mRNA_E-siliculosus-1a_F_contig15717.3308.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15717.3308.1
Unique NamemRNA_E-siliculosus-1a_F_contig15717.3308.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: A0A847BJ80_9GAMM (Succinate dehydrogenase flavoprotein subunit (Fragment) n=1 Tax=Halomonadaceae bacterium TaxID=2026746 RepID=A0A847BJ80_9GAMM)

HSP 1 Score: 601 bits (1550), Expect = 1.860e-215
Identity = 290/309 (93.85%), Postives = 298/309 (96.44%), Query Frame = 1 
Query:    1 KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            KTAVLSKVFPTRSHTVSAQGGITCAI S DPNDDWRWHMYDTVKGGDYI DQDAAEYMCSEGPKAVFELEHMGLPFSR DNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNT FLNEW+AVDLVKNA+GDVVGCIAM IETGEVVHVKSKATV+ATGGAGRIYASTTNALINTGDG+GMA+RAGFPMQDMEMWQFHPTGIYGAG LVTEGCRGEGGYL+NKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGE GDHV+LKLDHLGEEVL KRLPGI EL+K FAH
Sbjct:   33 KTAVLSKVFPTRSHTVSAQGGITCAIGSADPNDDWRWHMYDTVKGGDYITDQDAAEYMCSEGPKAVFELEHMGLPFSRFDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTTFLNEWFAVDLVKNASGDVVGCIAMNIETGEVVHVKSKATVMATGGAGRIYASTTNALINTGDGVGMALRAGFPMQDMEMWQFHPTGIYGAGVLVTEGCRGEGGYLVNKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGENGDHVYLKLDHLGEEVLNKRLPGISELAKIFAH 341
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: S2L4E5_HALAF (Succinate dehydrogenase flavoprotein subunit n=156 Tax=root TaxID=1 RepID=S2L4E5_HALAF)

HSP 1 Score: 608 bits (1568), Expect = 2.290e-215
Identity = 294/309 (95.15%), Postives = 303/309 (98.06%), Query Frame = 1 
Query:    1 KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            +TAVLSKVFPTRSHTVSAQGGITCAIAS DP+DDWRWHMYDTVKGGDYI DQDAAEYMCSEGPK+VFELEHMGLPFSR DNGRIYQRPFGGQSK++G+GGQAARTCAAADRTGHALLHTLYQNNLKNNT FLNEWYAVDLVKNANGDVVGCIA+ IETGEVVHVK+KATVLATGGAGRIYASTTNALINTGDGIGMA+RAGFPMQDMEMWQFHPTGIYGAG LVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH
Sbjct:   33 QTAVLSKVFPTRSHTVSAQGGITCAIASADPDDDWRWHMYDTVKGGDYITDQDAAEYMCSEGPKSVFELEHMGLPFSRFDNGRIYQRPFGGQSKDYGKGGQAARTCAAADRTGHALLHTLYQNNLKNNTTFLNEWYAVDLVKNANGDVVGCIALSIETGEVVHVKAKATVLATGGAGRIYASTTNALINTGDGIGMALRAGFPMQDMEMWQFHPTGIYGAGVLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 341
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: A0A109UMI6_9GAMM (Succinate dehydrogenase flavoprotein subunit n=40 Tax=Halomonadaceae TaxID=28256 RepID=A0A109UMI6_9GAMM)

HSP 1 Score: 608 bits (1568), Expect = 2.290e-215
Identity = 294/309 (95.15%), Postives = 300/309 (97.09%), Query Frame = 1 
Query:    1 KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            KTAVLSKVFPTRSHTVSAQGGITCAIAS DPNDDWRWHMYDTVKGGDYI DQDAAEYMCSEGPKAVFELEHMGLPFSR +NGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNT FLNEW+AVDLVKNA+GDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMA+RAGFPMQDMEMWQFHPTGIYGAG LVTEGCRGEGGYL+NKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGE GDHV+LKLDHLGEEVL KRLPGI ELSK FAH
Sbjct:   33 KTAVLSKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGGDYITDQDAAEYMCSEGPKAVFELEHMGLPFSRFENGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTTFLNEWFAVDLVKNADGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMALRAGFPMQDMEMWQFHPTGIYGAGVLVTEGCRGEGGYLVNKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGENGDHVYLKLDHLGEEVLNKRLPGISELSKIFAH 341
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: A0A139CB04_9GAMM (Succinate dehydrogenase flavoprotein subunit n=9 Tax=Oceanospirillales TaxID=135619 RepID=A0A139CB04_9GAMM)

