R P+PTPKA+STRT T T A GALRRW PREPCPGPAACSRRRKASTTAVAPSDL AA VAGR LTARGRTVAG VMVS GRFRA+SSGGWT G AAV ERARPSAA VGERGRVS RRRWPLPR RC QREAAAR GGRTATATTMARAP PASPNRTACR WVA RLPGTQ NR LHR GAL ERTPS GEGALRALLAAGRTE
Sbjct: 70 AEDRQERLIAKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERSGAFGKRRGKKSASSSSRRLRRGASGINSSSRGSGTDEDPADHRPPQPTPKAISTRTETATAAAGALRRWYPREPCPGPAACSRRRKASTTAVAPSDLAAAA-------VAGRGLTARGRTVAGAVMVSGGRFRAKSSGGWTAGAAAVTERARPSAAVVGERGRVSWRRRWPLPRRRCPQREAAARTGGRTATATTMARAPWPASPNRTACRKWVATRLPGTQANRYLHRGGALAERTPSAGEGALRALLAAGRTE 462
BLAST of mRNA_E-siliculosus-1a_F_contig1576.3323.1 vs. uniprot
Match: A0A6H5JH79_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH79_9PHAE) HSP 1 Score: 306 bits (784), Expect = 4.050e-95 Identity = 164/179 (91.62%), Postives = 167/179 (93.30%), Query Frame = 2
Query: 8 DRQERLVAKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQ----DRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERSGALGKRRGKKSASSSSRRLRRGASGINSSSRG 532
DRQERL AKRRARRIVRVLYYAMKVVGV AC YTSGLNATLVYMRPDFG + LVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWF LELASFVALQT+G MA+VLNVCLREVLERSGALGKRRGKKSASSSSRRLRRGASGINSSSRG
Sbjct: 8 DRQERLAAKRRARRIVRVLYYAMKVVGVGACFYTSGLNATLVYMRPDFGRELLASSLLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFSLELASFVALQTVGVMALVLNVCLREVLERSGALGKRRGKKSASSSSRRLRRGASGINSSSRG 186
BLAST of mRNA_E-siliculosus-1a_F_contig1576.3323.1 vs. uniprot
Match: A0A835YSD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD9_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.550e-14 Identity = 73/181 (40.33%), Postives = 95/181 (52.49%), Query Frame = 2
Query: 17 ERLVAKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMA-----WLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERS--GALGKRRGKKSA-----SSSSRRLRRGASGINSS 523
E +A+RRAR V Y+ +K VA V N ++ R + L++R VR YL+ F + +LAELDT FA+ NFRALQKWW KA FYVF+ W A L R L+LA+ L + V L CLR +LE++ L K + KS SSSSRR +G S SS
Sbjct: 80 EAAIARRRARACVTYSYWVLKSTAVATHVLMITTNVWVLARRHEPDLRERAVRGYLIPFSLAALLAELDTRFARDNFRALQKWWCKALFYVFLGTVNLGWTPLGA-LGRPLT--RLQLATAGVLCALALGNVALYTCLRRLLEKTVLRKLRKAKALKSGDPTAKSSSSRRRSKGTSRHRSS 257
BLAST of mRNA_E-siliculosus-1a_F_contig1576.3323.1 vs. uniprot
Match: A0A6H5JG54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG54_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 4.110e-13 Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query: 1399 SASEVGLDFDREETGSRHPRPGANVRRGPEIQDYTPF 1509
+ASEVGLDFDREE+GSRHPR GANVRRGPEIQDYTPF
Sbjct: 30 TASEVGLDFDREESGSRHPRSGANVRRGPEIQDYTPF 66 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1576.3323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1576.3323.1 >prot_E-siliculosus-1a_F_contig1576.3323.1 ID=prot_E-siliculosus-1a_F_contig1576.3323.1|Name=mRNA_E-siliculosus-1a_F_contig1576.3323.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=504bp FAGPTGAVGREAAGEENRSCSVLRHEGGRGGGVRLHLGAQRDTRLHEARLback to top mRNA from alignment at E-siliculosus-1a_F_contig1576:1671..9436+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1576.3323.1 ID=mRNA_E-siliculosus-1a_F_contig1576.3323.1|Name=mRNA_E-siliculosus-1a_F_contig1576.3323.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7766bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1576:1671..9436+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1576:1671..9436+ >mRNA_E-siliculosus-1a_F_contig1576.3323.1 ID=mRNA_E-siliculosus-1a_F_contig1576.3323.1|Name=mRNA_E-siliculosus-1a_F_contig1576.3323.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3024bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1576:1671..9436+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |