mRNA_E-siliculosus-1a_F_contig1568.3285.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: D7G8A6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A6_ECTSI) HSP 1 Score: 226 bits (575), Expect = 1.740e-67 Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1
Query: 16 DTLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQLISGSWDGTAKVWDVAGGVCMVTLGGHENGVCVLGLPDG 336
+TLADHNHWVVSLA LPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQLISGSWDGTAKVWDVAGGVC+ TLGGHENGVCVLGLPDG
Sbjct: 62 ETLADHNHWVVSLAALPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQLISGSWDGTAKVWDVAGGVCVFTLGGHENGVCVLGLPDG 168
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: A0A8K1C6K2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6K2_PYTOL) HSP 1 Score: 142 bits (359), Expect = 2.920e-37 Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 7 LSTDTLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQ-LISGSWDGTAKVWDVAGGVCMVTLGGHENGVCVLGLPDG 336
L T T+ H HWV +LA LPP ++ CP GG VTGC+DK VRVYD +G +L+GHEGGVIS +TA + L+SGSWDGTA+VWD+A C+ L GHENGVCVLGLP+G
Sbjct: 56 LPTATIYGHEHWVTALAKLPPNVLATCPSGGFVTGCMDKAVRVYDLEGNLISILRGHEGGVISLGFTADYKYLLSGSWDGTARVWDLATMQCVHVLEGHENGVCVLGLPNG 166
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: D8LHS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS1_ECTSI) HSP 1 Score: 132 bits (331), Expect = 4.950e-36 Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 16 DTLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQ 219
DT AD NHWVVSLA L PGIVPECPQGGLVTGCLDKL+RVYDHQGKQQRMLQGH+GGVI FSWTAA Q
Sbjct: 177 DTFADDNHWVVSLAALLPGIVPECPQGGLVTGCLDKLIRVYDHQGKQQRMLQGHDGGVIYFSWTAADQ 244
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: K3WWM9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWM9_GLOUD) HSP 1 Score: 134 bits (338), Expect = 2.120e-34 Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 1 LSLSTDTLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQ-LISGSWDGTAKVWDVAGGVCMVTLGGHENGVCVLGLPDG 336
+SL + T+ DH HWV + +P G+VPECP GG TG +DK +RVY G + +L GHEGGV S + + G+ L+SGSWDGTA+VWDV C+ L HENGVCV+GLP+G
Sbjct: 60 VSLESATIYDHEHWVTATLPIPAGVVPECPAGGFATGSMDKKIRVYSGDGARVAVLTGHEGGVTSLALSGCGKYLLSGSWDGTARVWDVQSKACVHVLPDHENGVCVIGLPNG 172
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: A0A836CND0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND0_9STRA) HSP 1 Score: 134 bits (336), Expect = 4.020e-34 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 19 TLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQ-LISGSWDGTAKVWD-VAGGVCMVTLGGHENGVCVLGLPDG 336
TL +H HWV S+ LPP ++PE +GG+VTG LD L+R+++ G R L+GHE GVIS W A G+ L+SGSWDGTA+VWD AG C + L GHENGVCVLGL +G
Sbjct: 59 TLKEHTHWVTSVVELPPNLLPEAMEGGIVTGSLDSLIRIFNKTGVPLRCLEGHEKGVISLRWEAGGKRLLSGSWDGTARVWDFTAGCACTLVLPGHENGVCVLGLSNG 166
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: A0A7S3HMP6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMP6_9STRA) HSP 1 Score: 124 bits (311), Expect = 9.750e-31 Identity = 61/116 (52.59%), Postives = 78/116 (67.24%), Query Frame = 1
Query: 10 STDTLAD------HNHWVVSLAVLPPGIVPEC-PQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQLISGSWDGTAKVWDVAGGVCMVTLGGHENGVCVLGLPDG 336
STD++ + H+HWV +L L P I E P+G +++GC D +R++ G Q L GH GVISFSWT GQLISGSWDGTAK+WD+A C++TLG HENGV VLGL +G
Sbjct: 49 STDSVEELGTGVPHDHWVTALTYLSPDISRETLPEGCIISGCQDSKIRIFTFDGVLQHTLAGHGKGVISFSWTLNGQLISGSWDGTAKIWDLAALACVMTLGPHENGVQVLGLTNG 164
