mRNA_E-siliculosus-1a_F_contig1568.3282.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1568.3282.1
Unique NamemRNA_E-siliculosus-1a_F_contig1568.3282.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1568.3282.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.240e-32
Identity = 71/76 (93.42%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:  169 SVVRPAAHTDSFAAVLECLATVLRHLAAGSAVTGAVSAVARGEAIEAAGLGLCRRLTRDKMDDIHAQLHPSAGSAS 396
            S V  AAHTDSFAAVLECLA VLRHLAAGSAVTGAVSAVARGEAIEA GLGLCRRLTRDKMDDIHAQLHPSAGSAS
Sbjct:  149 SPVLAAAHTDSFAAVLECLAAVLRHLAAGSAVTGAVSAVARGEAIEATGLGLCRRLTRDKMDDIHAQLHPSAGSAS 224
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BLAST of mRNA_E-siliculosus-1a_F_contig1568.3282.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.640e-25
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 2 
Query:    2 GTGGCDRHREALLEAAGKGEAPGLLGEYLRGSPQLNDLLHLWDLDQRKVGSDPQRCLSYD 181
            GT GC RHREALL+AA KGEAPGLLGEYLRGSPQLNDLLHLWDLDQRKV S+P RCL YD
Sbjct:   91 GTSGCGRHREALLQAAEKGEAPGLLGEYLRGSPQLNDLLHLWDLDQRKVVSNPPRCLPYD 150
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8A9_ECTSI1.240e-3293.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K182_9PHAE1.640e-2586.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1568contigE-siliculosus-1a_F_contig1568:6486..7929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size450
Model size453
Exons3
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.5.1.54,3.6.1.52
EggNOG OGsKOG1791@1,KOG1791@2759
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
KEGG ModuleM00022
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ReactionR01826
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG rclassRC00435
Preferred nameURB1
Seed eggNOG ortholog2880.D7G8A9
Seed ortholog evalue3.7e-28
Seed ortholog score131.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1568.3282.1prot_E-siliculosus-1a_F_contig1568.3282.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1568 6488..7929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.2537966-CDS-E-siliculosus-1a_F_contig1568:6487..66081622928079.2537966-CDS-E-siliculosus-1a_F_contig1568:6487..6608Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 6488..6608 -
1696318798.0177577-CDS-E-siliculosus-1a_F_contig1568:6487..66081696318798.0177577-CDS-E-siliculosus-1a_F_contig1568:6487..6608Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 6488..6608 -
1622928079.267792-CDS-E-siliculosus-1a_F_contig1568:7250..73981622928079.267792-CDS-E-siliculosus-1a_F_contig1568:7250..7398Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 7251..7398 -
1696318798.027541-CDS-E-siliculosus-1a_F_contig1568:7250..73981696318798.027541-CDS-E-siliculosus-1a_F_contig1568:7250..7398Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 7251..7398 -
1622928079.2815745-CDS-E-siliculosus-1a_F_contig1568:7748..79291622928079.2815745-CDS-E-siliculosus-1a_F_contig1568:7748..7929Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 7749..7929 -
1696318798.0350032-CDS-E-siliculosus-1a_F_contig1568:7748..79291696318798.0350032-CDS-E-siliculosus-1a_F_contig1568:7748..7929Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 7749..7929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1568.3282.1

>prot_E-siliculosus-1a_F_contig1568.3282.1 ID=prot_E-siliculosus-1a_F_contig1568.3282.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3282.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=150bp