HSP 1 Score: 601 bits (1550), Expect = 1.240e-212
Identity = 289/309 (93.53%), Postives = 300/309 (97.09%), Query Frame = 1 
Query:    1 KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            KTAV++KVFPTRSHTVSAQGGITCAIAS DPNDDWRWHMYDTVKGGDYI DQDAAEYMCSEGPKAVFELEHMGLPFSR DNGRIYQRPFGGQSK FG+GGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNA+GDVVGCIA+CIETGEVVH+KSKATVLATGG+GRIYASTTNALINTGDGIGMA+RAGF +QDMEMWQFHPTGIYGAG LVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGE GDHV LKLDHLGE+VL KRLPGIVEL+KTFAH
Sbjct:   33 KTAVITKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGGDYITDQDAAEYMCSEGPKAVFELEHMGLPFSRFDNGRIYQRPFGGQSKEFGKGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNASGDVVGCIALCIETGEVVHIKSKATVLATGGSGRIYASTTNALINTGDGIGMALRAGFSVQDMEMWQFHPTGIYGAGVLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGENGDHVLLKLDHLGEDVLSKRLPGIVELAKTFAH 341
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: UPI001D09E410 (succinate dehydrogenase flavoprotein subunit n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=UPI001D09E410)

HSP 1 Score: 601 bits (1549), Expect = 1.760e-212
Identity = 290/309 (93.85%), Postives = 299/309 (96.76%), Query Frame = 1 
Query:    1 KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            KTAVLSKVFPTRSHTVSAQGGITCAI S DPNDDWRWHMYDTVKG DYIADQDAAEYMC+EGPKAVFELEHMGLPFSR DNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKN+TVFLNEWYAVDLVKN  GDVVGCIA+CIETGEVVHVKSKATVLATGGAGRI++STTNALINTGDGIGMA+RAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLA RDVVARSMVME+LEGRGCGE GDHV LKLDHLGEEVL KRLPGIVEL++TFAH
Sbjct:   33 KTAVLSKVFPTRSHTVSAQGGITCAIGSADPNDDWRWHMYDTVKGSDYIADQDAAEYMCTEGPKAVFELEHMGLPFSRFDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNDTVFLNEWYAVDLVKNTKGDVVGCIALCIETGEVVHVKSKATVLATGGAGRIFSSTTNALINTGDGIGMALRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLASRDVVARSMVMEMLEGRGCGENGDHVMLKLDHLGEEVLQKRLPGIVELARTFAH 341
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: UPI0003FF3863 (succinate dehydrogenase flavoprotein subunit n=1 Tax=Halomonas halocynthiae TaxID=176290 RepID=UPI0003FF3863)

HSP 1 Score: 600 bits (1548), Expect = 2.500e-212
Identity = 291/308 (94.48%), Postives = 298/308 (96.75%), Query Frame = 1 
Query:    4 TAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            TAVLSKVFPTRSHTVSAQGGITCAIAS DPNDDWRWHMYDTVKG DYIADQDAAEY+C+EGPKAVFELEHMGLPFSR DNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLK+NT FLNEWY VDLVKNANGDVVGCIAM IETGEV H++SKATVLATGGAGRIYASTTNALINTGDG+GMA+RAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLA RDVVARSMVMEILEGRG GE GDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH
Sbjct:   34 TAVLSKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIADQDAAEYLCTEGPKAVFELEHMGLPFSRFDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKHNTTFLNEWYVVDLVKNANGDVVGCIAMDIETGEVAHIESKATVLATGGAGRIYASTTNALINTGDGVGMALRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLASRDVVARSMVMEILEGRGAGEDGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 341
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: A0A4Y4F266_9GAMM (Succinate dehydrogenase flavoprotein subunit n=8 Tax=Halomonadaceae TaxID=28256 RepID=A0A4Y4F266_9GAMM)

