mRNA_E-siliculosus-1a_F_contig157.3294.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig157.3294.1
Unique NamemRNA_E-siliculosus-1a_F_contig157.3294.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig157.3294.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 475 bits (1223), Expect = 6.030e-168
Identity = 226/239 (94.56%), Postives = 228/239 (95.40%), Query Frame = 1 
Query:  142 TTAVQVRGHLQQQSAQTDINEDVTFTVQVNAVYSGDVDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDEKADLEAGCDECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCEATDNCDGACDDIQECLQYARNDKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRSCR 858
            TT V  RG    +SAQTDINEDVTFTVQVNAVYSGDVDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDEKADLEAGC ECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCEAT+NCDGACDD QECLQYARN KYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKR CR
Sbjct:   48 TTTVVFRGTALSKSAQTDINEDVTFTVQVNAVYSGDVDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDEKADLEAGCGECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCEATENCDGACDDTQECLQYARNGKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRRCR 286
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig157.3294.1 vs. uniprot
Match: W2QDR7_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QDR7_PHYPN)

HSP 1 Score: 64.3 bits (155), Expect = 2.750e-9
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:  487 CDVSCGEFQECLLYE-DGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASC 660
            C + CG+FQEC +YE DG +   YCAD C +  RC     C L EV CIRAPCPP+A+C
Sbjct:   74 CTMECGDFQECRIYEPDGSD---YCADVCAEG-RCPKGSICELQEVQCIRAPCPPMATC 128
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig157.3294.1 vs. uniprot
Match: A0A329SZI3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SZI3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.790e-9
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  475 GCDECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASC 660
            G   C + CG+FQEC +YE   +   YCAD C +  RC +  TC L EV CIRAPCPPVA+C
Sbjct:  640 GSPTCTMECGDFQECRIYEP--DDSEYCADVCAEG-RCPEGFTCELQEVQCIRAPCPPVATC 698
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig157.3294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCN7_ECTSI6.030e-16894.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W2QDR7_PHYPN2.750e-954.24Uncharacterized protein n=14 Tax=Phytophthora para... [more]
A0A329SZI3_9STRA4.790e-953.23Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig157contigE-siliculosus-1a_F_contig157:10469..13986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size861
Model size863
Exons4
Ec32 orthologEc-03_002200.1
Ec32 ortholog descriptionTissue inhibitor of metalloproteinases-like, OB-fold
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2D2W6@1,2SP8K@2759
Seed eggNOG ortholog2880.D8LCN7