GHRRLRPAQRSLARGRREGRSTRAAGRVPARVASAERSLAPVGSGSTQGR
QRSSAVSVVRPAAHTDSFAAVLECLATVLRHLAAGSAVTGAVSAVARGEA
IEAAGLGLCRRLTRDKMDDIHAQLHPSAGSASSSGGGGGSSKKAKKKKTK
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mRNA from alignment at E-siliculosus-1a_F_contig1568:6486..7929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1568.3282.1 ID=mRNA_E-siliculosus-1a_F_contig1568.3282.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3282.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1568:6486..7929- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCACCGGCGGTTGCGACCGGCACAGAGAAGCCTTGCTCGAGGCCGCCG
GGAAGGGCGAAGCACCCGGGCTGCTGGGCGAGTACCTGCGCGGGTCGCCT
CAGCTGAACGATCTCTTGCACCTGTGGGATCTGGATCAACGCAAGGTCGG
CAGCGATCCTCAGCGGTGTCTGTCGTACGACGCGGCGCAACTTGCTTTCT
GCTGTGTTGGCGCTTGAGTCTCACTAGCAATACCCAGTGCAAACATGATT
CATTAGCGTGTTACAGCAGACACGTGCCGCAGGAACCCCTCGCACGTATA
GCCCCAAGGTTCGACATGTGACGCCAAGAGCGTTCTAGACACACCGTAAG
GGTAGATTTGGTTTGTACTGTTTCTGTACGAAGAAAAAAGTGGCGCAGTA
GATACGTATTTCGACTGTATCCCAACCCCGAGAGTTATTATCAGTAGGCA
CGACACCCCCTTCCCATCGACCACCCCCCCTCCCACCGCGCGCGAACTCC
CGGCCACGCTGTCAGTCCTCTCCCGTTCTAGCCGCCGCCCACACGGACTC
CTTCGCAGCCGTCCTTGAATGCCTCGCGACCGTGCTGCGACACCTGGCCG
CGGGCTCGGCGGTAACGGGCGCCGTGTCGGCTGTGGCCCGGGGGGAGGCT
ATCGAGGCGGCCGGCTTGGGTCTGTGCAGGTACGCAGCAGTATGACTCGA
TTCTTCCGGTTCACTCGGGGAGGAAGGTGGATAGGTACGGTAGGTGACGT
TAGATACCACACACCCCGGACGCCCATTTTGCTACACGACCAAGAGGATG
TACGCAAGGCCCTCGCACACAGGTGTGTAGAGAGGTGCACAGCATCATCA
TCATCAATGGTGGTGCGCAGGGGGGGCGAGCGTGTTGGTGTACCGCTCTC
TCTTGTCTCGCAGCTGCTGGTGACAAAAAACTGAAAAGTTTGGCCGGGTT
GTTCAAGCGATACGCTTTCGGAACGCTCTCGGCGAGACGGTCCCAACGCG
TGAGTACGCGAGCCGTGACAATGGGTGTGGTGCTTTTTCGTCATGTCACC
TACAGTGGAGCGTTACTGTAAATTGTGCTTTTGGTGACAGCAGTAGCAGC
GATGGTGTTCGTGCCGGTGGAGGTGGGTCGTTGTACCGGTGATGGTGGTG
AGGTATGCTGACACGACCACGCCACGAGCGATGACGTAACGAGTGATGAC
TCTTGATGCAATCGACCTTTGTGTTTAGGGGTAGTGTCCGCAAGTGACGA
GCTCTTAAGTCGGCGTGTAGCGCTTGCTTTGTACATACCGATTCCCGTAC
ACACGCCCCCTTTTGTCGCAGGAGGCTTACTCGAGACAAGATGGATGACA
TCCACGCTCAGCTCCATCCCAGTGCCGGATCGGCATCCTCCAGCGGTGGC
GGCGGTGGCAGCAGCAAGAAGGCCAAGAAGAAGAAGACCAAGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1568:6486..7929-

>mRNA_E-siliculosus-1a_F_contig1568.3282.1 ID=mRNA_E-siliculosus-1a_F_contig1568.3282.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3282.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1568:6486..7929- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCACCGGCGGTTGCGACCGGCACAGAGAAGCCTTGCTCGAGGCCGCCG
GGAAGGGCGAAGCACCCGGGCTGCTGGGCGAGTACCTGCGCGGGTCGCCT
CAGCTGAACGATCTCTTGCACCTGTGGGATCTGGATCAACGCAAGGTCGG
CAGCGATCCTCAGCGGTGTCTGTCGTACGACGGGCACCGGCGGTTGCGAC
CGGCACAGAGAAGCCTTGCTCGAGGCCGCCGGGAAGGGCGAAGCACCCGG
GCTGCTGGGCGAGTACCTGCGCGGGTCGCCTCAGCTGAACGATCTCTTGC
ACCTGTGGGATCTGGATCAACGCAAGGTCGGCAGCGATCCTCAGCGGTGT
CTGTCGTACGACCCGCCGCCCACACGGACTCCTTCGCAGCCGTCCTTGAA
TGCCTCGCGACCGTGCTGCGACACCTGGCCGCGGGCTCGGCGGTAACGGG
CGCCGTGTCGGCTGTGGCCCGGGGGGAGGCTATCGAGGCGGCCGGCTTGG
GTCTGTGCAGCCGCCGCCCACACGGACTCCTTCGCAGCCGTCCTTGAATG
CCTCGCGACCGTGCTGCGACACCTGGCCGCGGGCTCGGCGGTAACGGGCG
CCGTGTCGGCTGTGGCCCGGGGGGAGGCTATCGAGGCGGCCGGCTTGGGT
CTGTGCAGGAGGCTTACTCGAGACAAGATGGATGACATCCACGCTCAGCT
CCATCCCAGTGCCGGATCGGCATCCTCCAGCGGTGGCGGCGGTGGCAGCA
GCAAGAAGGCCAAGAAGAAGAAGACCAAGGAGGCTTACTCGAGACAAGAT
GGATGACATCCACGCTCAGCTCCATCCCAGTGCCGGATCGGCATCCTCCA
GCGGTGGCGGCGGTGGCAGCAGCAAGAAGGCCAAGAAGAAGAAGACCAAG
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