HSP 1 Score: 600 bits (1547), Expect = 3.550e-212
Identity = 288/309 (93.20%), Postives = 301/309 (97.41%), Query Frame = 1 
Query:    1 KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            KTAVL+KVFPTRSHTVSAQGGITCAIAS DP+DDWRWHMYDTVKGGDYI DQ+AAEYMCSEGPKAVFELEHMGLPFSR DNGRIYQRPFGGQSK+FG+GGQAARTCAAADRTGHALLHTLYQNNLKNNT FLNEWYAVDLVKNANGDVVGCIAM IETGE+VHVKSKATVLATGG+GRIY+STTNALINTGDGIGMA+RAG PMQDMEMWQFHPTGIYGAG LVTEGCRGEGGYL+NKDGERFMERYAPNAKDLAGRDVVARSMV+EILEGRGCGE GDHV+LKLDHLGEEVLGKRLPGIVEL+KTFAH
Sbjct:   33 KTAVLTKVFPTRSHTVSAQGGITCAIASSDPDDDWRWHMYDTVKGGDYITDQEAAEYMCSEGPKAVFELEHMGLPFSRFDNGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQNNLKNNTTFLNEWYAVDLVKNANGDVVGCIAMDIETGELVHVKSKATVLATGGSGRIYSSTTNALINTGDGIGMALRAGIPMQDMEMWQFHPTGIYGAGVLVTEGCRGEGGYLVNKDGERFMERYAPNAKDLAGRDVVARSMVLEILEGRGCGENGDHVYLKLDHLGEEVLGKRLPGIVELAKTFAH 341
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: A0A086D6T7_9GAMM (Succinate dehydrogenase flavoprotein subunit n=18 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A086D6T7_9GAMM)

HSP 1 Score: 600 bits (1546), Expect = 5.040e-212
Identity = 288/309 (93.20%), Postives = 301/309 (97.41%), Query Frame = 1 
Query:    1 KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            KTAVLSKVFPTRSHTVSAQGGITCAIAS DPNDDWRWHMYDTVKGGDYI DQDAAEYMC+EGPKAVFELEHMGLPFSR DNGRIYQRPFGGQSK+FG+GGQAARTCAAADRTGHALLHTLYQNNLKNNTVFL+EWYA+DLVKNANGDVVGCIA+CIETGE+VHVKSKATVLATGGAGRIYASTTNALINTGDGIGMA+RAGFP+QD+EMWQFHPTGI+GAG LVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVAR+MVME+LEGRGCGE  DHV LKLDHLGEEVL KRLPGIVELSKTFAH
Sbjct:   33 KTAVLSKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGGDYITDQDAAEYMCTEGPKAVFELEHMGLPFSRFDNGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLDEWYAIDLVKNANGDVVGCIALCIETGEIVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMALRAGFPVQDIEMWQFHPTGIHGAGCLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARAMVMEVLEGRGCGENADHVMLKLDHLGEEVLMKRLPGIVELSKTFAH 341
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BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: A0A1M7IDB9_9GAMM (Succinate dehydrogenase flavoprotein subunit n=2 Tax=Halomonas TaxID=2745 RepID=A0A1M7IDB9_9GAMM)

HSP 1 Score: 597 bits (1540), Expect = 4.110e-211
Identity = 287/309 (92.88%), Postives = 299/309 (96.76%), Query Frame = 1 
Query:    1 KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            +TAVLSKVFPTRSHTVSAQGGITCAI + DP+DDWRWHMYDTVKG DYIADQDAAEY+CSEGPKAVFELEHMGLPFSR DNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNT FLNEWYAVDLVKNA+GDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDG+GMA+RAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLA RDVV+RS+VME+L+GRG GE GDHVFLKLDHLGEEVL KRLPGI EL+KTFAH
Sbjct:   33 QTAVLSKVFPTRSHTVSAQGGITCAIGAADPDDDWRWHMYDTVKGSDYIADQDAAEYLCSEGPKAVFELEHMGLPFSRFDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTTFLNEWYAVDLVKNASGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLASRDVVSRSIVMELLDGRGAGENGDHVFLKLDHLGEEVLNKRLPGICELAKTFAH 341
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Match: A0A5C1NBJ3_9GAMM (Succinate dehydrogenase flavoprotein subunit n=1 Tax=Halomonas sp. Y2R2 TaxID=2562282 RepID=A0A5C1NBJ3_9GAMM)