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: A0A482UP27_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UP27_9ARCH) HSP 1 Score: 113 bits (283), Expect = 7.110e-29 Identity = 55/107 (51.40%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 28 DHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDH----QGKQQRMLQGHEGGVISFSWTAAGQLISGSWDGTAKVWDVAGGVCMVTLGGHENGVCVLGLPDG 336
+H V +L +P PQGG+ +GC DK +R++ Q Q +L GH GGV+S SWTA G+L+SGSWDGTA+VWDVA G C+ L GHENG CV+GLP+G
Sbjct: 95 EHGGAVRALTRIPAS--SAFPQGGVASGCADKCIRLFTMDDTLQLTQHSVLTGHTGGVLSLSWTADGKLLSGSWDGTARVWDVASGTCVHVLEGHENGTCVVGLPNG 199
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: A0A662XME6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XME6_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.590e-28 Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 1 LSLSTDTLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQ-LISGSWDGTAKVWDVAGGVCMVTLGGHENGVCVLGLPDG 336
++L + T+ DH HWV + LP G G TG +DK VRV+D QG++ L+GHEGGVIS + + G+ L+SGSWDGTA+VWD+ C+ L GHENGVCVL LPDG
Sbjct: 71 MALESATVFDHEHWVTASVALPTG--------GFATGSMDKCVRVFDAQGQRLTTLRGHEGGVISLAVSVDGRRLLSGSWDGTARVWDLETQQCLHVLPGHENGVCVLELPDG 175
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: G4Z902_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4Z902_PHYSP) HSP 1 Score: 115 bits (288), Expect = 1.240e-27 Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 1 LSLSTDTLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQLI-SGSWDGTAKVWDVAGGVCMVTLGGHENGVCVLGLPDG 336
+++ + T+ DH HWV + L G G TG +DK +R++D QG++ +L+GHEGGVIS + +A G+L+ SGSWDGTA+VW + C+ L GHENGVCVLGLPDG
Sbjct: 53 VAMESATIFDHEHWVTASVALDGG--------GFATGSMDKNIRLFDAQGQRYALLRGHEGGVISLTTSADGKLLLSGSWDGTARVWSLETQQCLHVLSGHENGVCVLGLPDG 157
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Match: A0A3F2RGZ7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGZ7_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.240e-27 Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 1 LSLSTDTLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQLI-SGSWDGTAKVWDVAGGVCMVTLGGHENGVCVLGLPDG 336
+++ + T+ DH HWV + L GG TG +DK +R++D QG++ +L+GHEGGVIS S + G+L+ SGSWDGTA+VW ++ C+ L GHENGVCVLGLPDG
Sbjct: 53 VAMESATIFDHEHWVTASVALS--------SGGFATGSMDKRIRLFDAQGQRVAILEGHEGGVISLSTSVDGKLLLSGSWDGTARVWGLSTRQCLHVLRGHENGVCVLGLPDG 157 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1568.3285.1 >prot_E-siliculosus-1a_F_contig1568.3285.1 ID=prot_E-siliculosus-1a_F_contig1568.3285.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3285.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=112bp LSLSTDTLADHNHWVVSLAVLPPGIVPECPQGGLVTGCLDKLVRVYDHQGback to top mRNA from alignment at E-siliculosus-1a_F_contig1568:29387..30372+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1568.3285.1 ID=mRNA_E-siliculosus-1a_F_contig1568.3285.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3285.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=986bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1568:29387..30372+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1568:29387..30372+ >mRNA_E-siliculosus-1a_F_contig1568.3285.1 ID=mRNA_E-siliculosus-1a_F_contig1568.3285.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3285.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1568:29387..30372+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |