mRNA_E-siliculosus-1a_F_contig1575.3317.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1575.3317.1
Unique NamemRNA_E-siliculosus-1a_F_contig1575.3317.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1575.3317.1 vs. uniprot
Match: D7FR91_ECTSI (Phospholipidmethyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR91_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.640e-31
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 MFREKFSKRTYAVEPIPFMNEVFVSGPYKSAKVGITSDSTFTTRHNDGPYALLPF 165
            MFR+KFSKRTYAVEPIPFMNEVFVSGP+KSAKVG TSDSTFTTRHNDGPYALLPF
Sbjct:    1 MFRQKFSKRTYAVEPIPFMNEVFVSGPFKSAKVGSTSDSTFTTRHNDGPYALLPF 55
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BLAST of mRNA_E-siliculosus-1a_F_contig1575.3317.1 vs. uniprot
Match: A0A8J2SW32_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SW32_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.710e-9
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 MFREKFSKRTYAVEPIPFMNEVFVSGPYKSAKVGITSDSTFTTRHNDGPYALLPF 165
            +FR KFSK  YA+EP+  MNE++VS P +  +    SD  F T H DGPY   PF
Sbjct:  274 LFRTKFSKAGYALEPVRGMNELYVSAPCRRDESSKNSDDVFFTEHVDGPYCFFPF 328
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1575.3317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR91_ECTSI1.640e-3194.55Phospholipidmethyltransferase n=1 Tax=Ectocarpus s... [more]
A0A8J2SW32_9STRA3.710e-949.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1575contigE-siliculosus-1a_F_contig1575:4026..4190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size165
Model size165
Exons1
Ec32 orthologEc-08_004940.1
Ec32 ortholog descriptionphospholipidmethyltransferase
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs28Q2P@1,2QWRE@2759
EggNOG free text desc.Phospholipid methyltransferase
Seed eggNOG ortholog44056.XP_009037209.1
Seed ortholog evalue1.7e-07
Seed ortholog score61.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928091.6276474-CDS-E-siliculosus-1a_F_contig1575:4025..41901622928091.6276474-CDS-E-siliculosus-1a_F_contig1575:4025..4190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1575 4026..4190 +
1696318800.7227402-CDS-E-siliculosus-1a_F_contig1575:4025..41901696318800.7227402-CDS-E-siliculosus-1a_F_contig1575:4025..4190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1575 4026..4190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1575.3317.1prot_E-siliculosus-1a_F_contig1575.3317.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1575 4026..4190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1575.3317.1

>prot_E-siliculosus-1a_F_contig1575.3317.1 ID=prot_E-siliculosus-1a_F_contig1575.3317.1|Name=mRNA_E-siliculosus-1a_F_contig1575.3317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp
MFREKFSKRTYAVEPIPFMNEVFVSGPYKSAKVGITSDSTFTTRHNDGPY
ALLPF
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mRNA from alignment at E-siliculosus-1a_F_contig1575:4026..4190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1575.3317.1 ID=mRNA_E-siliculosus-1a_F_contig1575.3317.1|Name=mRNA_E-siliculosus-1a_F_contig1575.3317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1575:4026..4190+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTCGCGAGAAGTTCTCCAAGCGCACGTACGCTGTCGAGCCCATCCC
CTTCATGAACGAGGTCTTCGTCTCCGGTCCCTACAAGTCAGCGAAGGTGG
GGATCACGTCCGACTCCACCTTCACCACTCGCCACAATGACGGGCCATAT
GCTCTGCTTCCGTTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1575:4026..4190+

>mRNA_E-siliculosus-1a_F_contig1575.3317.1 ID=mRNA_E-siliculosus-1a_F_contig1575.3317.1|Name=mRNA_E-siliculosus-1a_F_contig1575.3317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1575:4026..4190+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTCGCGAGAAGTTCTCCAAGCGCACGTACGCTGTCGAGCCCATCCC
CTTCATGAACGAGGTCTTCGTCTCCGGTCCCTACAAGTCAGCGAAGGTGG
GGATCACGTCCGACTCCACCTTCACCACTCGCCACAATGACGGGCCATAT
GCTCTGCTTCCGTTCATGTTTCGCGAGAAGTTCTCCAAGCGCACGTACGC
TGTCGAGCCCATCCCCTTCATGAACGAGGTCTTCGTCTCCGGTCCCTACA
AGTCAGCGAAGGTGGGGATCACGTCCGACTCCACCTTCACCACTCGCCAC
AATGACGGGCCATATGCTCTGCTTCCGTTC
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