HSP 1 Score: 596 bits (1536), Expect = 1.670e-210
Identity = 287/308 (93.18%), Postives = 299/308 (97.08%), Query Frame = 1 
Query:    4 TAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIADQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVGCIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRAGFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGIVELSKTFAH 927
            TAVLSKVFPTRSHTVSAQGGITCAIAS DPNDDWRWHMYDTVKGGDYI DQDAAEYMCSEGPKAVFELEHMGLPFSR DNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLY+NN+K++T FLNEWYA+DLVKNANGDVVGCIAM IETGEVVH+KSKATVLATGG+GRIYASTTNALINTGDGIGMA+RAG P+QD+EMWQFHPTGI+GAG LVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGE GDHV+LKLDHLGEEVL KRLPGIVELSKTFAH
Sbjct:   34 TAVLSKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGGDYITDQDAAEYMCSEGPKAVFELEHMGLPFSRFDNGRIYQRPFGGQSKNFGEGGQAARTCAAADRTGHALLHTLYENNVKHDTTFLNEWYAIDLVKNANGDVVGCIAMDIETGEVVHIKSKATVLATGGSGRIYASTTNALINTGDGIGMALRAGVPIQDIEMWQFHPTGIHGAGVLVTEGCRGEGGYLINKDGERFMERYAPNAKDLAGRDVVARSMVMEILEGRGCGENGDHVYLKLDHLGEEVLSKRLPGIVELSKTFAH 341
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15717.3308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847BJ80_9GAMM1.860e-21593.85Succinate dehydrogenase flavoprotein subunit (Frag... [more]
S2L4E5_HALAF2.290e-21595.15Succinate dehydrogenase flavoprotein subunit n=156... [more]
A0A109UMI6_9GAMM2.290e-21595.15Succinate dehydrogenase flavoprotein subunit n=40 ... [more]
A0A139CB04_9GAMM1.240e-21293.53Succinate dehydrogenase flavoprotein subunit n=9 T... [more]
UPI001D09E4101.760e-21293.85succinate dehydrogenase flavoprotein subunit n=2 T... [more]
UPI0003FF38632.500e-21294.48succinate dehydrogenase flavoprotein subunit n=1 T... [more]
A0A4Y4F266_9GAMM3.550e-21293.20Succinate dehydrogenase flavoprotein subunit n=8 T... [more]
A0A086D6T7_9GAMM5.040e-21293.20Succinate dehydrogenase flavoprotein subunit n=18 ... [more]
A0A1M7IDB9_9GAMM4.110e-21192.88Succinate dehydrogenase flavoprotein subunit n=2 T... [more]
A0A5C1NBJ3_9GAMM1.670e-21093.18Succinate dehydrogenase flavoprotein subunit n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15717contigE-siliculosus-1a_F_contig15717:3..929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size927
Model size927
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
BiGG ReactioniE2348C_1286.E2348C_0603,iJN746.PP_4191,iPC815.YPO1111
COG Functional cat.C
EC1.3.5.1,1.3.5.4
EggNOG OGs1MU5M@1224,1RMU2@1236,1XIK9@135619,COG1053@1,COG1053@2
EggNOG free text desc.Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily
GOsGO:0000104,GO:0000166,GO:0001539,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006113,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022607,GO:0022900,GO:0030030,GO:0030031,GO:0032991,GO:0033554,GO:0036094,GO:0040011,GO:0043167,GO:0043168,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044780,GO:0044781,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045283,GO:0045284,GO:0045333,GO:0048037,GO:0048870,GO:0050660,GO:0050662,GO:0050896,GO:0051179,GO:0051674,GO:0051716,GO:0055114,GO:0070469,GO:0070470,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0071949,GO:0071973,GO:0072350,GO:0097159,GO:0097588,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204
KEGG ModuleM00009,M00011,M00149,M00173,M00374,M00376
KEGG Pathwayko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134
KEGG ReactionR02164
KEGG koko:K00239
KEGG rclassRC00045
Preferred namesdhA
Seed eggNOG ortholog1415755.JQLV01000001_gene1641
Seed ortholog evalue8e-179
Seed ortholog score632.9
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928083.276462-CDS-E-siliculosus-1a_F_contig15717:2..9291622928083.276462-CDS-E-siliculosus-1a_F_contig15717:2..929Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15717 3..929 -
1696318799.9952228-CDS-E-siliculosus-1a_F_contig15717:2..9291696318799.9952228-CDS-E-siliculosus-1a_F_contig15717:2..929Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15717 3..929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15717.3308.1prot_E-siliculosus-1a_F_contig15717.3308.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15717 3..929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15717.3308.1