Seed ortholog evalue6.8e-132
Seed ortholog score476.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig157.3294.1prot_E-siliculosus-1a_F_contig157.3294.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig157 10469..13986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.3111355-CDS-E-siliculosus-1a_F_contig157:10468..106471622928081.3111355-CDS-E-siliculosus-1a_F_contig157:10468..10647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 10469..10647 +
1696318798.8635752-CDS-E-siliculosus-1a_F_contig157:10468..106471696318798.8635752-CDS-E-siliculosus-1a_F_contig157:10468..10647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 10469..10647 +
1622928081.3253605-CDS-E-siliculosus-1a_F_contig157:11874..122081622928081.3253605-CDS-E-siliculosus-1a_F_contig157:11874..12208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 11875..12208 +
1696318798.8748338-CDS-E-siliculosus-1a_F_contig157:11874..122081696318798.8748338-CDS-E-siliculosus-1a_F_contig157:11874..12208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 11875..12208 +
1622928081.336621-CDS-E-siliculosus-1a_F_contig157:12900..130891622928081.336621-CDS-E-siliculosus-1a_F_contig157:12900..13089Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 12901..13089 +
1696318798.88435-CDS-E-siliculosus-1a_F_contig157:12900..130891696318798.88435-CDS-E-siliculosus-1a_F_contig157:12900..13089Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 12901..13089 +
1622928081.3520215-CDS-E-siliculosus-1a_F_contig157:13827..139861622928081.3520215-CDS-E-siliculosus-1a_F_contig157:13827..13986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 13828..13986 +
1696318798.89331-CDS-E-siliculosus-1a_F_contig157:13827..139861696318798.89331-CDS-E-siliculosus-1a_F_contig157:13827..13986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 13828..13986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig157.3294.1

>prot_E-siliculosus-1a_F_contig157.3294.1 ID=prot_E-siliculosus-1a_F_contig157.3294.1|Name=mRNA_E-siliculosus-1a_F_contig157.3294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=287bp
GPQHDTHSFRSARVRPFVAQPSLARLRVHMSRPVHHALRICPGDLDYTTA
VQVRGHLQQQSAQTDINEDVTFTVQVNAVYSGDVDGQDEISFVTGGNSAI
CGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPD
DEKADLEAGCDECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNE
TCVLTEVACIRAPCPPVASCEATDNCDGACDDIQECLQYARNDKYYCSDT
CDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRSCR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig157:10469..13986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig157.3294.1 ID=mRNA_E-siliculosus-1a_F_contig157.3294.1|Name=mRNA_E-siliculosus-1a_F_contig157.3294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3518bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig157:10469..13986+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCCCCAGCACGACACACATAGCTTTCGCAGCGCTCGGGTACGCCCTTT
TGTTGCTCAACCAAGCCTTGCACGCCTCCGCGTGCACATGTCTCGCCCAG
TACATCACGCCCTGCGAATATGCCCAGGGGATCTAGACTACACGACCGCT
GTCCAAGTGAGAGGACACTTACAGCAGCAGTAGACGACTGTAGCTCTTCC
AAGCTCTTCGGGTAACATCAGTATTGTTTCGTCGCAAAAACGTATTAGTG
CAGGACTGGCCATGTTGCCTCCTGCGTGAGCGTGTGTGTTGCGACCGCAA
ACTCAGAAAAATTACTCTGTACATATCTCGACTGAGAGTACCGCACGCGG
CACTCTTGTGTACCACAACCCCCAGCTCGTCACGGGAAATGTGACAGCAG
ACGCGGTGACGAGGAAAAACATGTGAAGAAACGGTGCAGCTTATATTGTT
GTGTAGTCCTGCAAACGAACGTCTTTCTACAGAACGCCGGGATGCGGACG
CCCCGGTCCTCTCTAGGCTTTCGCTGTGTTGTCGCTTCTTCTACTGGTAC
GCGCATTGACGCGTTCCCCAAGTCATCAATCAAATTGTTTACCCTGCTAA
TTTCTTCCGTTCGCATGTGCCTACCCGTACTTCCCTCCTGTGTCTGTGTC
ATTCTCTCCGACCTACCCACGACATGTATGTGATGACCCTTTGCTCGTGG
ACATATATTGCTGTAGCACCGCAGGGTTTTTGGTTCAAGGTCCTGGGACA
GCGCCGAACACACACCAGAAGCAGCTTGCGACCACACATCAGTCAGTACA
TTGTTCACCCGCATTGCTTGATTTAGCCGCTCTCTCACAGGTTTGTTTTG
GCCCAGGATCCACTTTCCTTCTGGAAAATATGCATACCAACAAGTTGCGT
TGCGTATTACTCACTGTCATTGCGCGGACGCATCGCGTCTCTGTCTTACC
CATCCCTATGTACGATTGGAATCAATCTCTGTGGCGCTGCCGCCGAGTAC
TTCGAAGTATGTTTCAACACCGATGCTAGAAATTGTTTACTCTCCGAAGT
AGTTATTCCAGGTCAAACCAGGAACTGACCTTAAGAAATACGTGAAGTCC
AAACCATTAAAAGCAAACGAGTTACGCCAGTACCCTCAACTCTGGGTGAG
CGCAGAGTCTGGACTGTGGTGGCTAGTTCCGTGTGTCTGTTCGTCCTGAA
TATTCGATATCCTGACCTCCGCAAGCAAGTGTAAGTAGTTTTTACACGTG
TTCTCTCATAAATACTTCCGGCGTTCTCCGCGTTCACCTGCTTTAGGTCG
CCCATCAACGTATCGCCAAAAACGTTTATGGCATTTTTCTTGATACACGT
AAAGGTTTTTTGCGAGACCAACAAAATCAATTCACCGTCTGCTTCCACAC
CTTCAGGTCTGCGCAGACGGACATCAACGAAGACGTCACCTTCACCGTCC
AGGTTAACGCTGTCTACAGCGGTGACGTCGACGGCCAAGACGAGATCAGC
TTTGTCACCGGAGGCAACAGCGCCATTTGCGGCGTCGACCTCACCATCGG
AGAGGAGTACCTCCTCGGCCTCTACCCGGCCGGGGACGACCCGTTCGATT
CTACCGGCGGCGGCACGGCCGGCCAGCTGACGGTGGGCCTGTGCGATCTG
GCGCGTGTCTGGAGCGATGTCCCGGATGACGAGAAGGCCGACCTGGAAGC
CGGGTGCGACGAATGCGACGTGTCTTGCGGCGAGTTTCAGGTATGTGATC
ATCCTGCCGGGATTGGCAAATGCCTGCGTCTTTTTTATTGTTACCATCGA
CCGCGCTAACCGGCTGACCAATGAAAATACGTGCCTGTGTCTGTAGATGT
GTGACCGAGATGATGCGCGCTGGGGGCATATCCATATGGCGGGGCAAGGC
ACGCCGTTTTTGGTTTCATCCTGGAGTTTCACTCTCGTATGTACATGCAC
CGTTGACACCAATCGCTAGGTTCGCGCTCTAACCTTTATGTGTAGAACGT
GTCGGCGGTGCATGTATATTTCGTGTTGATGTTGCCGTTGTACCTGACAC
CGCGCCATCGGCCCGAGAGTGGTATTCCTTGCACTTGCGCGTACGTGTAC
CAATATGCGGGAACAGACTGCGGAGGACGGCGTCCTTTGGTTTTGACCGT
GCAGACTGAAGCTCGACGATGTACGCTTTGGTGACAGTCTTGGCGCCGGT
TCTCCCTGCGATGCATGCATGCTCGGCTGCACAGGCGCACGAAACGACTG
CTGTAGTTCGAATTTCGCTCCATCGTTGCATAATCCCCGGAAATCCAACT
AAACGTCCCCTGTGGCATCCTTGAAAGTTTCGCCGAGACGAAAAAACAGA
CGGCGTTTGTCGCAACACCGCTACGCATGAACTCATGCAAGACCTAGCCC
GTAACATTTAGTGGACCCGACCGACGCTACAGGAATGCCTGCTGTACGAA
GACGGACTGGAATCGGAGTACTACTGCGCGGACACCTGCGACGACCCGGA
CCGGTGTGCGGACAACGAGACGTGCGTTCTGACCGAGGTTGCGTGCATCC
GGGCACCGTGCCCGCCCGTGGCATCTTGCGAAGCGACCGACAACTGCGAT
GGAGCCTGTGATGACATTCAGGTTCGTGCTTTTTCTTTTTCGCCCGTCGC
GGTTGAGGAAGAACAGATGAACACAAACCACACGGTTCTCATGGTCACGT
TTGGTGCTCAAGTGGTTAATTGTCTTGCGGGGGGGGGGCGTCCCGTCGCA
ACCACGGCCGTTTGAGGAGTGGCCGTGTGCTGTCGCGAAGGAAGACGAAA
AATGCAGTGGATTCCACATATATTGCACGTAGACATAGCTACGCCTATTC