>prot_E-siliculosus-1a_F_contig15717.3308.1 ID=prot_E-siliculosus-1a_F_contig15717.3308.1|Name=mRNA_E-siliculosus-1a_F_contig15717.3308.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp
KTAVLSKVFPTRSHTVSAQGGITCAIASDDPNDDWRWHMYDTVKGGDYIA
DQDAAEYMCSEGPKAVFELEHMGLPFSRLDNGRIYQRPFGGQSKNFGEGG
QAARTCAAADRTGHALLHTLYQNNLKNNTVFLNEWYAVDLVKNANGDVVG
CIAMCIETGEVVHVKSKATVLATGGAGRIYASTTNALINTGDGIGMAMRA
GFPMQDMEMWQFHPTGIYGAGTLVTEGCRGEGGYLINKDGERFMERYAPN
AKDLAGRDVVARSMVMEILEGRGCGEKGDHVFLKLDHLGEEVLGKRLPGI
VELSKTFAH
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mRNA from alignment at E-siliculosus-1a_F_contig15717:3..929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15717.3308.1 ID=mRNA_E-siliculosus-1a_F_contig15717.3308.1|Name=mRNA_E-siliculosus-1a_F_contig15717.3308.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=927bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15717:3..929- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGACGGCCGTGTTATCGAAAGTTTTCCCGACCCGCTCTCACACCGTTTC
TGCACAGGGTGGTATTACCTGCGCAATCGCGTCCGATGATCCGAATGATG
ACTGGCGCTGGCACATGTATGACACCGTTAAAGGCGGCGATTATATCGCT
GACCAGGACGCGGCGGAGTATATGTGTTCTGAAGGCCCGAAAGCGGTATT
TGAACTTGAGCATATGGGACTACCGTTCTCGCGTTTAGATAATGGTCGCA
TTTATCAGCGTCCGTTCGGTGGCCAGTCCAAGAACTTTGGTGAAGGCGGC
CAGGCGGCGCGTACCTGTGCGGCAGCTGACCGTACCGGCCATGCGCTATT
GCACACGCTTTACCAAAACAACTTGAAGAACAACACCGTGTTCCTCAACG
AATGGTACGCGGTTGATTTGGTTAAGAATGCTAACGGTGATGTGGTCGGC
TGTATCGCCATGTGCATCGAAACAGGCGAAGTGGTACACGTTAAATCCAA
GGCGACTGTTCTAGCCACCGGTGGTGCAGGTCGTATCTATGCCTCTACTA
CTAACGCCCTGATCAATACCGGTGATGGTATCGGCATGGCGATGCGTGCA
GGCTTTCCGATGCAGGACATGGAGATGTGGCAGTTCCACCCGACCGGTAT
TTACGGGGCGGGTACGCTGGTCACTGAGGGTTGCCGCGGTGAGGGTGGCT
ATCTGATCAATAAAGATGGCGAACGCTTCATGGAGCGTTACGCGCCGAAC
GCCAAAGATTTGGCAGGCCGTGACGTCGTCGCTCGTTCAATGGTCATGGA
AATTCTGGAAGGCCGTGGCTGTGGCGAGAAGGGCGATCACGTCTTCCTGA
AGCTTGATCATTTGGGTGAAGAGGTTCTTGGCAAGCGTCTGCCGGGTATC
GTCGAACTATCCAAAACCTTTGCCCAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15717:3..929-

>mRNA_E-siliculosus-1a_F_contig15717.3308.1 ID=mRNA_E-siliculosus-1a_F_contig15717.3308.1|Name=mRNA_E-siliculosus-1a_F_contig15717.3308.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15717:3..929- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGACGGCCGTGTTATCGAAAGTTTTCCCGACCCGCTCTCACACCGTTTC
TGCACAGGGTGGTATTACCTGCGCAATCGCGTCCGATGATCCGAATGATG
ACTGGCGCTGGCACATGTATGACACCGTTAAAGGCGGCGATTATATCGCT
GACCAGGACGCGGCGGAGTATATGTGTTCTGAAGGCCCGAAAGCGGTATT
TGAACTTGAGCATATGGGACTACCGTTCTCGCGTTTAGATAATGGTCGCA
TTTATCAGCGTCCGTTCGGTGGCCAGTCCAAGAACTTTGGTGAAGGCGGC
CAGGCGGCGCGTACCTGTGCGGCAGCTGACCGTACCGGCCATGCGCTATT
GCACACGCTTTACCAAAACAACTTGAAGAACAACACCGTGTTCCTCAACG
AATGGTACGCGGTTGATTTGGTTAAGAATGCTAACGGTGATGTGGTCGGC
TGTATCGCCATGTGCATCGAAACAGGCGAAGTGGTACACGTTAAATCCAA
GGCGACTGTTCTAGCCACCGGTGGTGCAGGTCGTATCTATGCCTCTACTA
CTAACGCCCTGATCAATACCGGTGATGGTATCGGCATGGCGATGCGTGCA
GGCTTTCCGATGCAGGACATGGAGATGTGGCAGTTCCACCCGACCGGTAT
TTACGGGGCGGGTACGCTGGTCACTGAGGGTTGCCGCGGTGAGGGTGGCT
ATCTGATCAATAAAGATGGCGAACGCTTCATGGAGCGTTACGCGCCGAAC
GCCAAAGATTTGGCAGGCCGTGACGTCGTCGCTCGTTCAATGGTCATGGA
AATTCTGGAAGGCCGTGGCTGTGGCGAGAAGGGCGATCACGTCTTCCTGA
AGCTTGATCATTTGGGTGAAGAGGTTCTTGGCAAGCGTCTGCCGGGTATC
GTCGAACTATCCAAAACCTTTGCCCATAAGACGGCCGTGTTATCGAAAGT
TTTCCCGACCCGCTCTCACACCGTTTCTGCACAGGGTGGTATTACCTGCG
CAATCGCGTCCGATGATCCGAATGATGACTGGCGCTGGCACATGTATGAC
ACCGTTAAAGGCGGCGATTATATCGCTGACCAGGACGCGGCGGAGTATAT
GTGTTCTGAAGGCCCGAAAGCGGTATTTGAACTTGAGCATATGGGACTAC
CGTTCTCGCGTTTAGATAATGGTCGCATTTATCAGCGTCCGTTCGGTGGC
CAGTCCAAGAACTTTGGTGAAGGCGGCCAGGCGGCGCGTACCTGTGCGGC
AGCTGACCGTACCGGCCATGCGCTATTGCACACGCTTTACCAAAACAACT
TGAAGAACAACACCGTGTTCCTCAACGAATGGTACGCGGTTGATTTGGTT
AAGAATGCTAACGGTGATGTGGTCGGCTGTATCGCCATGTGCATCGAAAC
AGGCGAAGTGGTACACGTTAAATCCAAGGCGACTGTTCTAGCCACCGGTG
GTGCAGGTCGTATCTATGCCTCTACTACTAACGCCCTGATCAATACCGGT
GATGGTATCGGCATGGCGATGCGTGCAGGCTTTCCGATGCAGGACATGGA
GATGTGGCAGTTCCACCCGACCGGTATTTACGGGGCGGGTACGCTGGTCA
CTGAGGGTTGCCGCGGTGAGGGTGGCTATCTGATCAATAAAGATGGCGAA
CGCTTCATGGAGCGTTACGCGCCGAACGCCAAAGATTTGGCAGGCCGTGA
CGTCGTCGCTCGTTCAATGGTCATGGAAATTCTGGAAGGCCGTGGCTGTG
GCGAGAAGGGCGATCACGTCTTCCTGAAGCTTGATCATTTGGGTGAAGAG
GTTCTTGGCAAGCGTCTGCCGGGTATCGTCGAACTATCCAAAACCTTTGC
CCAT
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