CTAGAGGGATCTACAGCAGTGGCATCCCCCACCTCCTCTTAATGGTTAGG
AAGAAATAGTCGGGAGGGACTCGTGGAGGTGTTCAATAGGACCGTCATCC
GAAGGTTATGTGGAGAATTCATGTATCGGAACTTGATTCCGCCTGCTCAT
CACCAGTGACAGGCGACCGCTCAACGTCTTTTCACATCGATACCGTTCAC
TCCTCACGCACCGACAAGATCTATTTTCGCGCCGGCAGTGGCGAACTATT
TTTTGTCATCTGGACGGCAGAGTCCGCTGATTGTTGAATCACGACCCAAT
AGAGCGATTAAGACACGCGCATGCTCCTTTGCGTGGGGCGGGCAAGACGT
CGGCTGCGTTGCTACCATGATCCCGAAGCAGGGTTGCTTTGGGGGAAGAG
GGCACAACGTGCCTGGTCCTATTCACTTTCGCGATGGTAGCGTCTGGTCC
GACTGCTTCTGATCGCGCTTGAGCGTGCCAAACATCTGTGTGCGATATCA
CCCTTTCAGGAGTGCCTCCAGTATGCCAGAAACGACAAGTACTACTGCTC
CGACACCTGCGACAGCCCGGCCGCGTGTGAGGAGGGAGAGGAGTGTTCCA
CCCGGCCTCGGAAGTGGTGCCGCAGCAGCGGCTACGACGGCTGTCCCGAG
AAGCGCAGCTGTCGCTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig157:10469..13986+

>mRNA_E-siliculosus-1a_F_contig157.3294.1 ID=mRNA_E-siliculosus-1a_F_contig157.3294.1|Name=mRNA_E-siliculosus-1a_F_contig157.3294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1722bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig157:10469..13986+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCCCCAGCACGACACACATAGCTTTCGCAGCGCTCGGGTACGCCCTTT
TGTTGCTCAACCAAGCCTTGCACGCCTCCGCGTGCACATGTCTCGCCCAG
TACATCACGCCCTGCGAATATGCCCAGGGGATCTAGACTACACGACCGCT
GTCCAAGTGAGAGGACACTTACAGCAGCAGGCCCCCAGCACGACACACAT
AGCTTTCGCAGCGCTCGGGTACGCCCTTTTGTTGCTCAACCAAGCCTTGC
ACGCCTCCGCGTGCACATGTCTCGCCCAGTACATCACGCCCTGCGAATAT
GCCCAGGGGATCTAGACTACACGACCGCTGTCCAAGTGAGAGGACACTTA
CAGCAGCAGTCTGCGCAGACGGACATCAACGAAGACGTCACCTTCACCGT
CCAGGTTAACGCTGTCTACAGCGGTGACGTCGACGGCCAAGACGAGATCA
GCTTTGTCACCGGAGGCAACAGCGCCATTTGCGGCGTCGACCTCACCATC
GGAGAGGAGTACCTCCTCGGCCTCTACCCGGCCGGGGACGACCCGTTCGA
TTCTACCGGCGGCGGCACGGCCGGCCAGCTGACGGTGGGCCTGTGCGATC
TGGCGCGTGTCTGGAGCGATGTCCCGGATGACGAGAAGGCCGACCTGGAA
GCCGGGTGCGACGAATGCGACGTGTCTTGCGGCGAGTTTCAGGTCTGCGC
AGACGGACATCAACGAAGACGTCACCTTCACCGTCCAGGTTAACGCTGTC
TACAGCGGTGACGTCGACGGCCAAGACGAGATCAGCTTTGTCACCGGAGG
CAACAGCGCCATTTGCGGCGTCGACCTCACCATCGGAGAGGAGTACCTCC
TCGGCCTCTACCCGGCCGGGGACGACCCGTTCGATTCTACCGGCGGCGGC
ACGGCCGGCCAGCTGACGGTGGGCCTGTGCGATCTGGCGCGTGTCTGGAG
CGATGTCCCGGATGACGAGAAGGCCGACCTGGAAGCCGGGTGCGACGAAT
GCGACGTGTCTTGCGGCGAGTTTCAGGAATGCCTGCTGTACGAAGACGGA
CTGGAATCGGAGTACTACTGCGCGGACACCTGCGACGACCCGGACCGGTG
TGCGGACAACGAGACGTGCGTTCTGACCGAGGTTGCGTGCATCCGGGCAC
CGTGCCCGCCCGTGGCATCTTGCGAAGCGACCGACAACTGCGATGGAGCC
TGTGATGACATTCAGGAATGCCTGCTGTACGAAGACGGACTGGAATCGGA
GTACTACTGCGCGGACACCTGCGACGACCCGGACCGGTGTGCGGACAACG
AGACGTGCGTTCTGACCGAGGTTGCGTGCATCCGGGCACCGTGCCCGCCC
GTGGCATCTTGCGAAGCGACCGACAACTGCGATGGAGCCTGTGATGACAT
TCAGGAGTGCCTCCAGTATGCCAGAAACGACAAGTACTACTGCTCCGACA
CCTGCGACAGCCCGGCCGCGTGTGAGGAGGGAGAGGAGTGTTCCACCCGG
CCTCGGAAGTGGTGCCGCAGCAGCGGCTACGACGGCTGTCCCGAGAAGCG
CAGCTGTCGCTAAGAGTGCCTCCAGTATGCCAGAAACGACAAGTACTACT
GCTCCGACACCTGCGACAGCCCGGCCGCGTGTGAGGAGGGAGAGGAGTGT
TCCACCCGGCCTCGGAAGTGGTGCCGCAGCAGCGGCTACGACGGCTGTCC
CGAGAAGCGCAGCTGTCGCTAA
back to top